Clone Sequence Records
BO17330.3prime Sequence
745 bp (663 high quality bases) assembled on 2006-10-13
> BO17330.3prime
ATGGTCTAGAAAGCTTGCCTCCAAGGCACCACGATGCTGCAGCCAAGGTA
AGACAACTTTCATATGCCTGCGGTATCTGGGATTGGTGTAGATGGAATTC
GTAAAGTTTGAATGCTCGTTCGAAATGATCTTATCGAAATCAGCATCATC
TGTGGGGTCCAGCAGAACGACTCCCATGACGGATATAGAGCAAATGAAGG
CCCATCCACTGTACTTGTTAAGAGCATTGCGAATGCTTCTTAAAGTTGGC
AGTTTCTTAGAGTAGTTCAGAAGTTTGAGGTGTTTCACCAACTCTGAGTG
GTAGAACCAGACGAAATAGTCGAATTTCTCCGTTTTAATGTCCAGGCTGG
TCGATGAAAGCAAGAAATAATACAAATCCTGCGCAACTGATCCCCACTTC
GGCAGTTGAAGATCCACAAAGTAGGTATTTGATATCTCGTTTTTGTCGTT
GTACTGGAACATAATGTTGTTAGACCAACCATCGCCATGGTTGAGGGCAT
TGAACTCGTCGGATTTTGGTTCCTTAATATCATTATATATATCGAATAAC
TTTTCTGAAACACTTTGCAAATCCTTTATGTAAGCTGCATGTCCATCGTA
CTGATCGATATTATTTAGCAAAATTTTAGCGCTGCGATCGCAGAAAAAGT
TTCATGATTTCTTTCGATTTGAAAAAACCATTGGTATACTTTTCTTCGTA
AGGGCCCTTGAGGTCCACGCGAACTGCAGAAGCCGCATGCCATTG
BO17330.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10560-PA | 1245 | CG10560-RA | 610..1242 | 651..19 | 3165 | 100 | Minus |
| CG10560-PA | 1245 | CG10560-RA | 517..611 | 745..651 | 475 | 100 | Minus |
| CG10553-PA | 1245 | CG10553-RA | 769..812 | 492..449 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10560-RA | 1367 | CG10560-RA | 562..1287 | 745..19 | 3610 | 99.9 | Minus |
| CG10553-RA | 1442 | CG10553-RA | 806..1108 | 492..190 | 405 | 77.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25318875..25319242 | 201..568 | 1840 | 100 | Plus |
| 3R | 32079331 | 3R | 25318630..25318812 | 19..201 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 25319305..25319481 | 568..745 | 840 | 99.4 | Plus |
| 3R | 32079331 | 3R | 25316866..25317156 | 202..492 | 375 | 75.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:23:19 has no hits.
BO17330.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:26 Download gff for
BO17330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-PA | 517..1245 | 15..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:45 Download gff for
BO17330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-RA | 562..1290 | 15..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:01 Download gff for
BO17330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-RA | 562..1290 | 15..745 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:01 Download gff for
BO17330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25318875..25319241 | 201..567 | 100 | <- | Plus |
| 3R | 25319305..25319481 | 568..745 | 99 | | Plus |
| 3R | 25318626..25318811 | 15..200 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:45 Download gff for
BO17330.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21144348..21144533 | 15..200 | 98 | <- | Plus |
| arm_3R | 21144597..21144963 | 201..567 | 100 | <- | Plus |
| arm_3R | 21145027..21145203 | 568..745 | 99 | | Plus |
BO17330.5prime Sequence
717 bp (714 high quality bases) assembled on 2006-10-13
> BO17330.5prime
GAAGTTATCAGTCGACATGCCACCCCAGACAAACGATGAAAATGTTTGCG
AGCGAGAGGTTCCAATTCCGGGCTGGGTGAAACCAGAAGTCTTTGAGGAC
CTGCTCAAGGATAATGTCAAGGATTATAAGAAGACCAAGGCCCTAAGGGC
CAAAGCAGGAGTCGCTGCTGGCGAAAACTATGCCACCATAATGCTGAGAC
TGGAACTAGATGTGGAAACGAAGGACAAATCGGAAGTAACCAAAGCATTC
ATGCTAAAAACTCCCCACGACACTGACGCATATCGCAAGCTTCTTCAAGA
AACGAATATCTTCGATGTGGAGCGCGGAATGTATTTGGTAGTGGTTCCCG
AGCTGGAGCAAATGTACCGGGATGTGGGCTTGGAGGTAAAGTTTGGGGCT
GAGGCCTACGAAATAAAGGTGAGCGAGAACTATGTTCTACTGGAGGATCT
CAGGCCTCGAGGATTCAAGAATGTAGACCGCCTGCAGGGCTTGGACCAAG
CTCACACCGAAAGTGTCCTGAGAAAGTTCGCCCAATGGCATGCGGCTTCT
GCAGTTCGCGTGGACCTCAAGGGCCCTTACGAAGAAAAGTATACCAATGG
TTTTTTCAAATCGAAAGAAATCATGAACTTTTTCTGCGATCGCAGCGCTA
ATATTTTGCTAAATAATATCGATCAGTACGATGGACATGCAGCTTACATA
AAGGATTTGCAAAGTGT
BO17330.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10560-PA | 1245 | CG10560-RA | 1..701 | 17..717 | 3480 | 99.8 | Plus |
| CG10553-PA | 1245 | CG10553-RA | 290..371 | 306..387 | 185 | 89 | Plus |
| CG10553-PA | 1245 | CG10553-RA | 139..179 | 155..195 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10560-RA | 1367 | CG10560-RA | 46..746 | 17..717 | 3490 | 99.9 | Plus |
| CG10553-RA | 1442 | CG10553-RA | 44..627 | 23..606 | 885 | 78 | Plus |
| CG10559-RB | 1435 | CG10559-RB | 319..523 | 341..545 | 245 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25319305..25319790 | 709..224 | 2415 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25319849..25320056 | 224..17 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 25317396..25317696 | 606..306 | 605 | 80.1 | Minus |
| 3R | 32079331 | 3R | 25317878..25318068 | 213..23 | 325 | 78 | Minus |
| 3R | 32079331 | 3R | 25315538..25315742 | 545..341 | 245 | 74.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:59:07 has no hits.
BO17330.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:27 Download gff for
BO17330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-PA | 1..701 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:24 Download gff for
BO17330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-RA | 46..746 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:00 Download gff for
BO17330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-RA | 46..746 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:00 Download gff for
BO17330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25319298..25319789 | 225..717 | 99 | <- | Minus |
| 3R | 25319849..25320056 | 17..224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:24 Download gff for
BO17330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21145020..21145511 | 225..717 | 99 | <- | Minus |
| arm_3R | 21145571..21145778 | 17..224 | 100 | | Minus |
BO17330.complete Sequence
1276 bp assembled on 2006-10-11
GenBank Submission: FJ634078
> BO17330.complete
GAAGTTATCAGTCGACATGCCACCCCAGACAAACGATGAAAATGTTTGCG
AGCGAGAGGTTCCAATTCCGGGCTGGGTGAAACCAGAAGTCTTTGAGGAC
CTGCTCAAGGATAATGTCAAGGATTATAAGAAGACCAAGGCCCTAAGGGC
CAAAGCAGGAGTCGCTGCTGGCGAAAACTATGCCACCATAATGCTGAGAC
TGGAACTAGATGTGGAAACGAAGGACAAATCGGAAGTAACCAAAGCATTC
ATGCTAAAAACTCCCCACGACACTGACGCATATCGCAAGCTTCTTCAAGA
AACGAATATCTTCGATGTGGAGCGCGGAATGTATTTGGTAGTGGTTCCCG
AGCTGGAGCAAATGTACCGGGATGTGGGCTTGGAGGTAAAGTTTGGGGCT
GAGGCCTACGAAATAAAGGTGAGCGAGAACTATGTTCTACTGGAGGATCT
CAGGCCTCGAGGATTCAAGAATGTAGACCGCCTGCAGGGCTTGGACCAAG
CTCACACCGAAAGTGTCCTGAGAAAGTTCGCCCAATGGCATGCGGCTTCT
GCAGTTCGCGTGGACCTCAAGGGCCCTTACGAAGAAAAGTATACCAATGG
TTTTTTCAAATCGAAAGAAATCATGAACTTTTTCTGCGATCGCAGCGCTA
AAATTTTGCTAAATAATATCGATCAGTACGATGGACATGCAGCTTACATA
AAGGATTTGCAAAGTGTTTCAGAAAAGTTATTCGATATATATAATGATAT
TAAGGAACCAAAATCCGACGAGTTCAATGCCCTCAACCATGGCGATGGTT
GGTCTAACAACATTATGTTCCAGTACAACGACAAAAACGAGATATCAAAT
ACCTACTTTGTGGATCTTCAACTGCCGAAGTGGGGATCAGTTGCGCAGGA
TTTGTATTATTTCTTGCTTTCATCGACCAGCCTGGACATTAAAACGGAGA
AATTCGACTATTTCGTCTGGTTCTACCACTCAGAGTTGGTGAAACACCTC
AAACTTCTGAACTACTCTAAGAAACTGCCAACTTTAAGAAGCATTCGCAA
TGCTCTTAACAAGTACAGTGGATGGGCCTTCATTTGCTCTATATCCGTCA
TGGGAGTCGTTCTGCTGGACCCCACAGATGATGCTGATTTCGATAAGATC
ATTTCGAACGAGCATTCAAACTTTACGAATTCCATCTACACCAATCCCAG
ATACCGCAGGCATATGAAAGTTGTCTTACCTTGGCTGCAGCATCGTGGTG
CCTTGGAGGCAAGCTTTCTAGACCAT
BO17330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10560-RA | 1245 | CG10560-PA | 1..1242 | 17..1258 | 6210 | 100 | Plus |
| CG10553-RA | 1245 | CG10553-PA | 7..590 | 23..606 | 835 | 76.2 | Plus |
| CG10553-RA | 1245 | CG10553-PA | 769..1071 | 785..1087 | 390 | 75.2 | Plus |
| CG10559-RB | 1248 | CG10559-PB | 307..511 | 341..545 | 245 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10560-RA | 1367 | CG10560-RA | 46..1287 | 17..1258 | 6210 | 100 | Plus |
| CG10553-RA | 1442 | CG10553-RA | 44..627 | 23..606 | 835 | 76.2 | Plus |
| CG10553-RA | 1442 | CG10553-RA | 806..1108 | 785..1087 | 390 | 75.2 | Plus |
| CG10559-RB | 1435 | CG10559-RB | 319..523 | 341..545 | 245 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25319305..25319790 | 709..224 | 2430 | 100 | Minus |
| 3R | 32079331 | 3R | 25318875..25319242 | 1076..709 | 1840 | 100 | Minus |
| 3R | 32079331 | 3R | 25319849..25320056 | 224..17 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 25318630..25318812 | 1258..1076 | 915 | 100 | Minus |
| 3R | 32079331 | 3R | 25317396..25317696 | 606..306 | 605 | 80.1 | Minus |
| 3R | 32079331 | 3R | 25316866..25317156 | 1075..785 | 375 | 75.3 | Minus |
| 3R | 32079331 | 3R | 25317878..25318068 | 213..23 | 325 | 78 | Minus |
| 3R | 32079331 | 3R | 25315538..25315742 | 545..341 | 245 | 74.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:54:01 has no hits.
BO17330.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:28 Download gff for
BO17330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-RA | 1..1245 | 17..1262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:39 Download gff for
BO17330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-RA | 24..1268 | 17..1262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:42 Download gff for
BO17330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-RA | 46..1287 | 17..1260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:29 Download gff for
BO17330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-RA | 24..1268 | 17..1262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:31 Download gff for
BO17330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10560-RA | 46..1287 | 17..1260 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:31 Download gff for
BO17330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25318875..25319241 | 710..1076 | 100 | <- | Minus |
| 3R | 25318628..25318811 | 1077..1260 | 98 | <- | Minus |
| 3R | 25319305..25319789 | 225..709 | 100 | <- | Minus |
| 3R | 25319849..25320056 | 17..224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:42 Download gff for
BO17330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21144350..21144533 | 1077..1260 | 98 | <- | Minus |
| arm_3R | 21144597..21144963 | 710..1076 | 100 | <- | Minus |
| arm_3R | 21145027..21145511 | 225..709 | 100 | <- | Minus |
| arm_3R | 21145571..21145778 | 17..224 | 100 | | Minus |
BO17330.pep Sequence
Translation from 16 to 1276
> BO17330.pep
MPPQTNDENVCEREVPIPGWVKPEVFEDLLKDNVKDYKKTKALRAKAGVA
AGENYATIMLRLELDVETKDKSEVTKAFMLKTPHDTDAYRKLLQETNIFD
VERGMYLVVVPELEQMYRDVGLEVKFGAEAYEIKVSENYVLLEDLRPRGF
KNVDRLQGLDQAHTESVLRKFAQWHAASAVRVDLKGPYEEKYTNGFFKSK
EIMNFFCDRSAKILLNNIDQYDGHAAYIKDLQSVSEKLFDIYNDIKEPKS
DEFNALNHGDGWSNNIMFQYNDKNEISNTYFVDLQLPKWGSVAQDLYYFL
LSSTSLDIKTEKFDYFVWFYHSELVKHLKLLNYSKKLPTLRSIRNALNKY
SGWAFICSISVMGVVLLDPTDDADFDKIISNEHSNFTNSIYTNPRYRRHM
KVVLPWLQHRGALEASFLDH
BO17330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10560-PA | 414 | CG10560-PA | 1..414 | 1..414 | 2185 | 100 | Plus |
| CG10553-PA | 414 | CG10553-PA | 1..414 | 1..414 | 1575 | 68.4 | Plus |
| CG10562-PA | 405 | CG10562-PA | 6..404 | 17..414 | 1027 | 49.9 | Plus |
| CHKov1-PE | 410 | CG10618-PE | 6..408 | 17..414 | 1018 | 48.4 | Plus |
| CG10559-PB | 415 | CG10559-PB | 9..414 | 16..414 | 926 | 44.8 | Plus |
