Clone Sequence Records
BO17305.3prime Sequence
805 bp (715 high quality bases) assembled on 2006-10-13
> BO17305.3prime
ATGGTCTAGAAAGCTTGCTTGATATGTGGAGCTGGAGTCCAGCAGTAGAT
TGGAACAGCCGTTCAGGTAGGCCTTGTGCAGCTTGTTGGCAAACTCCTTA
TCGTTCTGGATAAGGTACGTGAAGGCCTGGACGAACTGCGTCGAGTTCAG
CAGTGGCTGCTGTGGCTGCTGTGGCTGCTGTGGCTCCGGATTGCCGTTGT
TGGGCGCGTCGAACATGGTGGGCGGCATGAGGGCCGGCCCGGGCTTGTCG
CCAGCCAGCAGTCTCCGCAAGCACTTGCCGGCATCGTCGTTGGCCATCAG
CGCCGACGAGGACGGGGCGACTGTCGGAGATTGAGCCGTAGCGTAGCTTT
TACCGATCTTCAGGTCGCTCAGGAGCTGAATGTTAAGCTGCTGCATCTTC
TGGAAGGGCGACAGCCGGCTCTCGTGATTGTCCCTGCCTGCCGGGGGCAA
CAGATCCTCGCCAGGCGTGGCTGCCCGCTGCTGTTTCTCCAGCTGGTCCA
CGGAGAGCGGCTGGACGCGGTGGAACAGTGACTCTGCCGTGGCCTGCTTG
GCCGATTCGAAGAACTTCAACACATTGCCGGCCGTTACGTTCTCCGCCGA
AGGCGTCTTCGGCTGCCCGCCGCTCACCTGGGCATTGTAGTCCTTCTGGG
CCTTGGTCAGCATGTTGAATATGCTGGCCGGCTGGCTGCTGTCCTGCTTT
GGCTGCTGGGGCGCGGAGACGTGACGCTGGGCCTGGCCATTCGTTCCCTG
ATCCTTGGACTTGAGCAGCCCGTTCACCAAGCCGCTGATGCGGTCGCACT
CCTCG
BO17305.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11183-PA | 1119 | CG11183-RA | 330..1116 | 805..19 | 3935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP1-RB | 1225 | CG11183-RB | 414..1200 | 805..19 | 3935 | 100 | Minus |
| DCP1-RA | 1513 | CG11183-RA | 414..1200 | 805..19 | 3935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23889077..23889863 | 19..805 | 3935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:43:14 has no hits.
BO17305.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:06 Download gff for
BO17305.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11183-PA | 330..1119 | 15..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:42 Download gff for
BO17305.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 414..1203 | 15..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:06 Download gff for
BO17305.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DCP1-RA | 414..1203 | 15..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:06 Download gff for
BO17305.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23889073..23889863 | 15..805 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:42 Download gff for
BO17305.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19776596..19777386 | 15..805 | 99 | | Plus |
BO17305.5prime Sequence
662 bp (661 high quality bases) assembled on 2006-10-13
> BO17305.5prime
GAAGTTATCAGTCGACATGGCCGACGAGAGCATCACGCGAATGAACCTGG
CGGCCATCAAGAAGATCGACCCGTACGCCAAGGAGATCGTGGATTCGTCC
TCGCACGTCGCCTTCTACACGTTCAACTCGTCGCAGAACGAGTGGGAAAA
GACCGATGTGGAGGGAGCCTTCTTCATATACCACCGCAACGCGGAGCCCT
TTCACAGCATCTTCATCAACAACCGACTGAACACCACGTCCTTCGTGGAG
CCCATCACCGGCAGCCTGGAGCTGCAGTCGCAGCCGCCGTTCCTGCTCTA
CCGCAACGAGCGCTCGCGCATCCGCGGCTTCTGGTTCTACAACAGCGAGG
AGTGCGACCGCATCAGCGGCTTGGTGAACGGGCTGCTCAAGTCCAAGGAT
CAGGGAACGAATGGCCAGGCCCAGCGTCACGTCTCCGCGCCCCAGCAGCC
AAAGCAGGACAGCAGCCAGCCGGCCAGCATATTCAACATGCTGACCAAGG
CCCAGAAGGACTACAATGCCCAGGTGAGCGGCGGGCAGCCGAAGACGCCT
TCGGCGGAGAACGTAACGGCCGGCAATGTGTTGAAGTTCTTCGAATCGGC
CAAGCAGGCCACGGCAGAGTCACTGTTCCACCGCGTCCAGCCGCTCTCCG
TGGACCAGCTGG
BO17305.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11183-PA | 1119 | CG11183-RA | 1..646 | 17..662 | 3230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP1-RB | 1225 | CG11183-RB | 85..730 | 17..662 | 3230 | 100 | Plus |
| DCP1-RA | 1513 | CG11183-RA | 85..730 | 17..662 | 3230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23889547..23890192 | 662..17 | 3230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:13:32 has no hits.
BO17305.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:07 Download gff for
BO17305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11183-PA | 1..646 | 17..662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:05 Download gff for
BO17305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 76..730 | 9..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:27:46 Download gff for
BO17305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DCP1-RA | 76..730 | 9..662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:46 Download gff for
BO17305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23889547..23890201 | 9..662 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:05 Download gff for
BO17305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19777070..19777724 | 9..662 | 99 | | Minus |
BO17305.complete Sequence
1150 bp assembled on 2006-10-11
GenBank Submission: FJ634073
> BO17305.complete
GAAGTTATCAGTCGACATGGCCGACGAGAGCATCACGCGAATGAACCTGG
CGGCCATCAAGAAGATCGACCCGTACGCCAAGGAGATCGTGGATTCGTCC
TCGCACGTCGCCTTCTACACGTTCAACTCGTCGCAGAACGAGTGGGAAAA
GACCGATGTGGAGGGAGCCTTCTTCATATACCACCGCAACGCGGAGCCCT
TTCACAGCATCTTCATCAACAACCGACTGAACACCACGTCCTTCGTGGAG
CCCATCACCGGCAGCCTGGAGCTGCAGTCGCAGCCGCCGTTCCTGCTCTA
CCGCAACGAGCGCTCGCGCATCCGCGGCTTCTGGTTCTACAACAGCGAGG
AGTGCGACCGCATCAGCGGCTTGGTGAACGGGCTGCTCAAGTCCAAGGAT
CAGGGAACGAATGGCCAGGCCCAGCGTCACGTCTCCGCGCCCCAGCAGCC
AAAGCAGGACAGCAGCCAGCCGGCCAGCATATTCAACATGCTGACCAAGG
CCCAGAAGGACTACAATGCCCAGGTGAGCGGCGGGCAGCCGAAGACGCCT
TCGGCGGAGAACGTAACGGCCGGCAATGTGTTGAAGTTCTTCGAATCGGC
CAAGCAGGCCACGGCAGAGTCACTGTTCCACCGCGTCCAGCCGCTCTCCG
TGGACCAGCTGGAGAAACAGCAGCGGGCAGCCACGCCTGGCGAGGATCTG
TTGCCCCCGGCAGGCAGGGACAATCACGAGAGCCGGCTGTCGCCCTTCCA
GAAGATGCAGCAGCTTAACATTCAGCTCCTGAGCGACCTGAAGATCGGTA
AAAGCTACGCTACGGCTCAATCTCCGACAGTCGCCCCGTCCTCGTCGGCG
CTGATGGCCAACGACGATGCCGGCAAGTGCTTGCGGAGACTGCTGGCTGG
CGACAAGCCCGGGCCGGCCCTCATGCCGCCCACCATGTTCGACGCGCCCA
ACAACGGCAATCCGGAGCCACAGCAGCCACAGCAGCCACAGCAGCCACTG
CTGAACTCGACGCAGTTCGTCCAGGCCTTCACGTACCTTATCCAGAACGA
TAAGGAGTTTGCCAACAAGCTGCACAAGGCCTACCTGAACGGCTGTTCCA
ATCTACTGCTGGACTCCAGCTCCACATATCAAGCAAGCTTTCTAGACCAT
BO17305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP1-RB | 1119 | CG11183-PB | 1..1116 | 17..1132 | 5580 | 100 | Plus |
| DCP1-RA | 1119 | CG11183-PA | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP1-RB | 1225 | CG11183-RB | 85..1200 | 17..1132 | 5580 | 100 | Plus |
| DCP1-RA | 1513 | CG11183-RA | 85..1200 | 17..1132 | 5580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23889077..23890192 | 1132..17 | 5580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:35:36 has no hits.
BO17305.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:43 Download gff for
BO17305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 1..1119 | 17..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:58 Download gff for
BO17305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 65..1192 | 9..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:21 Download gff for
BO17305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 85..1200 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:43 Download gff for
BO17305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dcp1-RA | 65..1192 | 9..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:40 Download gff for
BO17305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DCP1-RA | 85..1200 | 17..1134 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:40 Download gff for
BO17305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23889075..23890192 | 17..1134 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:21 Download gff for
BO17305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19776598..19777715 | 17..1134 | 99 | | Minus |
BO17305.pep Sequence
Translation from 16 to 1150
> BO17305.pep
MADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEG
AFFIYHRNAEPFHSIFINNRLNTTSFVEPITGSLELQSQPPFLLYRNERS
RIRGFWFYNSEECDRISGLVNGLLKSKDQGTNGQAQRHVSAPQQPKQDSS
QPASIFNMLTKAQKDYNAQVSGGQPKTPSAENVTAGNVLKFFESAKQATA
ESLFHRVQPLSVDQLEKQQRAATPGEDLLPPAGRDNHESRLSPFQKMQQL
NIQLLSDLKIGKSYATAQSPTVAPSSSALMANDDAGKCLRRLLAGDKPGP
ALMPPTMFDAPNNGNPEPQQPQQPQQPLLNSTQFVQAFTYLIQNDKEFAN
KLHKAYLNGCSNLLLDSSSTYQASFLDH
BO17305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCP1-PB | 372 | CG11183-PB | 1..372 | 1..372 | 1931 | 100 | Plus |
| DCP1-PA | 372 | CG11183-PA | 1..372 | 1..372 | 1931 | 100 | Plus |
