Clone Sequence Records
BO17312.3prime Sequence
698 bp (587 high quality bases) assembled on 2006-10-13
> BO17312.3prime
ATGGTCTAGAAAGCTTGCGGCGCTGGTCAATGCAGCCACGCCTGGCAGTG
TCTTGCCCTCCAGGAGCTCCAGCGAAGCGCCGCCTCCGGTGGAGACGTGC
GAGACGAGTGCCTCCGTGTTCCACTTGGCGCAGCAAGAGGCAGTGTCGCC
GCCGCCGATGATGGAGACGGTGCCGTTCTTGGTGGCGGCCACCACGCCGT
CCATGATGGACTTGGTGCCGTTGGCGAAGTTGGGGAACTCAAAGACACCG
GGGGGTCCGTTCCACACGATGAGCTTGGCGCGTGCGATGGGTGCCGCGAA
GAGCTCACGGGTCTTGGGACCCACATCCAGACCCATGTGTCCATCGGGAA
TTCCGGCCTCCACGGTGGCCTCGCTGACGGCAGCGTTCTCGGCGAACTTG
TCGCCGCAGACAAAGTCCACTGGCAGATGCAACTGCACGTTATTCTTCTT
GGCCTTCTCCACCAGTTTCTCGACGATCTTGGAGCCCTCCTCGTCGAACA
GGGAACCGCCGATCTTCATGTTGTTGAGGACCTTCAGGAAGGTGAAGGCC
ATGCCGCCACCGATGATCATCTCGTTGACCTTGTCCAGAAGGTTCTCAAT
CAGCTGGATCTTGTCGGCCACCTTGGCGCCCACGAGAATTGCCAGGAAGG
GATTTGGTGGCTTGTCCAGGGCCTGCGAGAAGTACTTCAGCTCCTTGT
BO17312.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3127-PA | 1248 | Pgk-RA | 566..1245 | 698..19 | 3350 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgk-RE | 1893 | CG3127-RE | 1079..1758 | 698..19 | 3370 | 99.7 | Minus |
Pgk-RD | 1865 | CG3127-RD | 1051..1730 | 698..19 | 3370 | 99.7 | Minus |
Pgk-RC | 1867 | CG3127-RC | 1053..1732 | 698..19 | 3370 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2747311..2747752 | 257..698 | 2180 | 99.5 | Plus |
2L | 23513712 | 2L | 2747015..2747253 | 19..257 | 1195 | 100 | Plus |
2L | 23513712 | 2L | 2743926..2744096 | 481..651 | 180 | 73.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:19:16 has no hits.
BO17312.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:11 Download gff for
BO17312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3127-PA | 566..1248 | 15..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:58:17 Download gff for
BO17312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgk-RC | 1053..1737 | 13..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:44 Download gff for
BO17312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgk-RC | 1053..1737 | 13..698 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:44 Download gff for
BO17312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2747010..2747252 | 13..256 | 99 | <- | Plus |
2L | 2747311..2747752 | 257..698 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:58:17 Download gff for
BO17312.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2747010..2747252 | 13..256 | 99 | <- | Plus |
arm_2L | 2747311..2747752 | 257..698 | 99 | | Plus |
BO17312.complete Sequence
1279 bp assembled on 2010-06-24
GenBank Submission: KX795241
> BO17312.complete
GAAGTTATCAGTCGACATGGCCTTCAATAAGCTGAGCATCGAAAACCTGG
ACTTGGCGGGCAAGCGGGTGTTGATGCGCGTCGACTTCAATGTGCCCATC
AAGGAGGGCAAGATCACCAGCAACCAGAGAATTGTCGCTGCCTTGGATAG
TATCAAGTTGGCCCTTTCCAAGAAAGCCAAGTCGGTGGTGCTGATGTCCC
ACTTGGGTCGTCCCGATGGCAACAAGAACATCAAGTACACCCTGGCACCC
GTGGCCGCTGAGCTGAAGACCCTGCTTGGCCAGGATGTGATCTTCCTAAG
TGACTGCGTCGGCAGCGAAGTGGAGGCCGCTTGCAAGGATCCCGCACCGG
GATCCGTCATTCTGCTGGAGAACGTCCGCTTCTACGTGGAGGAGGAGGGC
AAGGGCTTGGATGCCAGCGGCGGCAAGGTCAAGGCCGATCCTGCCAAGGT
CAAGGAGTTCCGTGCCAGCCTGGCCAAGCTGGGCGATGTCTATGTCAACG
ACGCCTTCGGCACTGCCCATCGCGCCCACAGTTCCATGATGGGCGATGGC
TTCGAGCAGCGCGCAGCTGGTCTGTTGCTGAACAAGGAGCTGAAGTACTT
CTCGCAGGCCCTGGACAAGCCACCAAATCCCTTCCTGGCAATTCTCGGTG
GCGCCAAGGTGGCCGACAAGATCCAGCTGATTGAGAACCTTCTGGACAAG
GTCAACGAGATGATCATCGGTGGCGGCATGGCCTTCACCTTCCTGAAGGT
CCTCAACAACATGAAGATCGGCGGTTCCCTGTTCGACGAGGAGGGCTCCA
AGATCGTCGAGAAACTGGTGGAGAAGGCCAAGAAGAATAACGTGCAGTTG
CATCTGCCAGTGGACTTTGTCTGCGGCGACAAGTTCGCCGAGAACGCTGC
CGTCAGCGAGGCCACCGTGGAGGCCGGAATTCCCGATGGACACATGGGTC
TGGATGTGGGTCCCAAGACCCGTGAGCTCTTCGCGGCACCCATCGCACGC
GCCAAGCTCATCGTGTGGAACGGACCCCCCGGTGTCTTTGAGTTCCCCAA
CTTCGCCAACGGCACCAAGTCCATCATGGACGGCGTGGTGGCCGCCACCA
AGAACGGCACCGTCTCCATCATCGGCGGCGGCGACACTGCCTCTTGCTGC
GCCAAGTGGAACACGGAGGCACTCGTCTCGCACGTCTCCACCGGAGGCGG
CGCTTCGCTGGAGCTCCTGGAGGGCAAGACACTGCCAGGCGTGGCTGCAT
TGACCAGCGCCGCAAGCTTTCTAGACCAT
BO17312.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgk-RE | 1248 | CG3127-PE | 1..1245 | 17..1261 | 6225 | 100 | Plus |
Pgk-RD | 1248 | CG3127-PD | 1..1245 | 17..1261 | 6225 | 100 | Plus |
Pgk-RC | 1248 | CG3127-PC | 1..1245 | 17..1261 | 6225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgk-RE | 1893 | CG3127-RE | 514..1758 | 17..1261 | 6225 | 100 | Plus |
Pgk-RD | 1865 | CG3127-RD | 486..1730 | 17..1261 | 6225 | 100 | Plus |
Pgk-RC | 1867 | CG3127-RC | 488..1732 | 17..1261 | 6225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2747311..2748256 | 1023..78 | 4730 | 100 | Minus |
2L | 23513712 | 2L | 2747015..2747253 | 1261..1023 | 1195 | 100 | Minus |
2L | 23513712 | 2L | 2743926..2744300 | 799..425 | 480 | 75.2 | Minus |
2L | 23513712 | 2L | 2748320..2748381 | 78..17 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:45:13 has no hits.
BO17312.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:34 Download gff for
BO17312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgk-RA | 142..1386 | 17..1263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:51 Download gff for
BO17312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgk-RC | 488..1732 | 17..1263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:03:06 Download gff for
BO17312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pgk-RC | 488..1732 | 17..1263 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:03:06 Download gff for
BO17312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2748320..2748381 | 17..78 | 100 | | Minus |
2L | 2747013..2747252 | 1024..1263 | 99 | <- | Minus |
2L | 2747311..2748255 | 79..1023 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:51 Download gff for
BO17312.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2747013..2747252 | 1024..1263 | 99 | <- | Minus |
arm_2L | 2747311..2748255 | 79..1023 | 100 | <- | Minus |
arm_2L | 2748320..2748381 | 17..78 | 100 | | Minus |
BO17312.pep Sequence
Translation from 16 to 1279
> BO17312.pep
MAFNKLSIENLDLAGKRVLMRVDFNVPIKEGKITSNQRIVAALDSIKLAL
SKKAKSVVLMSHLGRPDGNKNIKYTLAPVAAELKTLLGQDVIFLSDCVGS
EVEAACKDPAPGSVILLENVRFYVEEEGKGLDASGGKVKADPAKVKEFRA
SLAKLGDVYVNDAFGTAHRAHSSMMGDGFEQRAAGLLLNKELKYFSQALD
KPPNPFLAILGGAKVADKIQLIENLLDKVNEMIIGGGMAFTFLKVLNNMK
IGGSLFDEEGSKIVEKLVEKAKKNNVQLHLPVDFVCGDKFAENAAVSEAT
VEAGIPDGHMGLDVGPKTRELFAAPIARAKLIVWNGPPGVFEFPNFANGT
KSIMDGVVAATKNGTVSIIGGGDTASCCAKWNTEALVSHVSTGGGASLEL
LEGKTLPGVAALTSAASFLDH
BO17312.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pgk-PE | 415 | CG3127-PE | 1..415 | 1..415 | 2099 | 100 | Plus |
Pgk-PD | 415 | CG3127-PD | 1..415 | 1..415 | 2099 | 100 | Plus |
Pgk-PC | 415 | CG3127-PC | 1..415 | 1..415 | 2099 | 100 | Plus |
Pgk-PB | 415 | CG3127-PB | 1..415 | 1..415 | 2099 | 100 | Plus |
Pgk-PA | 415 | CG3127-PA | 1..415 | 1..415 | 2099 | 100 | Plus |