Clone BO17312 Report

Search the DGRC for BO17312

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptPgk-RA
Protein status:BO17312.pep: Imported from assembly
Sequenced Size:1279

Clone Sequence Records

BO17312.3prime Sequence

698 bp (587 high quality bases) assembled on 2006-10-13

> BO17312.3prime
ATGGTCTAGAAAGCTTGCGGCGCTGGTCAATGCAGCCACGCCTGGCAGTG
TCTTGCCCTCCAGGAGCTCCAGCGAAGCGCCGCCTCCGGTGGAGACGTGC
GAGACGAGTGCCTCCGTGTTCCACTTGGCGCAGCAAGAGGCAGTGTCGCC
GCCGCCGATGATGGAGACGGTGCCGTTCTTGGTGGCGGCCACCACGCCGT
CCATGATGGACTTGGTGCCGTTGGCGAAGTTGGGGAACTCAAAGACACCG
GGGGGTCCGTTCCACACGATGAGCTTGGCGCGTGCGATGGGTGCCGCGAA
GAGCTCACGGGTCTTGGGACCCACATCCAGACCCATGTGTCCATCGGGAA
TTCCGGCCTCCACGGTGGCCTCGCTGACGGCAGCGTTCTCGGCGAACTTG
TCGCCGCAGACAAAGTCCACTGGCAGATGCAACTGCACGTTATTCTTCTT
GGCCTTCTCCACCAGTTTCTCGACGATCTTGGAGCCCTCCTCGTCGAACA
GGGAACCGCCGATCTTCATGTTGTTGAGGACCTTCAGGAAGGTGAAGGCC
ATGCCGCCACCGATGATCATCTCGTTGACCTTGTCCAGAAGGTTCTCAAT
CAGCTGGATCTTGTCGGCCACCTTGGCGCCCACGAGAATTGCCAGGAAGG
GATTTGGTGGCTTGTCCAGGGCCTGCGAGAAGTACTTCAGCTCCTTGT

BO17312.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3127-PA 1248 Pgk-RA 566..1245 698..19 3350 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Pgk-RE 1893 CG3127-RE 1079..1758 698..19 3370 99.7 Minus
Pgk-RD 1865 CG3127-RD 1051..1730 698..19 3370 99.7 Minus
Pgk-RC 1867 CG3127-RC 1053..1732 698..19 3370 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2747311..2747752 257..698 2180 99.5 Plus
2L 23513712 2L 2747015..2747253 19..257 1195 100 Plus
2L 23513712 2L 2743926..2744096 481..651 180 73.7 Plus
Blast to na_te.dros performed on 2015-02-12 00:19:16 has no hits.

BO17312.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:11 Download gff for BO17312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3127-PA 566..1248 15..698 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:58:17 Download gff for BO17312.3prime
Subject Subject Range Query Range Percent Splice Strand
Pgk-RC 1053..1737 13..698 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:44 Download gff for BO17312.3prime
Subject Subject Range Query Range Percent Splice Strand
Pgk-RC 1053..1737 13..698 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:44 Download gff for BO17312.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2747010..2747252 13..256 99 <- Plus
2L 2747311..2747752 257..698 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:58:17 Download gff for BO17312.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2747010..2747252 13..256 99 <- Plus
arm_2L 2747311..2747752 257..698 99   Plus

BO17312.complete Sequence

1279 bp assembled on 2010-06-24

GenBank Submission: KX795241

> BO17312.complete
GAAGTTATCAGTCGACATGGCCTTCAATAAGCTGAGCATCGAAAACCTGG
ACTTGGCGGGCAAGCGGGTGTTGATGCGCGTCGACTTCAATGTGCCCATC
AAGGAGGGCAAGATCACCAGCAACCAGAGAATTGTCGCTGCCTTGGATAG
TATCAAGTTGGCCCTTTCCAAGAAAGCCAAGTCGGTGGTGCTGATGTCCC
ACTTGGGTCGTCCCGATGGCAACAAGAACATCAAGTACACCCTGGCACCC
GTGGCCGCTGAGCTGAAGACCCTGCTTGGCCAGGATGTGATCTTCCTAAG
TGACTGCGTCGGCAGCGAAGTGGAGGCCGCTTGCAAGGATCCCGCACCGG
GATCCGTCATTCTGCTGGAGAACGTCCGCTTCTACGTGGAGGAGGAGGGC
AAGGGCTTGGATGCCAGCGGCGGCAAGGTCAAGGCCGATCCTGCCAAGGT
CAAGGAGTTCCGTGCCAGCCTGGCCAAGCTGGGCGATGTCTATGTCAACG
ACGCCTTCGGCACTGCCCATCGCGCCCACAGTTCCATGATGGGCGATGGC
TTCGAGCAGCGCGCAGCTGGTCTGTTGCTGAACAAGGAGCTGAAGTACTT
CTCGCAGGCCCTGGACAAGCCACCAAATCCCTTCCTGGCAATTCTCGGTG
GCGCCAAGGTGGCCGACAAGATCCAGCTGATTGAGAACCTTCTGGACAAG
GTCAACGAGATGATCATCGGTGGCGGCATGGCCTTCACCTTCCTGAAGGT
CCTCAACAACATGAAGATCGGCGGTTCCCTGTTCGACGAGGAGGGCTCCA
AGATCGTCGAGAAACTGGTGGAGAAGGCCAAGAAGAATAACGTGCAGTTG
CATCTGCCAGTGGACTTTGTCTGCGGCGACAAGTTCGCCGAGAACGCTGC
CGTCAGCGAGGCCACCGTGGAGGCCGGAATTCCCGATGGACACATGGGTC
TGGATGTGGGTCCCAAGACCCGTGAGCTCTTCGCGGCACCCATCGCACGC
GCCAAGCTCATCGTGTGGAACGGACCCCCCGGTGTCTTTGAGTTCCCCAA
CTTCGCCAACGGCACCAAGTCCATCATGGACGGCGTGGTGGCCGCCACCA
AGAACGGCACCGTCTCCATCATCGGCGGCGGCGACACTGCCTCTTGCTGC
GCCAAGTGGAACACGGAGGCACTCGTCTCGCACGTCTCCACCGGAGGCGG
CGCTTCGCTGGAGCTCCTGGAGGGCAAGACACTGCCAGGCGTGGCTGCAT
TGACCAGCGCCGCAAGCTTTCTAGACCAT

BO17312.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pgk-RE 1248 CG3127-PE 1..1245 17..1261 6225 100 Plus
Pgk-RD 1248 CG3127-PD 1..1245 17..1261 6225 100 Plus
Pgk-RC 1248 CG3127-PC 1..1245 17..1261 6225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pgk-RE 1893 CG3127-RE 514..1758 17..1261 6225 100 Plus
Pgk-RD 1865 CG3127-RD 486..1730 17..1261 6225 100 Plus
Pgk-RC 1867 CG3127-RC 488..1732 17..1261 6225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2747311..2748256 1023..78 4730 100 Minus
2L 23513712 2L 2747015..2747253 1261..1023 1195 100 Minus
2L 23513712 2L 2743926..2744300 799..425 480 75.2 Minus
2L 23513712 2L 2748320..2748381 78..17 310 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:45:13 has no hits.

BO17312.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:34 Download gff for BO17312.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RA 142..1386 17..1263 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:51 Download gff for BO17312.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RC 488..1732 17..1263 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:03:06 Download gff for BO17312.complete
Subject Subject Range Query Range Percent Splice Strand
Pgk-RC 488..1732 17..1263 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:03:06 Download gff for BO17312.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2748320..2748381 17..78 100   Minus
2L 2747013..2747252 1024..1263 99 <- Minus
2L 2747311..2748255 79..1023 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:51 Download gff for BO17312.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2747013..2747252 1024..1263 99 <- Minus
arm_2L 2747311..2748255 79..1023 100 <- Minus
arm_2L 2748320..2748381 17..78 100   Minus

BO17312.pep Sequence

Translation from 16 to 1279

> BO17312.pep
MAFNKLSIENLDLAGKRVLMRVDFNVPIKEGKITSNQRIVAALDSIKLAL
SKKAKSVVLMSHLGRPDGNKNIKYTLAPVAAELKTLLGQDVIFLSDCVGS
EVEAACKDPAPGSVILLENVRFYVEEEGKGLDASGGKVKADPAKVKEFRA
SLAKLGDVYVNDAFGTAHRAHSSMMGDGFEQRAAGLLLNKELKYFSQALD
KPPNPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMAFTFLKVLNNMK
IGGSLFDEEGSKIVEKLVEKAKKNNVQLHLPVDFVCGDKFAENAAVSEAT
VEAGIPDGHMGLDVGPKTRELFAAPIARAKLIVWNGPPGVFEFPNFANGT
KSIMDGVVAATKNGTVSIIGGGDTASCCAKWNTEALVSHVSTGGGASLEL
LEGKTLPGVAALTSAASFLDH

BO17312.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pgk-PE 415 CG3127-PE 1..415 1..415 2099 100 Plus
Pgk-PD 415 CG3127-PD 1..415 1..415 2099 100 Plus
Pgk-PC 415 CG3127-PC 1..415 1..415 2099 100 Plus
Pgk-PB 415 CG3127-PB 1..415 1..415 2099 100 Plus
Pgk-PA 415 CG3127-PA 1..415 1..415 2099 100 Plus