Clone BO17328 Report

Search the DGRC for BO17328

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptLsd-1-RC
Protein status:BO17328.pep: validated full length
Sequenced Size:1249

Clone Sequence Records

BO17328.3prime Sequence

876 bp (752 high quality bases) assembled on 2006-10-13

> BO17328.3prime
ATGGTCTAGAAAGCTTGCGTAGACGCCGTTGATGTTATTGTGGGTGGCTG
AATAATGGTTCGGATCCTGCCTCCTCCGCGATGACCGGTGGTTGGAATTG
CCGCCATCGCTGCCCGTCACCTTCTCGGCCTCCATGCGTCCGGATAGAAA
GCTGGCCACGCGCTCCAGGTAGGCATTGGTCAGGCCCTGAAGGCTACCAT
AGAACGCCAGCATGCGCTTGAAAAGAGATTCAGCTTCCTCTTTGGAGATG
GTTTTAACCTTGTCCAGCCGTGAGATTGTGATGATGCGGTGGTTGATATA
GATAATATGGTGGGCAACCTCTGTTGTCGTGTGCGCCAGGTTTCTGGGTA
TGTTGGCTGCCACATGAGCACTGAAGTTCACTAGATGAACCACACGCCTA
GCCGATTCGCGGGTCAGTAGCACAATCAACTGCTCCAGAGTGGCGGGCCT
CGCTTGATTTTCGGGTTCATCTGCACTGAGATAGACCCACAGTTCCTTGG
CCTTTTGAACGGCCTGCTTGGGATCGGTGGCAATCAATTCTGCGGCATAG
AAGAGCACGTGGATCGCCTCCTTGCTCTGCTTTTTGAGGGCGCGAGCCTC
TGCGATGGTTCTTTGGGTAAGGCGGCGCTTCAGTTTGCGGGAGAAGCGTT
GACCATGATGGATCGCCTTGATGGCGCCCCTCTCGTCCGGCACGGCCTCG
TTATCATCCTCCTGTGGGCCATCGGTCTGATCCTGATCTGTTTGGATGGG
CACCAGGTACTTGTCCACGAACTTATCGCCGACTGTGAAAGCGCCATCAA
TGCGCTCGGCTGCATAAGTGGTAAGTGGACTCTCAAGGACAGCATTACCG
ATTTGCTTGACAGAATCGGCGCGTTT

BO17328.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10374-PC 1218 Lsd-1-RC 358..1215 876..19 4265 99.8 Minus
CG10374-PB 978 Lsd-1-RB 118..975 876..19 4265 99.8 Minus
CG10374-PA 1296 Lsd-1-RA 593..1293 719..19 3505 100 Minus
CG10374-PA 1296 Lsd-1-RA 358..514 876..720 760 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-1-RD 1432 CG10374-RD 433..1290 876..19 4275 99.9 Minus
Lsd-1-RB 1501 CG10374-RB 502..1359 876..19 4275 99.9 Minus
Lsd-1-RC 1813 CG10374-RC 814..1671 876..19 4275 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23765875..23766066 535..344 960 100 Minus
3R 32079331 3R 23765511..23765696 720..535 930 100 Minus
3R 32079331 3R 23766127..23766308 346..165 910 100 Minus
3R 32079331 3R 23764803..23764960 876..719 775 99.4 Minus
3R 32079331 3R 23766373..23766520 166..19 740 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:06:19 has no hits.

BO17328.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:24 Download gff for BO17328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10374-PB 118..978 18..876 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:43 Download gff for BO17328.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 814..1678 10..876 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:23:12 Download gff for BO17328.3prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 814..1678 10..876 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:12 Download gff for BO17328.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23764803..23764959 720..876 99 -> Minus
3R 23765512..23765696 535..719 100 -> Minus
3R 23765876..23766066 344..534 100 -> Minus
3R 23766130..23766307 166..343 100 -> Minus
3R 23766374..23766527 10..165 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:43 Download gff for BO17328.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19590525..19590681 720..876 99 -> Minus
arm_3R 19591234..19591418 535..719 100 -> Minus
arm_3R 19591598..19591788 344..534 100 -> Minus
arm_3R 19591852..19592029 166..343 100 -> Minus
arm_3R 19592096..19592249 10..165 97   Minus

BO17328.5prime Sequence

894 bp (769 high quality bases) assembled on 2006-10-13

> BO17328.5prime
GAAGTTATCAGTCGACATGGCAACTGCAACCAGCGGCAGTGGACTCCATC
TGGAGGCCATCGATCGCATCGGCTCCATTCCCCTTGTGGAATCCAGTGTG
AAGCGGGTGGAGACCATCTACGATAAGGTGAAGAACAACAATAGGCTATT
CTCATGGTATTTTGAGACGGCGGAGGCCACCATTTCGGCCGCCTACGAAA
CCATCCAGCCGGCGGTCAAGCTCTTCGAGCCATCCATTCAGCGCCTGGAC
AACGTGATGTGCAAAAGCCTGGACATTCTGGAGCAGCGCATACCACTGGT
CTATCTGCCGCCCGAAATGATGTACTGGAACACCAAGGAGTACATGTCCG
ATCACCTGGTGCGTCCGGTTCTGAAACGCGCCGATTCTGTCAAGCAAATC
GGTAATGCTGTCCTCGAGAGTCCACTTACCACTTATGCAGCCGAGCGCAT
TGATGGCGCTTTCACAGTCGGCGATAAGTTCGTGGACAAGTACCTGGTGC
CCATCCAAACAGATCAGGATCAGACCGATGGCCCACAGGAGGATGATAAC
GAGGCCGTGCCGGACGAGAGGGGCGCCATCAAGGCGATCCATCATGGTCA
ACGCTTCTCCCGCAAACTGAAGCGCCGCCTTACCCAAAGAACCATCGCAG
AGGCTCGCGCCCTCAAAAAGCAGAGCAAGGAGGCGATCCACGTGCTCTTC
TATGCCGCAGAATTGATTGCCACCGATCCCAAGCAGGCCGTTCAAAAGGC
CAAGGAACTGTGGGTCTATCTCAGTGCAGATGAACCCGAAAATCAAGCGA
GGGCCGCCACTCTGGAACAGTTGATTGTGCTACTGACCCGCGAATCGGCT
AGGCGTGTGGTTCATCTAGTGAACTTCAGTGCTCATGGGGGAAC

BO17328.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10374-PC 1218 Lsd-1-RC 1..871 17..887 4305 99.7 Plus
CG10374-PB 978 Lsd-1-RB 1..631 257..887 3105 99.6 Plus
CG10374-PA 1296 Lsd-1-RA 1..514 17..530 2570 100 Plus
CG10374-PA 1296 Lsd-1-RA 593..949 531..887 1735 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-1-RD 1432 CG10374-RD 76..946 17..887 4325 99.8 Plus
Lsd-1-RC 1813 CG10374-RC 457..1327 17..887 4325 99.8 Plus
Lsd-1-RB 1501 CG10374-RB 148..1015 20..887 4310 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23764385..23764684 20..319 1500 100 Plus
3R 32079331 3R 23764748..23764960 319..531 1065 100 Plus
3R 32079331 3R 23765511..23765696 530..715 930 100 Plus
3R 32079331 3R 23765875..23766047 715..887 835 98.8 Plus
Blast to na_te.dros performed on 2015-02-12 04:02:41 has no hits.

BO17328.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:25 Download gff for BO17328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10374-PC 1..878 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:05 Download gff for BO17328.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 452..1334 9..894 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:07 Download gff for BO17328.5prime
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 452..1334 9..894 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:07 Download gff for BO17328.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23764383..23764684 16..319 99 -> Plus
3R 23764749..23764959 320..530 100 -> Plus
3R 23765512..23765696 531..715 100 -> Plus
3R 23765876..23766054 716..894 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:05 Download gff for BO17328.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19590105..19590406 16..319 99 -> Plus
arm_3R 19590471..19590681 320..530 100 -> Plus
arm_3R 19591234..19591418 531..715 100 -> Plus
arm_3R 19591598..19591776 716..894 97   Plus

BO17328.complete Sequence

1249 bp assembled on 2006-10-11

GenBank Submission: FJ634077

> BO17328.complete
GAAGTTATCAGTCGACATGGCAACTGCAACCAGCGGCAGTGGACTCCATC
TGGAGGCCATCGATCGCATCGGCTCCATTCCCCTTGTGGAATCCAGTGTG
AAGCGGGTGGAGACCATCTACGATAAGGTGAAGAACAACAATAGGCTATT
CTCATGGTATTTTGAGACGGCGGAGGCCACCATTTCGGCCGCCTACGAAA
CCATCCAGCCGGCGGTCAAGCTCTTCGAGCCATCCATTCAGCGCCTGGAC
AACGTGATGTGCAAAAGCCTGGACATTCTGGAGCAGCGCATACCACTGGT
CTATCTGCCGCCCGAAATGATGTACTGGAACACCAAGGAGTACATGTCCG
ATCACCTGGTGCGTCCGGTTCTGAAACGCGCCGATTCTGTCAAGCAAATC
GGTAATGCTGTCCTCGAGAGTCCACTTACCACTTATGCAGCCGAGCGCAT
TGATGGCGCTTTCACAGTCGGCGATAAGTTCGTGGACAAGTACCTGGTGC
CCATCCAAACAGATCAGGATCAGACCGATGGCCCACAGGAGGATGATAAC
GAGGCCGTGCCGGACGAGAGGGGCGCCATCAAGGCGATCCATCATGGTCA
ACGCTTCTCCCGCAAACTGAAGCGCCGCCTTACCCAAAGAACCATCGCAG
AGGCTCGCGCCCTCAAAAAGCAGAGCAAGGAGGCGATCCACGTGCTCTTC
TATGCCGCAGAATTGATTGCCACCGATCCCAAGCAGGCCGTTCAAAAGGC
CAAGGAACTGTGGGTCTATCTCAGTGCAGATGAACCCGAAAATCAAGCGA
GGCCCGCCACTCTGGAGCAGTTGATTGTGCTACTGACCCGCGAATCGGCT
AGGCGTGTGGTTCATCTAGTGAACTTCAGTGCTCATGTGGCAGCCAACAT
ACCCAGAAACCTGGCGCACACGACAACAGAGGTTGCCCACCATATTATCT
ATATCAACCACCGCATCATCACAATCTCACGGCTGGACAAGGTTAAAACC
ATCTCCAAAGAGGAAGCTGAATCTCTTTTCAAGCGCATGCTGGCGTTCTA
TGGTAGCCTTCAGGGCCTGACCAATGCCTACCTGGAGCGCGTGGCCAGCT
TTCTATCCGGACGCATGGAGGCCGAGAAGGTGACGGGCAGCGATGGCGGC
AATTCCAACCACCGGTCATCGCGGAGGAGGCAGGATCCGAACCATTATTC
AGCCACCCACAATAACATCAACGGCGTCTACGCAAGCTTTCTAGACCAT

BO17328.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-1-RD 1218 CG10374-PD 1..1215 17..1231 6075 100 Plus
Lsd-1-RC 1218 CG10374-PC 1..1215 17..1231 6075 100 Plus
Lsd-1-RB 978 CG10374-PB 1..975 257..1231 4875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-1-RD 1432 CG10374-RD 76..1290 17..1231 6075 100 Plus
Lsd-1-RC 1813 CG10374-RC 457..1671 17..1231 6075 100 Plus
Lsd-1-RB 1501 CG10374-RB 148..1359 20..1231 6060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23764385..23764684 20..319 1500 100 Plus
3R 32079331 3R 23764748..23764960 319..531 1065 100 Plus
3R 32079331 3R 23765875..23766066 715..906 960 100 Plus
3R 32079331 3R 23765511..23765696 530..715 930 100 Plus
3R 32079331 3R 23766127..23766308 904..1085 910 100 Plus
3R 32079331 3R 23766373..23766520 1084..1231 740 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:47:41 has no hits.

BO17328.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:27 Download gff for BO17328.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 1..1218 17..1232 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:37 Download gff for BO17328.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 452..1678 9..1240 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:36 Download gff for BO17328.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 457..1671 17..1233 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:27 Download gff for BO17328.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 452..1678 9..1240 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:00 Download gff for BO17328.complete
Subject Subject Range Query Range Percent Splice Strand
Lsd-1-RC 457..1671 17..1233 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:00 Download gff for BO17328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23764384..23764684 17..319 99 -> Plus
3R 23764749..23764959 320..530 100 -> Plus
3R 23765512..23765696 531..715 100 -> Plus
3R 23765876..23766066 716..906 100 -> Plus
3R 23766130..23766307 907..1084 100 -> Plus
3R 23766374..23766520 1085..1233 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:36 Download gff for BO17328.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19590106..19590406 17..319 99 -> Plus
arm_3R 19590471..19590681 320..530 100 -> Plus
arm_3R 19591234..19591418 531..715 100 -> Plus
arm_3R 19591598..19591788 716..906 100 -> Plus
arm_3R 19591852..19592029 907..1084 100 -> Plus
arm_3R 19592096..19592242 1085..1233 98   Plus

BO17328.pep Sequence

Translation from 16 to 1249

> BO17328.pep
MATATSGSGLHLEAIDRIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFE
TAEATISAAYETIQPAVKLFEPSIQRLDNVMCKSLDILEQRIPLVYLPPE
MMYWNTKEYMSDHLVRPVLKRADSVKQIGNAVLESPLTTYAAERIDGAFT
VGDKFVDKYLVPIQTDQDQTDGPQEDDNEAVPDERGAIKAIHHGQRFSRK
LKRRLTQRTIAEARALKKQSKEAIHVLFYAAELIATDPKQAVQKAKELWV
YLSADEPENQARPATLEQLIVLLTRESARRVVHLVNFSAHVAANIPRNLA
HTTTEVAHHIIYINHRIITISRLDKVKTISKEEAESLFKRMLAFYGSLQG
LTNAYLERVASFLSGRMEAEKVTGSDGGNSNHRSSRRRQDPNHYSATHNN
INGVYASFLDH

BO17328.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Lsd-1-PD 405 CG10374-PD 1..405 1..405 2059 100 Plus
Lsd-1-PC 405 CG10374-PC 1..405 1..405 2059 100 Plus
Lsd-1-PA 431 CG10374-PA 1..431 1..405 2016 93.7 Plus
Lsd-1-PB 325 CG10374-PB 1..325 81..405 1660 100 Plus
Lsd-2-PB 335 CG9057-PB 36..251 11..218 205 25.4 Plus