Clone Sequence Records
BO17328.3prime Sequence
876 bp (752 high quality bases) assembled on 2006-10-13
> BO17328.3prime
ATGGTCTAGAAAGCTTGCGTAGACGCCGTTGATGTTATTGTGGGTGGCTG
AATAATGGTTCGGATCCTGCCTCCTCCGCGATGACCGGTGGTTGGAATTG
CCGCCATCGCTGCCCGTCACCTTCTCGGCCTCCATGCGTCCGGATAGAAA
GCTGGCCACGCGCTCCAGGTAGGCATTGGTCAGGCCCTGAAGGCTACCAT
AGAACGCCAGCATGCGCTTGAAAAGAGATTCAGCTTCCTCTTTGGAGATG
GTTTTAACCTTGTCCAGCCGTGAGATTGTGATGATGCGGTGGTTGATATA
GATAATATGGTGGGCAACCTCTGTTGTCGTGTGCGCCAGGTTTCTGGGTA
TGTTGGCTGCCACATGAGCACTGAAGTTCACTAGATGAACCACACGCCTA
GCCGATTCGCGGGTCAGTAGCACAATCAACTGCTCCAGAGTGGCGGGCCT
CGCTTGATTTTCGGGTTCATCTGCACTGAGATAGACCCACAGTTCCTTGG
CCTTTTGAACGGCCTGCTTGGGATCGGTGGCAATCAATTCTGCGGCATAG
AAGAGCACGTGGATCGCCTCCTTGCTCTGCTTTTTGAGGGCGCGAGCCTC
TGCGATGGTTCTTTGGGTAAGGCGGCGCTTCAGTTTGCGGGAGAAGCGTT
GACCATGATGGATCGCCTTGATGGCGCCCCTCTCGTCCGGCACGGCCTCG
TTATCATCCTCCTGTGGGCCATCGGTCTGATCCTGATCTGTTTGGATGGG
CACCAGGTACTTGTCCACGAACTTATCGCCGACTGTGAAAGCGCCATCAA
TGCGCTCGGCTGCATAAGTGGTAAGTGGACTCTCAAGGACAGCATTACCG
ATTTGCTTGACAGAATCGGCGCGTTT
BO17328.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10374-PC | 1218 | Lsd-1-RC | 358..1215 | 876..19 | 4265 | 99.8 | Minus |
CG10374-PB | 978 | Lsd-1-RB | 118..975 | 876..19 | 4265 | 99.8 | Minus |
CG10374-PA | 1296 | Lsd-1-RA | 593..1293 | 719..19 | 3505 | 100 | Minus |
CG10374-PA | 1296 | Lsd-1-RA | 358..514 | 876..720 | 760 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-1-RD | 1432 | CG10374-RD | 433..1290 | 876..19 | 4275 | 99.9 | Minus |
Lsd-1-RB | 1501 | CG10374-RB | 502..1359 | 876..19 | 4275 | 99.9 | Minus |
Lsd-1-RC | 1813 | CG10374-RC | 814..1671 | 876..19 | 4275 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23765875..23766066 | 535..344 | 960 | 100 | Minus |
3R | 32079331 | 3R | 23765511..23765696 | 720..535 | 930 | 100 | Minus |
3R | 32079331 | 3R | 23766127..23766308 | 346..165 | 910 | 100 | Minus |
3R | 32079331 | 3R | 23764803..23764960 | 876..719 | 775 | 99.4 | Minus |
3R | 32079331 | 3R | 23766373..23766520 | 166..19 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:06:19 has no hits.
BO17328.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:24 Download gff for
BO17328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10374-PB | 118..978 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:43 Download gff for
BO17328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 814..1678 | 10..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:23:12 Download gff for
BO17328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 814..1678 | 10..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:12 Download gff for
BO17328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23764803..23764959 | 720..876 | 99 | -> | Minus |
3R | 23765512..23765696 | 535..719 | 100 | -> | Minus |
3R | 23765876..23766066 | 344..534 | 100 | -> | Minus |
3R | 23766130..23766307 | 166..343 | 100 | -> | Minus |
3R | 23766374..23766527 | 10..165 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:43 Download gff for
BO17328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19590525..19590681 | 720..876 | 99 | -> | Minus |
arm_3R | 19591234..19591418 | 535..719 | 100 | -> | Minus |
arm_3R | 19591598..19591788 | 344..534 | 100 | -> | Minus |
arm_3R | 19591852..19592029 | 166..343 | 100 | -> | Minus |
arm_3R | 19592096..19592249 | 10..165 | 97 | | Minus |
BO17328.5prime Sequence
894 bp (769 high quality bases) assembled on 2006-10-13
> BO17328.5prime
GAAGTTATCAGTCGACATGGCAACTGCAACCAGCGGCAGTGGACTCCATC
TGGAGGCCATCGATCGCATCGGCTCCATTCCCCTTGTGGAATCCAGTGTG
AAGCGGGTGGAGACCATCTACGATAAGGTGAAGAACAACAATAGGCTATT
CTCATGGTATTTTGAGACGGCGGAGGCCACCATTTCGGCCGCCTACGAAA
CCATCCAGCCGGCGGTCAAGCTCTTCGAGCCATCCATTCAGCGCCTGGAC
AACGTGATGTGCAAAAGCCTGGACATTCTGGAGCAGCGCATACCACTGGT
CTATCTGCCGCCCGAAATGATGTACTGGAACACCAAGGAGTACATGTCCG
ATCACCTGGTGCGTCCGGTTCTGAAACGCGCCGATTCTGTCAAGCAAATC
GGTAATGCTGTCCTCGAGAGTCCACTTACCACTTATGCAGCCGAGCGCAT
TGATGGCGCTTTCACAGTCGGCGATAAGTTCGTGGACAAGTACCTGGTGC
CCATCCAAACAGATCAGGATCAGACCGATGGCCCACAGGAGGATGATAAC
GAGGCCGTGCCGGACGAGAGGGGCGCCATCAAGGCGATCCATCATGGTCA
ACGCTTCTCCCGCAAACTGAAGCGCCGCCTTACCCAAAGAACCATCGCAG
AGGCTCGCGCCCTCAAAAAGCAGAGCAAGGAGGCGATCCACGTGCTCTTC
TATGCCGCAGAATTGATTGCCACCGATCCCAAGCAGGCCGTTCAAAAGGC
CAAGGAACTGTGGGTCTATCTCAGTGCAGATGAACCCGAAAATCAAGCGA
GGGCCGCCACTCTGGAACAGTTGATTGTGCTACTGACCCGCGAATCGGCT
AGGCGTGTGGTTCATCTAGTGAACTTCAGTGCTCATGGGGGAAC
BO17328.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10374-PC | 1218 | Lsd-1-RC | 1..871 | 17..887 | 4305 | 99.7 | Plus |
CG10374-PB | 978 | Lsd-1-RB | 1..631 | 257..887 | 3105 | 99.6 | Plus |
CG10374-PA | 1296 | Lsd-1-RA | 1..514 | 17..530 | 2570 | 100 | Plus |
CG10374-PA | 1296 | Lsd-1-RA | 593..949 | 531..887 | 1735 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-1-RD | 1432 | CG10374-RD | 76..946 | 17..887 | 4325 | 99.8 | Plus |
Lsd-1-RC | 1813 | CG10374-RC | 457..1327 | 17..887 | 4325 | 99.8 | Plus |
Lsd-1-RB | 1501 | CG10374-RB | 148..1015 | 20..887 | 4310 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23764385..23764684 | 20..319 | 1500 | 100 | Plus |
3R | 32079331 | 3R | 23764748..23764960 | 319..531 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 23765511..23765696 | 530..715 | 930 | 100 | Plus |
3R | 32079331 | 3R | 23765875..23766047 | 715..887 | 835 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:02:41 has no hits.
BO17328.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:25 Download gff for
BO17328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10374-PC | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:05 Download gff for
BO17328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 452..1334 | 9..894 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:07 Download gff for
BO17328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 452..1334 | 9..894 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:07 Download gff for
BO17328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23764383..23764684 | 16..319 | 99 | -> | Plus |
3R | 23764749..23764959 | 320..530 | 100 | -> | Plus |
3R | 23765512..23765696 | 531..715 | 100 | -> | Plus |
3R | 23765876..23766054 | 716..894 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:05 Download gff for
BO17328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19590105..19590406 | 16..319 | 99 | -> | Plus |
arm_3R | 19590471..19590681 | 320..530 | 100 | -> | Plus |
arm_3R | 19591234..19591418 | 531..715 | 100 | -> | Plus |
arm_3R | 19591598..19591776 | 716..894 | 97 | | Plus |
BO17328.complete Sequence
1249 bp assembled on 2006-10-11
GenBank Submission: FJ634077
> BO17328.complete
GAAGTTATCAGTCGACATGGCAACTGCAACCAGCGGCAGTGGACTCCATC
TGGAGGCCATCGATCGCATCGGCTCCATTCCCCTTGTGGAATCCAGTGTG
AAGCGGGTGGAGACCATCTACGATAAGGTGAAGAACAACAATAGGCTATT
CTCATGGTATTTTGAGACGGCGGAGGCCACCATTTCGGCCGCCTACGAAA
CCATCCAGCCGGCGGTCAAGCTCTTCGAGCCATCCATTCAGCGCCTGGAC
AACGTGATGTGCAAAAGCCTGGACATTCTGGAGCAGCGCATACCACTGGT
CTATCTGCCGCCCGAAATGATGTACTGGAACACCAAGGAGTACATGTCCG
ATCACCTGGTGCGTCCGGTTCTGAAACGCGCCGATTCTGTCAAGCAAATC
GGTAATGCTGTCCTCGAGAGTCCACTTACCACTTATGCAGCCGAGCGCAT
TGATGGCGCTTTCACAGTCGGCGATAAGTTCGTGGACAAGTACCTGGTGC
CCATCCAAACAGATCAGGATCAGACCGATGGCCCACAGGAGGATGATAAC
GAGGCCGTGCCGGACGAGAGGGGCGCCATCAAGGCGATCCATCATGGTCA
ACGCTTCTCCCGCAAACTGAAGCGCCGCCTTACCCAAAGAACCATCGCAG
AGGCTCGCGCCCTCAAAAAGCAGAGCAAGGAGGCGATCCACGTGCTCTTC
TATGCCGCAGAATTGATTGCCACCGATCCCAAGCAGGCCGTTCAAAAGGC
CAAGGAACTGTGGGTCTATCTCAGTGCAGATGAACCCGAAAATCAAGCGA
GGCCCGCCACTCTGGAGCAGTTGATTGTGCTACTGACCCGCGAATCGGCT
AGGCGTGTGGTTCATCTAGTGAACTTCAGTGCTCATGTGGCAGCCAACAT
ACCCAGAAACCTGGCGCACACGACAACAGAGGTTGCCCACCATATTATCT
ATATCAACCACCGCATCATCACAATCTCACGGCTGGACAAGGTTAAAACC
ATCTCCAAAGAGGAAGCTGAATCTCTTTTCAAGCGCATGCTGGCGTTCTA
TGGTAGCCTTCAGGGCCTGACCAATGCCTACCTGGAGCGCGTGGCCAGCT
TTCTATCCGGACGCATGGAGGCCGAGAAGGTGACGGGCAGCGATGGCGGC
AATTCCAACCACCGGTCATCGCGGAGGAGGCAGGATCCGAACCATTATTC
AGCCACCCACAATAACATCAACGGCGTCTACGCAAGCTTTCTAGACCAT
BO17328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-1-RD | 1218 | CG10374-PD | 1..1215 | 17..1231 | 6075 | 100 | Plus |
Lsd-1-RC | 1218 | CG10374-PC | 1..1215 | 17..1231 | 6075 | 100 | Plus |
Lsd-1-RB | 978 | CG10374-PB | 1..975 | 257..1231 | 4875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-1-RD | 1432 | CG10374-RD | 76..1290 | 17..1231 | 6075 | 100 | Plus |
Lsd-1-RC | 1813 | CG10374-RC | 457..1671 | 17..1231 | 6075 | 100 | Plus |
Lsd-1-RB | 1501 | CG10374-RB | 148..1359 | 20..1231 | 6060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23764385..23764684 | 20..319 | 1500 | 100 | Plus |
3R | 32079331 | 3R | 23764748..23764960 | 319..531 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 23765875..23766066 | 715..906 | 960 | 100 | Plus |
3R | 32079331 | 3R | 23765511..23765696 | 530..715 | 930 | 100 | Plus |
3R | 32079331 | 3R | 23766127..23766308 | 904..1085 | 910 | 100 | Plus |
3R | 32079331 | 3R | 23766373..23766520 | 1084..1231 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:47:41 has no hits.
BO17328.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:27 Download gff for
BO17328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 1..1218 | 17..1232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:37 Download gff for
BO17328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 452..1678 | 9..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:36 Download gff for
BO17328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 457..1671 | 17..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:27 Download gff for
BO17328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 452..1678 | 9..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:00 Download gff for
BO17328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lsd-1-RC | 457..1671 | 17..1233 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:00 Download gff for
BO17328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23764384..23764684 | 17..319 | 99 | -> | Plus |
3R | 23764749..23764959 | 320..530 | 100 | -> | Plus |
3R | 23765512..23765696 | 531..715 | 100 | -> | Plus |
3R | 23765876..23766066 | 716..906 | 100 | -> | Plus |
3R | 23766130..23766307 | 907..1084 | 100 | -> | Plus |
3R | 23766374..23766520 | 1085..1233 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:36 Download gff for
BO17328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19590106..19590406 | 17..319 | 99 | -> | Plus |
arm_3R | 19590471..19590681 | 320..530 | 100 | -> | Plus |
arm_3R | 19591234..19591418 | 531..715 | 100 | -> | Plus |
arm_3R | 19591598..19591788 | 716..906 | 100 | -> | Plus |
arm_3R | 19591852..19592029 | 907..1084 | 100 | -> | Plus |
arm_3R | 19592096..19592242 | 1085..1233 | 98 | | Plus |
BO17328.pep Sequence
Translation from 16 to 1249
> BO17328.pep
MATATSGSGLHLEAIDRIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFE
TAEATISAAYETIQPAVKLFEPSIQRLDNVMCKSLDILEQRIPLVYLPPE
MMYWNTKEYMSDHLVRPVLKRADSVKQIGNAVLESPLTTYAAERIDGAFT
VGDKFVDKYLVPIQTDQDQTDGPQEDDNEAVPDERGAIKAIHHGQRFSRK
LKRRLTQRTIAEARALKKQSKEAIHVLFYAAELIATDPKQAVQKAKELWV
YLSADEPENQARPATLEQLIVLLTRESARRVVHLVNFSAHVAANIPRNLA
HTTTEVAHHIIYINHRIITISRLDKVKTISKEEAESLFKRMLAFYGSLQG
LTNAYLERVASFLSGRMEAEKVTGSDGGNSNHRSSRRRQDPNHYSATHNN
INGVYASFLDH
BO17328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lsd-1-PD | 405 | CG10374-PD | 1..405 | 1..405 | 2059 | 100 | Plus |
Lsd-1-PC | 405 | CG10374-PC | 1..405 | 1..405 | 2059 | 100 | Plus |
Lsd-1-PA | 431 | CG10374-PA | 1..431 | 1..405 | 2016 | 93.7 | Plus |
Lsd-1-PB | 325 | CG10374-PB | 1..325 | 81..405 | 1660 | 100 | Plus |
Lsd-2-PB | 335 | CG9057-PB | 36..251 | 11..218 | 205 | 25.4 | Plus |