Clone BO17302 Report

Search the DGRC for BO17302

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCycJ-RB
Protein status:BO17302.pep: validated full length
Sequenced Size:817

Clone Sequence Records

BO17302.3prime Sequence

815 bp (763 high quality bases) assembled on 2006-10-13

> BO17302.3prime
ATGGTCTAGAAAGCTTGCGGTACTCCGACCAGCGCCTGACCCCGCTGACC
TGGCGAACTGCAGCAATGCAGGCGGCAGCCAAAAGGGATGGCAGATCGTT
GGCAAATTGTACAATGTATAATCCGCCATGCGAAGGAGCAACTGCGCCAA
AATGGACAGCATCTCTTCGAAGCTTATATATCGCTGGTACGGCTGGGTGT
GATGGTTCCGCTCGTACTCATCCAACATCTCGATGTAGTTCTTGAAATCG
GAGCGAGTGAGAAAACTGCAGGCGAAGAGCTCCACAAAACTGGCGGTGGT
GGGACGTATTAGCTCGAAGTTCAGGAAGCACAGGATCTTCCTTTCCACAG
CCTTGTACTCGAATGCCGTATAGGCGTTCTTGACCAATCGGTTCATTTCG
CTGTAGCGCGGAATAAACGCATCCGTGTTTTCGATCTGCGCAGCTATATG
AAGACAAGTGATGGCCACCAGGAGCAATTTGTCCGGACGGATTTTGTAGT
AATCAACAAAGCGATCCATATAGTAGACGGCCAGGTGCAAAGCACAGCGA
CTAAGCTTGTGGGCGCTGGTCGCCAGTTTGAGCAACTGCAGCATTCTTCG
GCGCTCGTTCAGCTGCGGCGAAAGGTAAAACAAAGGCCGACGGCTGAGTT
CTTGCTCCCTCATGGTCAAAAATATATCCCGGGCATAGTCGGTGAGCCAG
TGCGTCTTAGCCAGGCGCTCGACATCTGCTTGCGGGCAAGTTTTCTTCAA
TTTGCGGTCGACGACGAAGATGTTCTGCTCGGCAGCCACTTTCTGCTCCA
TGTCGACTGATAACT

BO17302.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10308-PB 786 CycJ-RB 1..783 801..19 3915 100 Minus
CG10308-PA 1161 CycJ-RA 1..694 801..108 3470 100 Minus
CG10308-PA 1161 CycJ-RA 702..790 107..19 445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-RB 1471 CG10308-RB 112..894 801..19 3915 100 Minus
CycJ-RA 1478 CG10308-RA 112..901 801..19 3835 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3466949..3467372 531..108 2120 100 Minus
3L 28110227 3L 3466684..3466872 719..531 945 100 Minus
3L 28110227 3L 3467433..3467521 107..19 445 100 Minus
3L 28110227 3L 3466539..3466622 801..718 420 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:41:12 has no hits.

BO17302.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:03 Download gff for BO17302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10308-PB 1..786 18..801 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:48:47 Download gff for BO17302.3prime
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..899 11..801 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:14 Download gff for BO17302.3prime
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..899 11..801 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:14 Download gff for BO17302.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3466539..3466622 718..801 100 -> Minus
3L 3466686..3466872 531..717 100 -> Minus
3L 3466950..3467372 108..530 100 -> Minus
3L 3467433..3467526 11..107 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:48:47 Download gff for BO17302.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3466539..3466622 718..801 100 -> Minus
arm_3L 3466686..3466872 531..717 100 -> Minus
arm_3L 3466950..3467372 108..530 100 -> Minus
arm_3L 3467433..3467526 11..107 95   Minus

BO17302.5prime Sequence

811 bp (773 high quality bases) assembled on 2006-10-13

> BO17302.5prime
GAAGTTATCAGTCGACATGGAGCAGAAAGTGGCTGCCGAGCAGAACATCT
TCGTCGTCGACCGCAAATTGAAGAAAACTTGCCCGCAAGCAGATGTCGAG
CGCCTGGCTAAGACGCACTGGCTCACCGACTATGCCCGGGATATATTTTT
GACCATGAGGGAGCAAGAACTCAGCCGTCGGCCTTTGTTTTACCTTTCGC
CGCAGCTGAACGAGCGCCGAAGAATGCTGCAGTTGCTCAAACTGGCGACC
AGCGCCCACAAGCTTAGTCGCTGTGCTTTGCACCTGGCCGTCTACTATAT
GGATCGCTTTGTTGATTACTACAAAATCCGTCCGGACAAATTGCTCCTGG
TGGCCATCACTTGTCTTCATATAGCTGCGCAGATCGAAAACACGGATGCG
TTTATTCCGCGCTACAGCGAAATGAACCGATTGGTCAAGAACGCCTATAC
GGCATTCGAGTACAAGGCTGTGGAAAGGAAGATCCTGTGCTTCCTGAACT
TCGAGCTAATACGTCCCACCACCGCCAGTTTTGTGGAGCTCTTCGCCTGC
AGTTTTCTCACTCGCTCCGATTTCAAGAACTACATCGAGATGTTGGATGA
GTACGAGCGGAACCATCACACCCAGCCGTACCAGCGATATATAAGCTTCG
AAGAGATGCTGTCCATTTTGGCGCAGTTGCTCCTTCGCATGGCGGATTAT
ACATTGTACAATTTGCCAACGATCTGCCATCCCTTTTGGCTGCCGCCTGC
ATTGCTGCAGTTCGCCAGGTCAGCGGGGTCAGGCGCTGGTCGGAGTACCG
CAAGCTTTCTA

BO17302.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10308-PB 786 CycJ-RB 1..783 17..799 3915 100 Plus
CG10308-PA 1161 CycJ-RA 1..694 17..710 3470 100 Plus
CG10308-PA 1161 CycJ-RA 702..790 711..799 445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-RB 1471 CG10308-RB 112..894 17..799 3915 100 Plus
CycJ-RA 1478 CG10308-RA 112..901 17..799 3835 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3466949..3467372 287..710 2120 100 Plus
3L 28110227 3L 3466684..3466872 99..287 945 100 Plus
3L 28110227 3L 3467433..3467521 711..799 445 100 Plus
3L 28110227 3L 3466539..3466622 17..100 420 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:18:54 has no hits.

BO17302.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:04 Download gff for BO17302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10308-PB 1..786 17..800 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:21:43 Download gff for BO17302.5prime
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..899 17..807 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:32 Download gff for BO17302.5prime
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..899 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:32 Download gff for BO17302.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3466539..3466622 17..100 100 -> Plus
3L 3466686..3466872 101..287 100 -> Plus
3L 3466950..3467372 288..710 100 -> Plus
3L 3467433..3467526 711..807 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:21:43 Download gff for BO17302.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3466539..3466622 17..100 100 -> Plus
arm_3L 3466686..3466872 101..287 100 -> Plus
arm_3L 3466950..3467372 288..710 100 -> Plus
arm_3L 3467433..3467526 711..807 95   Plus

BO17302.complete Sequence

817 bp assembled on 2007-10-17

GenBank Submission: FJ634071

> BO17302.complete
GAAGTTATCAGTCGACATGGAGCAGAAAGTGGCTGCCGAGCAGAACATCT
TCGTCGTCGACCGCAAATTGAAGAAAACTTGCCCGCAAGCAGATGTCGAG
CGCCTGGCTAAGACGCACTGGCTCACCGACTATGCCCGGGATATATTTTT
GACCATGAGGGAGCAAGAACTCAGCCGTCGGCCTTTGTTTTACCTTTCGC
CGCAGCTGAACGAGCGCCGAAGAATGCTGCAGTTGCTCAAACTGGCGACC
AGCGCCCACAAGCTTAGTCGCTGTGCTTTGCACCTGGCCGTCTACTATAT
GGATCGCTTTGTTGATTACTACAAAATCCGTCCGGACAAATTGCTCCTGG
TGGCCATCACTTGTCTTCATATAGCTGCGCAGATCGAAAACACGGATGCG
TTTATTCCGCGCTACAGCGAAATGAACCGATTGGTCAAGAACGCCTATAC
GGCATTCGAGTACAAGGCTGTGGAAAGGAAGATCCTGTGCTTCCTGAACT
TCGAGCTAATACGTCCCACCACCGCCAGTTTTGTGGAGCTCTTCGCCTGC
AGTTTTCTCACTCGCTCCGATTTCAAGAACTACATCGAGATGTTGGATGA
GTACGAGCGGAACCATCACACCCAGCCGTACCAGCGATATATAAGCTTCG
AAGAGATGCTGTCCATTTTGGCGCAGTTGCTCCTTCGCATGGCGGATTAT
ACATTGTACAATTTGCCAACGATCTGCCATCCCTTTTGGCTGCCGCCTGC
ATTGCTGCAGTTCGCCAGGTCAGCGGGGTCAGGCGCTGGTCGGAGTACCG
CAAGCTTTCTAGACCAT

BO17302.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-RB 786 CG10308-PB 1..783 17..799 3915 100 Plus
CycJ-RA 1161 CG10308-PA 1..790 17..799 3810 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-RB 1471 CG10308-RB 112..894 17..799 3915 100 Plus
CycJ-RA 1478 CG10308-RA 112..901 17..799 3810 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3466949..3467372 287..710 2120 100 Plus
3L 28110227 3L 3466684..3466872 99..287 945 100 Plus
3L 28110227 3L 3467433..3467521 711..799 445 100 Plus
3L 28110227 3L 3466539..3466622 17..100 420 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:29:23 has no hits.

BO17302.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:26 Download gff for BO17302.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 1..786 17..800 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:07 Download gff for BO17302.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 126..913 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:13 Download gff for BO17302.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..894 17..801 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:00 Download gff for BO17302.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 126..908 17..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:23 Download gff for BO17302.complete
Subject Subject Range Query Range Percent Splice Strand
CycJ-RB 112..894 17..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:23 Download gff for BO17302.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3466539..3466622 17..100 100 -> Plus
3L 3466686..3466872 101..287 100 -> Plus
3L 3466950..3467372 288..710 100 -> Plus
3L 3467433..3467521 711..801 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:13 Download gff for BO17302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3466539..3466622 17..100 100 -> Plus
arm_3L 3466686..3466872 101..287 100 -> Plus
arm_3L 3466950..3467372 288..710 100 -> Plus
arm_3L 3467433..3467521 711..801 97   Plus

BO17302.pep Sequence

Translation from 16 to 817

> BO17302.pep
MEQKVAAEQNIFVVDRKLKKTCPQADVERLAKTHWLTDYARDIFLTMREQ
ELSRRPLFYLSPQLNERRRMLQLLKLATSAHKLSRCALHLAVYYMDRFVD
YYKIRPDKLLLVAITCLHIAAQIENTDAFIPRYSEMNRLVKNAYTAFEYK
AVERKILCFLNFELIRPTTASFVELFACSFLTRSDFKNYIEMLDEYERNH
HTQPYQRYISFEEMLSILAQLLLRMADYTLYNLPTICHPFWLPPALLQFA
RSAGSGAGRSTASFLDH

BO17302.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
CycJ-PB 261 CG10308-PB 1..261 1..261 1356 100 Plus
CycJ-PA 386 CG10308-PA 1..231 1..231 1191 100 Plus