Clone Sequence Records
BO17315.3prime Sequence
749 bp (655 high quality bases) assembled on 2006-10-13
> BO17315.3prime
ATGGTCTAGAAAGCTTGCCGAAGCCTGGACGCCGTGAGCCTTTTTCAGTC
CCTGGAACAGCATCAGTTTCTCCCGGTTAACTTCCTTAAGCGTCTGCACC
GCCAGCTCCAGTTGCACCTTCTTCAGCGCATGTTCGCTGGCGATGTACTG
CTCAATGAACTTCAGGCTGATCTCATCGGCGGCGAAATCGTGCTCCGTCT
TGCCAATGGCCGTATGGATCTCCTGCTCAATGTTCTGCTTATTGTCATGT
CGTCGGAAGACGCTTCTTAGCTCCGCCAGGGCACTTTCCGCCGGCGTGGC
ATGCAGTTTGCCCAGTTCGGTCAGCGTTGCCTGATACTCCACTGGGATGT
TGTGTAGCTTGTAGCTCAGAGCAATCAGCTCCACGGCATTGTGCAGATAA
TCCCGACGGATCATGTCATACAGCAGGTCGTCGATGCAGCGGTGCCAAGC
GTAGAAGAAGGCCATGGGTCCAAAGTGGCGGGTGGAGCGCAGAAGATCGA
ACTCCTTGGACTCGTTGAGATGCTCGAACACACGCGCTGAAATGTTGTGG
AACTCCGGCTCATGTGGCTCGTACTGCACCAAGAGTCGATCCAGGATGAA
CTCGTACTTGTGCTCCGCCAAGCACTTGGCCAGCAGCTCCTCCAGCGCGA
ACATTCGTGGAGTATATGACTGGCGACCCTCCAGCGGGAAATACAACTGG
TTCATGCGCTTCGTGGAATCAAGAGTGGCGTAGGCCAAGGTTCCGTCCA
BO17315.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12261-PA | 1182 | mRpS22-RA | 449..1179 | 749..19 | 3630 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS22-RA | 1341 | CG12261-RA | 543..1273 | 749..19 | 3640 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27917450..27918180 | 749..19 | 3640 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:03:57 has no hits.
BO17315.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:13 Download gff for
BO17315.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12261-PA | 450..1182 | 18..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:33 Download gff for
BO17315.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 543..1272 | 19..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:01 Download gff for
BO17315.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 544..1273 | 19..748 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:01 Download gff for
BO17315.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27917451..27918180 | 19..748 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:33 Download gff for
BO17315.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23743173..23743902 | 19..748 | 99 | | Minus |
BO17315.5prime Sequence
639 bp (583 high quality bases) assembled on 2006-10-13
> BO17315.5prime
GAAGTTATCAGTCGACATGCACCTGCTGCGGAGCCTGCGCCAGCTGAATG
GCCTCCAAGGAGTGCGCCAAGCTATCCGGCAGGTGTCCTCGGCGCCCACC
AAGCCCGCCGCCCTGCAGTACGAGCGCGATCCGCAGCCGCTTTTCACGGA
TGCCGAAACCCAGCGGCTGCTCCAGTCCATGACGCAACTGAACTTGGACA
AGGTGTATCGGAAGCGCACGGTGCCGGACAACAGCAGCGAAACGAAGTTC
ATGAGCAACGAGCAGCTGGACAACGAGTTCCAGAACTTGGTGGTGCGGGC
TCAGCAAATTCTGCAAATGCCACCCATTGTGCAGATCAAAAAAGATGTGG
AGCGGGTGATAGCCAAGGATACGGCGCTGAAGGACTTCGCCAACTCCAAG
TTCGTATTCACGGACATCACCTTCGGCCGACGGCAGTCGGAACGCAAGGT
AATCGTCCGGGATATGGACGGAACCTTGGCCTACGCCACTCTTGATACCA
CGAAGCGCATGAACCAGTTGTATTTCCCGCTGGAGGGTCGCCAGTCATAT
ACTCCACGAATGTTCGCGCTGGAGGAGCTGCTGGCCAAGTGCTTGGCGGA
GCACAAGTACGAGTTCATCCTGGATCGACTCTTGGTGCA
BO17315.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12261-PA | 1182 | mRpS22-RA | 1..623 | 17..639 | 3115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS22-RA | 1341 | CG12261-RA | 95..717 | 17..639 | 3115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27917002..27917624 | 17..639 | 3115 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:53:40 has no hits.
BO17315.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:13 Download gff for
BO17315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12261-PA | 1..622 | 17..638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:36 Download gff for
BO17315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 94..715 | 17..638 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:12:36 Download gff for
BO17315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 95..716 | 17..638 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:36 Download gff for
BO17315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27917002..27917623 | 17..638 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:36 Download gff for
BO17315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23742724..23743345 | 17..638 | 100 | | Plus |
BO17315.complete Sequence
1213 bp assembled on 2006-10-11
GenBank Submission: FJ634076
> BO17315.complete
GAAGTTATCAGTCGACATGCACCTGCTGCGGAGCCTGCGCCAGCTGAATG
GCCTCCAAGGAGTGCGCCAAGCTATCCGGCAGGTGTCCTCGGCGCCCACC
AAGCCCGCCGCCCTGCAGTACGAGCGCGATCCGCAGCCGCTTTTCACGGA
TGCCGAAACCCAGCGGCTGCTCCAGTCCATGACGCAACTGAACTTGGACA
AGGTGTATCGGAAGCGCACGGTGCCGGACAACAGCAGCGAAACGAAGTTC
ATGAGCAACGAGCAGCTGGACAACGAGTTCCAGAACTTGGTGGTGCGGGC
TCAGCAAATTCTGCAAATGCCACCCATTGTGCAGATCAAAAAAGATGTGG
AGCGGGTGATAGCCAAGGATACGGCGCTGAAGGACTTCGCCAACTCCAAG
TTCGTATTCACGGACATCACCTTCGGCCGACGGCAGTCGGAACGCAAGGT
AATCGTCCGGGATATGGACGGAACCTTGGCCTACGCCACTCTTGATACCA
CGAAGCGCATGAACCAGTTGTATTTCCCGCTGGAGGGTCGCCAGTCATAT
ACTCCACGAATGTTCGCGCTGGAGGAGCTGCTGGCCAAGTGCTTGGCGGA
GCACAAGTACGAGTTCATCCTGGATCGACTCTTGGTGCAGTACGAGCCAC
ATGAGCCGGAGTTCCACAACATTTCAGCGCGTGTGTTCGAGCATCTCAAC
GAGTCCAAGGAGTTCGATCTTCTGCGCTCCACCCGCCACTTTGGACCCAT
GGCCTTCTTCTACGCTTGGCACCGCTGCATCGACGACCTGCTGTATGACA
TGATCCGTCGGGATTATCTGCACAATGCCGTGGAGCTGATTGCTCTGAGC
TACAAGCTACACAACATCCCAGTGGAGTATCAGGCAACGCTGACCGAACT
GGGCAAACTGCATGCCACGCCGGCGGAAAGTGCCCTGGCGGAGCTAAGAA
GCGTCTTCCGACGACATGACAATAAGCAGAACATTGAGCAGGAGATCCAT
ACGGCCATTGGCAAGACGGAGCACGATTTCGCCGCCGATGAGATCAGCCT
GAAGTTCATTGAGCAGTACATCGCCAGCGAACATGCGCTGAAGAAGGTGC
AACTGGAGCTGGCGGTGCAGACGCTTAAGGAAGTTAACCGGGAGAAACTG
ATGCTGTTCCAGGGACTGAAAAAGGCTCACGGCGTCCAGGCTTCGGCAAG
CTTTCTAGACCAT
BO17315.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS22-RA | 1182 | CG12261-PA | 1..1179 | 17..1195 | 5895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS22-RA | 1341 | CG12261-RA | 95..1273 | 17..1195 | 5895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27917002..27918180 | 17..1195 | 5895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:23:16 has no hits.
BO17315.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:26 Download gff for
BO17315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 1..1182 | 17..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:36 Download gff for
BO17315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 94..1272 | 17..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:04 Download gff for
BO17315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 94..1272 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:26 Download gff for
BO17315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 94..1272 | 17..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:28 Download gff for
BO17315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS22-RA | 95..1273 | 17..1197 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:28 Download gff for
BO17315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27917002..27918180 | 17..1197 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:04 Download gff for
BO17315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23742724..23743902 | 17..1197 | 99 | | Plus |
BO17315.pep Sequence
Translation from 16 to 1213
> BO17315.pep
MHLLRSLRQLNGLQGVRQAIRQVSSAPTKPAALQYERDPQPLFTDAETQR
LLQSMTQLNLDKVYRKRTVPDNSSETKFMSNEQLDNEFQNLVVRAQQILQ
MPPIVQIKKDVERVIAKDTALKDFANSKFVFTDITFGRRQSERKVIVRDM
DGTLAYATLDTTKRMNQLYFPLEGRQSYTPRMFALEELLAKCLAEHKYEF
ILDRLLVQYEPHEPEFHNISARVFEHLNESKEFDLLRSTRHFGPMAFFYA
WHRCIDDLLYDMIRRDYLHNAVELIALSYKLHNIPVEYQATLTELGKLHA
TPAESALAELRSVFRRHDNKQNIEQEIHTAIGKTEHDFAADEISLKFIEQ
YIASEHALKKVQLELAVQTLKEVNREKLMLFQGLKKAHGVQASASFLDH
BO17315.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS22-PA | 393 | CG12261-PA | 1..393 | 1..393 | 2005 | 100 | Plus |
