Clone Sequence Records
BO17311.3prime Sequence
410 bp (410 high quality bases) assembled on 2006-10-13
> BO17311.3prime
ATGGTCTAGAAAGCTTGCGCCAAGATACTGCCACTGCGATGGGTATGAGA
TGCAGCTGGCAACCATTAGTGTGTAAATTTTTACTAGAATTGCACATATC
TTCCTCACAAAAGCACATACGTCCACTGCCTGAACCTTCCACCATGCACA
CGTGATCGACCATGAATAAATTGATCTGTAACTGTGACGTACACATGCGT
CGCACCACCTTGGCAGGGCTGTATAGTTGAAAGGATCCTTGCAGCGGGCA
TCAGTCCAGGAGTCGCACTCATAGCAGTAAATCGATCGCGTTTGACATTC
GGCTGAGGTCTGCGGAATCCATATGAAAGTTAGAAATCCGATAACGGCTG
TTAATACCAACAGCCAATTGCCAACTGCATTTCTCTGCGTCCACATGTCG
ACTGATAACT
BO17311.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33472-PA | 255 | CG33472-RA | 1..254 | 396..143 | 1270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qvr-RB | 5055 | CG33472-RB | 725..913 | 396..208 | 945 | 100 | Minus |
qvr-RB | 5055 | CG33472-RB | 984..1175 | 210..19 | 900 | 97.9 | Minus |
qvr-RC | 5046 | CG33472-RC | 975..1166 | 210..19 | 900 | 97.9 | Minus |
qvr-RC | 5046 | CG33472-RC | 725..904 | 396..208 | 455 | 84.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11447533..11447724 | 210..19 | 900 | 97.9 | Minus |
2R | 25286936 | 2R | 11446130..11446189 | 350..291 | 300 | 100 | Minus |
2R | 25286936 | 2R | 11447156..11447209 | 290..237 | 270 | 100 | Minus |
2R | 25286936 | 2R | 11444712..11444760 | 396..348 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:20:59 has no hits.
BO17311.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:09 Download gff for
BO17311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33472-PA | 1..255 | 142..396 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:54 Download gff for
BO17311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qvr-RB | 725..912 | 209..396 | 100 | -> | Minus |
qvr-RB | 986..1178 | 15..208 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:52 Download gff for
BO17311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qvr-RB | 725..912 | 209..396 | 100 | -> | Minus |
qvr-RB | 986..1178 | 15..208 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:52 Download gff for
BO17311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11444712..11444760 | 348..396 | 100 | -> | Minus |
2R | 11446133..11446189 | 291..347 | 100 | -> | Minus |
2R | 11447156..11447208 | 238..290 | 100 | -> | Minus |
2R | 11447270..11447298 | 209..237 | 100 | -> | Minus |
2R | 11447535..11447727 | 15..208 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:54 Download gff for
BO17311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7332217..7332265 | 348..396 | 100 | -> | Minus |
arm_2R | 7333638..7333694 | 291..347 | 100 | -> | Minus |
arm_2R | 7334661..7334713 | 238..290 | 100 | -> | Minus |
arm_2R | 7334775..7334803 | 209..237 | 100 | -> | Minus |
arm_2R | 7335040..7335232 | 15..208 | 96 | | Minus |
BO17311.5prime Sequence
410 bp (410 high quality bases) assembled on 2006-10-13
> BO17311.5prime
GAAGTTATCAGTCGACATGTGGACGCAGAGAAATGCAGTTGGCAATTGGC
TGTTGGTATTAACAGCCGTTATCGGATTTCTAACTTTCATATGGATTCCG
CAGACCTCAGCCGAATGTCAAACGCGATCGATTTACTGCTATGAGTGCGA
CTCCTGGACTGATGCCCGCTGCAAGGATCCTTTCAACTATACAGCCCTGC
CAAGGTGGTGCGACGCATGTGTACGTCACAGTTACAGATCAATTTATTCA
TGGTCGATCACGTGTGCATGGTGGAAGGTTCAGGCAGTGGACGTATGTGC
TTTTGTGAGGAAGATATGTGCAATTCTAGTAAAAATTTACACACTAATGG
TTGCCAGCTGCATCTCATACCCATCGCAGTGGCAGTATCTTGGCGCAAGC
TTTCTAGACC
BO17311.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33472-PA | 255 | CG33472-RA | 1..254 | 17..270 | 1270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qvr-RB | 5055 | CG33472-RB | 725..913 | 17..205 | 945 | 100 | Plus |
qvr-RB | 5055 | CG33472-RB | 984..1175 | 203..394 | 900 | 97.9 | Plus |
qvr-RC | 5046 | CG33472-RC | 975..1166 | 203..394 | 900 | 97.9 | Plus |
qvr-RC | 5046 | CG33472-RC | 725..904 | 17..205 | 455 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11447533..11447724 | 203..394 | 900 | 97.9 | Plus |
2R | 25286936 | 2R | 11446130..11446189 | 63..122 | 300 | 100 | Plus |
2R | 25286936 | 2R | 11447156..11447209 | 123..176 | 270 | 100 | Plus |
2R | 25286936 | 2R | 11444712..11444760 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:03:45 has no hits.
BO17311.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:10 Download gff for
BO17311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33472-PA | 1..255 | 17..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:31 Download gff for
BO17311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qvr-RB | 986..1178 | 205..398 | 96 | | Plus |
qvr-RB | 725..912 | 17..204 | 100 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:59 Download gff for
BO17311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qvr-RB | 725..912 | 17..204 | 100 | -> | Plus |
qvr-RB | 986..1178 | 205..398 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:59 Download gff for
BO17311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11444712..11444760 | 17..65 | 100 | -> | Plus |
2R | 11446133..11446189 | 66..122 | 100 | -> | Plus |
2R | 11447156..11447208 | 123..175 | 100 | -> | Plus |
2R | 11447270..11447298 | 176..204 | 100 | -> | Plus |
2R | 11447535..11447727 | 205..398 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:31 Download gff for
BO17311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7332217..7332265 | 17..65 | 100 | -> | Plus |
arm_2R | 7333638..7333694 | 66..122 | 100 | -> | Plus |
arm_2R | 7334661..7334713 | 123..175 | 100 | -> | Plus |
arm_2R | 7334775..7334803 | 176..204 | 100 | -> | Plus |
arm_2R | 7335040..7335232 | 205..398 | 96 | | Plus |
BO17311.complete Sequence
412 bp assembled on 2006-10-11
GenBank Submission: FJ634075
> BO17311.complete
GAAGTTATCAGTCGACATGTGGACGCAGAGAAATGCAGTTGGCAATTGGC
TGTTGGTATTAACAGCCGTTATCGGATTTCTAACTTTCATATGGATTCCG
CAGACCTCAGCCGAATGTCAAACGCGATCGATTTACTGCTATGAGTGCGA
CTCCTGGACTGATGCCCGCTGCAAGGATCCTTTCAACTATACAGCCCTGC
CAAGGTGGTGCGACGCATGTGTACGTCACAGTTACAGATCAATTTATTCA
TGGTCGATCACGTGTGCATGGTGGAAGGTTCAGGCAGTGGACGTATGTGC
TTTTGTGAGGAAGATATGTGCAATTCTAGTAAAAATTTACACACTAATGG
TTGCCAGCTGCATCTCATACCCATCGCAGTGGCAGTATCTTGGCGCAAGC
TTTCTAGACCAT
BO17311.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qvr-RB | 477 | CG33472-PB | 1..189 | 17..205 | 945 | 100 | Plus |
qvr-RB | 477 | CG33472-PB | 260..451 | 203..394 | 900 | 97.9 | Plus |
qvr-RC | 468 | CG33472-PC | 251..442 | 203..394 | 900 | 97.9 | Plus |
qvr-RC | 468 | CG33472-PC | 96..180 | 121..205 | 425 | 100 | Plus |
qvr-RC | 468 | CG33472-PC | 1..49 | 17..65 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qvr-RB | 5055 | CG33472-RB | 725..913 | 17..205 | 945 | 100 | Plus |
qvr-RB | 5055 | CG33472-RB | 984..1175 | 203..394 | 900 | 97.9 | Plus |
qvr-RC | 5046 | CG33472-RC | 975..1166 | 203..394 | 900 | 97.9 | Plus |
qvr-RC | 5046 | CG33472-RC | 820..904 | 121..205 | 425 | 100 | Plus |
qvr-RC | 5046 | CG33472-RC | 725..773 | 17..65 | 245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11447533..11447724 | 203..394 | 900 | 97.9 | Plus |
2R | 25286936 | 2R | 11446130..11446189 | 63..122 | 300 | 100 | Plus |
2R | 25286936 | 2R | 11447156..11447209 | 123..176 | 270 | 100 | Plus |
2R | 25286936 | 2R | 11444712..11444760 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:52:14 has no hits.
BO17311.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:45 Download gff for
BO17311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33472-RA | 1..255 | 17..271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:01 Download gff for
BO17311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33472-RA | 704..1084 | 17..398 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:21 Download gff for
BO17311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qvr-RB | 725..912 | 17..204 | 100 | -> | Plus |
qvr-RB | 986..1175 | 205..396 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:45 Download gff for
BO17311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33472-RA | 704..1084 | 17..398 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:22 Download gff for
BO17311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qvr-RB | 725..912 | 17..204 | 100 | -> | Plus |
qvr-RB | 986..1175 | 205..396 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:22 Download gff for
BO17311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11444712..11444760 | 17..65 | 100 | -> | Plus |
2R | 11446133..11446189 | 66..122 | 100 | -> | Plus |
2R | 11447156..11447208 | 123..175 | 100 | -> | Plus |
2R | 11447270..11447298 | 176..204 | 100 | -> | Plus |
2R | 11447535..11447724 | 205..396 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:21 Download gff for
BO17311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7332217..7332265 | 17..65 | 100 | -> | Plus |
arm_2R | 7333638..7333694 | 66..122 | 100 | -> | Plus |
arm_2R | 7334661..7334713 | 123..175 | 100 | -> | Plus |
arm_2R | 7334775..7334803 | 176..204 | 100 | -> | Plus |
arm_2R | 7335040..7335229 | 205..396 | 96 | | Plus |
BO17311.pep Sequence
Translation from 16 to 412
> BO17311.pep
MWTQRNAVGNWLLVLTAVIGFLTFIWIPQTSAECQTRSIYCYECDSWTDA
RCKDPFNYTALPRWCDACVRHSYRSIYSWSITCAWWKVQAVDVCAFVRKI
CAILVKIYTLMVASCISYPSQWQYLGASFLDH
BO17311.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qvr-PB | 158 | CG33472-PB | 1..86 | 1..77 | 361 | 81.6 | Plus |
qvr-PC | 155 | CG33472-PC | 1..83 | 1..77 | 248 | 62.5 | Plus |