Clone Sequence Records
BO17309.3prime Sequence
687 bp (666 high quality bases) assembled on 2006-10-13
> BO17309.3prime
ATGGTCTAGAAAGCTTGCCTCGCCCTCGGGCCATGTGAACTGCCCACCGG
TGGGTTCCGTCCTTAGCCAGTAGCATTGATCGATGACCTGGAATCCCAGT
TTGCTGAACATCTCCGATGACGGCTTATTCGAGGGGCCCACGAGAGCCAT
TACATCGTGACCTTGGACGGCTAGGCGGTATGCTATTTCCCTAGTCACCA
CACTGCCAAATCCGCGTCGCTTGTGTGTATCTTTGACTTGCAGGGCGCCC
AAGTAGCCGCCTTGTAACCTAATGCACCAGGCAACTAGTTCCTGGGTGTC
TTCCTGGTACAATCCAACACTGACGCACAGGCGAATCTGCCTTTCTACGA
AGAACAAAGATCCCTCATGATGATTGGGCCACTCTGCGTTAACCAATGGA
GCATCTGCCACACTCAACGACTTTAAAACAAATCCAGATGGAGGTTCGAC
TTTCAGCTTGAGAGCGTCGTTGGCTTTCATAAAAAACAAATTCGTGCAGT
CCCTGTACACCAGATTCAACTTTTTGGACTCCACCAGACTATCCAGGGCA
CCAATGTGTCTGGAGGGTATAGAACTGCATTTCAAACCCGACGACCAGTC
CAGTAAATCCAGAGCTTTTCCAACAAGGCCGTTCGTGTTGTTCAAGCAAC
CTACGAATAGTTGATAGCGATCCACTATAACAAAAAG
BO17309.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-PA | 864 | CG5783-RA | 193..861 | 687..19 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-RA | 953 | CG5783-RA | 227..895 | 687..19 | 3345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18156852..18157104 | 271..19 | 1265 | 100 | Minus |
2L | 23513712 | 2L | 18156341..18156568 | 673..446 | 1140 | 100 | Minus |
2L | 23513712 | 2L | 18156625..18156803 | 445..267 | 895 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:13:21 has no hits.
BO17309.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:07 Download gff for
BO17309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-PA | 193..864 | 15..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:53 Download gff for
BO17309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 227..900 | 11..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:32 Download gff for
BO17309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 227..900 | 11..687 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:32 Download gff for
BO17309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18156342..18156568 | 446..672 | 100 | -> | Minus |
2L | 18156625..18156801 | 269..445 | 100 | -> | Minus |
2L | 18156855..18157110 | 14..268 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:53 Download gff for
BO17309.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18156342..18156568 | 446..672 | 100 | -> | Minus |
arm_2L | 18156625..18156801 | 269..445 | 100 | -> | Minus |
arm_2L | 18156855..18157110 | 14..268 | 98 | -> | Minus |
BO17309.5prime Sequence
733 bp (624 high quality bases) assembled on 2006-10-13
> BO17309.5prime
GAAGTTATCAGTCGACATGGGTACTCGATTAGAAGTTATTGGGCTGAAAG
ATATCCAGGAGTTCCAACAGCTCTACAAGCAAAACTGGCCAAAATATTGC
CAGGAATACTACTGCCTTGATAACTTTGTGGAATTTCTGAAAAAACAGCC
CCATATGAGGAATATTAAGATGTACACATTGGATGCAAAACAAGCCAGAG
ATGAAGGTCTTTTTGTTATAGTGGATCGCTATCAACTATTCGTAGGTTGC
TTGAACAACACGAACGGCCTTGTTGGAAAAGCTCTGGATTTACTGGACTG
GTCGTCGGGTTTGAAATGCAGTTCTATACCCTCCAGACACATTGGTGCCC
TGGATAGTCTGGTGGAGTCCAAAAAGTTGAATCTGGTGTACAGGGACTGC
ACGAATTTGTTTTTTATGAAAGCCAACGACGCTCTCAAGCTGAAAGTCGA
ACCTCCATCTGGATTTGTTTTAAAGTCGTTGAGTGTGGCAGATGCTCCAT
TGGTTAACGCAGAGTGGCCCAATCATCATGAGGGATCTTTGTTCTTCGTA
GAAAGGCAGATTCGCCTGTGCGTCAGTGTTGGATTGTACCAGGAAGACAC
CCAGGAACTAGTTGCCTGGTGCATTAGGTTACAAGGCGGCTACTTGGGCG
CCCTGCAAGTCAAAGATACACACAAGCGACGCGGATTTGGCAGTGTGGTG
ACTAGGGAAATAGCATACCGCCTAGCCGTCCAA
BO17309.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-PA | 864 | CG5783-RA | 1..717 | 17..733 | 3585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-RA | 953 | CG5783-RA | 35..751 | 17..733 | 3585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18156341..18156568 | 223..450 | 1140 | 100 | Plus |
2L | 23513712 | 2L | 18156077..18156284 | 17..224 | 1040 | 100 | Plus |
2L | 23513712 | 2L | 18156625..18156803 | 451..629 | 895 | 100 | Plus |
2L | 23513712 | 2L | 18156852..18156960 | 625..733 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:02:30 has no hits.
BO17309.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:09 Download gff for
BO17309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:01 Download gff for
BO17309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..749 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:44 Download gff for
BO17309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..749 | 17..731 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:44 Download gff for
BO17309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18156077..18156283 | 17..223 | 100 | -> | Plus |
2L | 18156342..18156568 | 224..450 | 100 | -> | Plus |
2L | 18156625..18156801 | 451..627 | 100 | -> | Plus |
2L | 18156855..18156958 | 628..731 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:01 Download gff for
BO17309.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18156625..18156801 | 451..627 | 100 | -> | Plus |
arm_2L | 18156855..18156958 | 628..731 | 100 | | Plus |
arm_2L | 18156077..18156283 | 17..223 | 100 | -> | Plus |
arm_2L | 18156342..18156568 | 224..450 | 100 | -> | Plus |
BO17309.complete Sequence
895 bp assembled on 2006-10-11
GenBank Submission: FJ634074
> BO17309.complete
GAAGTTATCAGTCGACATGGGTACTCGATTAGAAGTTATTGGGCTGAAAG
ATATCCAGGAGTTCCAACAGCTCTACAAGCAAAACTGGCCAAAATATTGC
CAGGAATACTACTGCCTTGATAACTTTGTGGAATTTCTGAAAAAACAGCC
CCATATGAGGAATATTAAGATGTACACATTGGATGCAAAACAAGCCAGAG
ATGAAGGTCTTTTTGTTATAGTGGATCGCTATCAACTATTCGTAGGTTGC
TTGAACAACACGAACGGCCTTGTTGGAAAAGCTCTGGATTTACTGGACTG
GTCGTCGGGTTTGAAATGCAGTTCTATACCCTCCAGACACATTGGTGCCC
TGGATAGTCTGGTGGAGTCCAAAAAGTTGAATCTGGTGTACAGGGACTGC
ACGAATTTGTTTTTTATGAAAGCCAACGACGCTCTCAAGCTGAAAGTCGA
ACCTCCATCTGGATTTGTTTTAAAGTCGTTGAGTGTGGCAGATGCTCCAT
TGGTTAACGCAGAGTGGCCCAATCATCATGAGGGATCTTTGTTCTTCGTA
GAAAGGCAGATTCGCCTGTGCGTCAGTGTTGGATTGTACCAGGAAGACAC
CCAGGAACTAGTTGCCTGGTGCATTAGGTTACAAGGCGGCTACTTGGGCG
CCCTGCAAGTCAAAGATACACACAAGCGACGCGGATTTGGCAGTGTGGTG
ACTAGGGAAATAGCATACCGCCTAGCCGTCCAAGGTCACGATGTAATGGC
TCTCGTGGGCCCCTCGAATAAGCCGTCATCGGAGATGTTCAGCAAACTGG
GATTCCAGGTCATCGATCAATGCTACTGGCTAAGGACGGAACCCACCGGT
GGGCAGTTCACATGGCCCGAGGGCGAGGCAAGCTTTCTAGACCAT
BO17309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-RA | 864 | CG5783-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-RA | 953 | CG5783-RA | 35..895 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18156852..18157104 | 625..877 | 1265 | 100 | Plus |
2L | 23513712 | 2L | 18156341..18156568 | 223..450 | 1140 | 100 | Plus |
2L | 23513712 | 2L | 18156077..18156284 | 17..224 | 1040 | 100 | Plus |
2L | 23513712 | 2L | 18156625..18156803 | 451..629 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:53:02 has no hits.
BO17309.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:44 Download gff for
BO17309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 1..864 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:59 Download gff for
BO17309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..900 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:54 Download gff for
BO17309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..895 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:44 Download gff for
BO17309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..900 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:14 Download gff for
BO17309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5783-RA | 35..895 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:14 Download gff for
BO17309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18156077..18156283 | 17..223 | 100 | -> | Plus |
2L | 18156342..18156568 | 224..450 | 100 | -> | Plus |
2L | 18156625..18156801 | 451..627 | 100 | -> | Plus |
2L | 18156855..18157104 | 628..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:54 Download gff for
BO17309.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18156855..18157104 | 628..879 | 99 | | Plus |
arm_2L | 18156077..18156283 | 17..223 | 100 | -> | Plus |
arm_2L | 18156342..18156568 | 224..450 | 100 | -> | Plus |
arm_2L | 18156625..18156801 | 451..627 | 100 | -> | Plus |
BO17309.pep Sequence
Translation from 16 to 895
> BO17309.pep
MGTRLEVIGLKDIQEFQQLYKQNWPKYCQEYYCLDNFVEFLKKQPHMRNI
KMYTLDAKQARDEGLFVIVDRYQLFVGCLNNTNGLVGKALDLLDWSSGLK
CSSIPSRHIGALDSLVESKKLNLVYRDCTNLFFMKANDALKLKVEPPSGF
VLKSLSVADAPLVNAEWPNHHEGSLFFVERQIRLCVSVGLYQEDTQELVA
WCIRLQGGYLGALQVKDTHKRRGFGSVVTREIAYRLAVQGHDVMALVGPS
NKPSSEMFSKLGFQVIDQCYWLRTEPTGGQFTWPEGEASFLDH
BO17309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5783-PA | 287 | CG5783-PA | 1..287 | 1..287 | 1529 | 100 | Plus |
CG17681-PA | 293 | CG17681-PA | 4..290 | 1..284 | 474 | 35.1 | Plus |
CG15155-PA | 258 | CG15155-PA | 3..256 | 4..279 | 467 | 36.2 | Plus |
CG15155-PB | 257 | CG15155-PB | 3..255 | 4..279 | 451 | 35.8 | Plus |
CG12560-PB | 278 | CG12560-PB | 30..276 | 29..271 | 302 | 31.3 | Plus |