Clone BO17309 Report

Search the DGRC for BO17309

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG5783-RA
Protein status:BO17309.pep: validated full length
Sequenced Size:895

Clone Sequence Records

BO17309.3prime Sequence

687 bp (666 high quality bases) assembled on 2006-10-13

> BO17309.3prime
ATGGTCTAGAAAGCTTGCCTCGCCCTCGGGCCATGTGAACTGCCCACCGG
TGGGTTCCGTCCTTAGCCAGTAGCATTGATCGATGACCTGGAATCCCAGT
TTGCTGAACATCTCCGATGACGGCTTATTCGAGGGGCCCACGAGAGCCAT
TACATCGTGACCTTGGACGGCTAGGCGGTATGCTATTTCCCTAGTCACCA
CACTGCCAAATCCGCGTCGCTTGTGTGTATCTTTGACTTGCAGGGCGCCC
AAGTAGCCGCCTTGTAACCTAATGCACCAGGCAACTAGTTCCTGGGTGTC
TTCCTGGTACAATCCAACACTGACGCACAGGCGAATCTGCCTTTCTACGA
AGAACAAAGATCCCTCATGATGATTGGGCCACTCTGCGTTAACCAATGGA
GCATCTGCCACACTCAACGACTTTAAAACAAATCCAGATGGAGGTTCGAC
TTTCAGCTTGAGAGCGTCGTTGGCTTTCATAAAAAACAAATTCGTGCAGT
CCCTGTACACCAGATTCAACTTTTTGGACTCCACCAGACTATCCAGGGCA
CCAATGTGTCTGGAGGGTATAGAACTGCATTTCAAACCCGACGACCAGTC
CAGTAAATCCAGAGCTTTTCCAACAAGGCCGTTCGTGTTGTTCAAGCAAC
CTACGAATAGTTGATAGCGATCCACTATAACAAAAAG

BO17309.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-PA 864 CG5783-RA 193..861 687..19 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-RA 953 CG5783-RA 227..895 687..19 3345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18156852..18157104 271..19 1265 100 Minus
2L 23513712 2L 18156341..18156568 673..446 1140 100 Minus
2L 23513712 2L 18156625..18156803 445..267 895 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:13:21 has no hits.

BO17309.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:07 Download gff for BO17309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5783-PA 193..864 15..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:53 Download gff for BO17309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 227..900 11..687 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:32 Download gff for BO17309.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 227..900 11..687 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:32 Download gff for BO17309.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18156342..18156568 446..672 100 -> Minus
2L 18156625..18156801 269..445 100 -> Minus
2L 18156855..18157110 14..268 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:53 Download gff for BO17309.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18156342..18156568 446..672 100 -> Minus
arm_2L 18156625..18156801 269..445 100 -> Minus
arm_2L 18156855..18157110 14..268 98 -> Minus

BO17309.5prime Sequence

733 bp (624 high quality bases) assembled on 2006-10-13

> BO17309.5prime
GAAGTTATCAGTCGACATGGGTACTCGATTAGAAGTTATTGGGCTGAAAG
ATATCCAGGAGTTCCAACAGCTCTACAAGCAAAACTGGCCAAAATATTGC
CAGGAATACTACTGCCTTGATAACTTTGTGGAATTTCTGAAAAAACAGCC
CCATATGAGGAATATTAAGATGTACACATTGGATGCAAAACAAGCCAGAG
ATGAAGGTCTTTTTGTTATAGTGGATCGCTATCAACTATTCGTAGGTTGC
TTGAACAACACGAACGGCCTTGTTGGAAAAGCTCTGGATTTACTGGACTG
GTCGTCGGGTTTGAAATGCAGTTCTATACCCTCCAGACACATTGGTGCCC
TGGATAGTCTGGTGGAGTCCAAAAAGTTGAATCTGGTGTACAGGGACTGC
ACGAATTTGTTTTTTATGAAAGCCAACGACGCTCTCAAGCTGAAAGTCGA
ACCTCCATCTGGATTTGTTTTAAAGTCGTTGAGTGTGGCAGATGCTCCAT
TGGTTAACGCAGAGTGGCCCAATCATCATGAGGGATCTTTGTTCTTCGTA
GAAAGGCAGATTCGCCTGTGCGTCAGTGTTGGATTGTACCAGGAAGACAC
CCAGGAACTAGTTGCCTGGTGCATTAGGTTACAAGGCGGCTACTTGGGCG
CCCTGCAAGTCAAAGATACACACAAGCGACGCGGATTTGGCAGTGTGGTG
ACTAGGGAAATAGCATACCGCCTAGCCGTCCAA

BO17309.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-PA 864 CG5783-RA 1..717 17..733 3585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-RA 953 CG5783-RA 35..751 17..733 3585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18156341..18156568 223..450 1140 100 Plus
2L 23513712 2L 18156077..18156284 17..224 1040 100 Plus
2L 23513712 2L 18156625..18156803 451..629 895 100 Plus
2L 23513712 2L 18156852..18156960 625..733 545 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:02:30 has no hits.

BO17309.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:09 Download gff for BO17309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5783-PA 1..715 17..731 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:01 Download gff for BO17309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..749 17..731 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:44 Download gff for BO17309.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..749 17..731 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:44 Download gff for BO17309.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18156077..18156283 17..223 100 -> Plus
2L 18156342..18156568 224..450 100 -> Plus
2L 18156625..18156801 451..627 100 -> Plus
2L 18156855..18156958 628..731 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:01 Download gff for BO17309.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18156625..18156801 451..627 100 -> Plus
arm_2L 18156855..18156958 628..731 100   Plus
arm_2L 18156077..18156283 17..223 100 -> Plus
arm_2L 18156342..18156568 224..450 100 -> Plus

BO17309.complete Sequence

895 bp assembled on 2006-10-11

GenBank Submission: FJ634074

> BO17309.complete
GAAGTTATCAGTCGACATGGGTACTCGATTAGAAGTTATTGGGCTGAAAG
ATATCCAGGAGTTCCAACAGCTCTACAAGCAAAACTGGCCAAAATATTGC
CAGGAATACTACTGCCTTGATAACTTTGTGGAATTTCTGAAAAAACAGCC
CCATATGAGGAATATTAAGATGTACACATTGGATGCAAAACAAGCCAGAG
ATGAAGGTCTTTTTGTTATAGTGGATCGCTATCAACTATTCGTAGGTTGC
TTGAACAACACGAACGGCCTTGTTGGAAAAGCTCTGGATTTACTGGACTG
GTCGTCGGGTTTGAAATGCAGTTCTATACCCTCCAGACACATTGGTGCCC
TGGATAGTCTGGTGGAGTCCAAAAAGTTGAATCTGGTGTACAGGGACTGC
ACGAATTTGTTTTTTATGAAAGCCAACGACGCTCTCAAGCTGAAAGTCGA
ACCTCCATCTGGATTTGTTTTAAAGTCGTTGAGTGTGGCAGATGCTCCAT
TGGTTAACGCAGAGTGGCCCAATCATCATGAGGGATCTTTGTTCTTCGTA
GAAAGGCAGATTCGCCTGTGCGTCAGTGTTGGATTGTACCAGGAAGACAC
CCAGGAACTAGTTGCCTGGTGCATTAGGTTACAAGGCGGCTACTTGGGCG
CCCTGCAAGTCAAAGATACACACAAGCGACGCGGATTTGGCAGTGTGGTG
ACTAGGGAAATAGCATACCGCCTAGCCGTCCAAGGTCACGATGTAATGGC
TCTCGTGGGCCCCTCGAATAAGCCGTCATCGGAGATGTTCAGCAAACTGG
GATTCCAGGTCATCGATCAATGCTACTGGCTAAGGACGGAACCCACCGGT
GGGCAGTTCACATGGCCCGAGGGCGAGGCAAGCTTTCTAGACCAT

BO17309.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-RA 864 CG5783-PA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-RA 953 CG5783-RA 35..895 17..877 4305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18156852..18157104 625..877 1265 100 Plus
2L 23513712 2L 18156341..18156568 223..450 1140 100 Plus
2L 23513712 2L 18156077..18156284 17..224 1040 100 Plus
2L 23513712 2L 18156625..18156803 451..629 895 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:53:02 has no hits.

BO17309.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:44 Download gff for BO17309.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 1..864 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:59 Download gff for BO17309.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..900 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:54 Download gff for BO17309.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..895 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:44 Download gff for BO17309.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..900 17..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:14 Download gff for BO17309.complete
Subject Subject Range Query Range Percent Splice Strand
CG5783-RA 35..895 17..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:14 Download gff for BO17309.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18156077..18156283 17..223 100 -> Plus
2L 18156342..18156568 224..450 100 -> Plus
2L 18156625..18156801 451..627 100 -> Plus
2L 18156855..18157104 628..879 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:54 Download gff for BO17309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18156855..18157104 628..879 99   Plus
arm_2L 18156077..18156283 17..223 100 -> Plus
arm_2L 18156342..18156568 224..450 100 -> Plus
arm_2L 18156625..18156801 451..627 100 -> Plus

BO17309.pep Sequence

Translation from 16 to 895

> BO17309.pep
MGTRLEVIGLKDIQEFQQLYKQNWPKYCQEYYCLDNFVEFLKKQPHMRNI
KMYTLDAKQARDEGLFVIVDRYQLFVGCLNNTNGLVGKALDLLDWSSGLK
CSSIPSRHIGALDSLVESKKLNLVYRDCTNLFFMKANDALKLKVEPPSGF
VLKSLSVADAPLVNAEWPNHHEGSLFFVERQIRLCVSVGLYQEDTQELVA
WCIRLQGGYLGALQVKDTHKRRGFGSVVTREIAYRLAVQGHDVMALVGPS
NKPSSEMFSKLGFQVIDQCYWLRTEPTGGQFTWPEGEASFLDH

BO17309.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5783-PA 287 CG5783-PA 1..287 1..287 1529 100 Plus
CG17681-PA 293 CG17681-PA 4..290 1..284 474 35.1 Plus
CG15155-PA 258 CG15155-PA 3..256 4..279 467 36.2 Plus
CG15155-PB 257 CG15155-PB 3..255 4..279 451 35.8 Plus
CG12560-PB 278 CG12560-PB 30..276 29..271 302 31.3 Plus