Clone Sequence Records
BO17331.3prime Sequence
659 bp (609 high quality bases) assembled on 2006-10-13
> BO17331.3prime
ATGGTCTAGAAAGCTTGCGAGTTTGTTCTGTACTTGGTTTTCCAGCGGAG
GTAGTTTTTCATAAATCCATTGCTGCAGATCCGTGATGGAGGCAGTTTTC
AGTTCGTGCAGTGTGTTCCTCAATGGATGAAATGTGCCCTTGACACCCAG
TTTCGTTAGGTTCTCGAAGGTTTCCAGACCCCAGTCCTTAGGTACCAGAG
TATCGCGTTCCCCGTGATACATTCGCAGCTCGGGAAAAGATTCGTCTTTG
CCGTTGGCCAGGGAATCATAGACAACGGAGCCGCGGTTCAGGAACGAGGA
ATGTGCGAATACGCCGGCCAAGCTGCGTCTCAAATGGTAGCCCGTGTGCA
GAGCCAAGGCTCCGCCCATCGAGAATCCGCCCACAACGATCCTGTTCAGC
GGTATGCCGCTGGCCACCTCCTCGTCGATCAGCTGATTGACCGCATCATA
ACACTGGGACATGCTCTTCTTGCTTTCCGATGCGGCAATGTTCACGGACT
TGCGGTCAAACCACACGTTGGATAGTTCCCCGTCCAGCGGGGTGTACTTC
TGTTTGGGAGCCGTGGGATATATTATCTTTATGTGCGGGTACTCCAGATT
CCGGCCGATAAGGAAGCGCACCCATTCCAGAACATTGGGGCCGGTGTCGC
CGGAATCGT
BO17331.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-PA | 708 | CG6567-RA | 70..705 | 654..19 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-RB | 1017 | CG6567-RB | 160..795 | 654..19 | 3180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10853657..10854292 | 19..654 | 3180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:13:47 has no hits.
BO17331.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:27 Download gff for
BO17331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-PA | 65..708 | 16..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:13 Download gff for
BO17331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 155..795 | 19..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:33 Download gff for
BO17331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 155..795 | 19..659 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:28:33 Download gff for
BO17331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10853657..10854297 | 19..659 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:13 Download gff for
BO17331.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6679379..6680019 | 19..659 | 99 | | Plus |
BO17331.5prime Sequence
737 bp (618 high quality bases) assembled on 2006-10-13
> BO17331.5prime
GAAGTTATCAGTCGACATGAAGCCAGCCTTGACAACGGTCAATGCCACTG
GCAAACACACAGCCTCCGTGATATTCTTCCACGGATCCGGCGACACCGGC
CCCAATGTTCTGGAATGGGTGCGCTTCCTTATCGGCCGGAATCTGGAGTA
CCCGCACATAAAGATAATATATCCCACGGCTCCCAAACAGAAGTACACCC
CGCTGGACGGGGAACTATCCAACGTGTGGTTTGACCGCAAGTCCGTGAAC
ATTGCCGCATCGGAAAGCAAGAAGAGCATGTCCCAGTGTTATGATGCGGT
CAATCAGCTGATCGACGAGGAGGTGGCCAGCGGCATACCGCTGAACAGGA
TCGTTGTGGGCGGATTCTCGATGGGCGGAGCCTTGGCTCTGCACACGGGC
TACCATTTGAGACGCAGCTTGGCCGGCGTATTCGCACATTCCTCGTTCCT
GAACCGCGGCTCCGTTGTCTATGATTCCCTGGCCAACGGCAAAGACGAAT
CTTTTCCCGAGCTGCGAATGTATCACGGGGAACGCGATACTCTGGTACCT
AAGGACTGGGGTCTGGAAACCTTCGAGAACCTAACGAAACTGGGTGTCAA
GGGCACATTTCATCCATTGAGGAACACACTGCACGAACTGAAAACTGCCT
CCATCACGGATCTGCAGCAATGGATTTATGAAAAACTACCTCCGCTGGAA
AAACCAGTACAGAACAAACTCGCAAGCTTTCTAGACC
BO17331.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-PA | 708 | CG6567-RA | 1..705 | 17..721 | 3475 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-RB | 1017 | CG6567-RB | 91..795 | 17..721 | 3495 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10853657..10854361 | 721..17 | 3495 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:54:36 has no hits.
BO17331.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:29 Download gff for
BO17331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-PA | 1..708 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:47 Download gff for
BO17331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 91..795 | 17..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:24 Download gff for
BO17331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 91..795 | 17..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:24 Download gff for
BO17331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10853657..10854361 | 17..721 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:47 Download gff for
BO17331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6679379..6680083 | 17..721 | 99 | | Minus |
BO17331.complete Sequence
739 bp assembled on 2006-10-11
GenBank Submission: FJ634079
> BO17331.complete
GAAGTTATCAGTCGACATGAAGCCAGCCTTGACAACGGTCAATGCCACTG
GCAAACACACAGCCTCCGTGATATTCTTCCACGGATCCGGCGACACCGGC
CCCAATGTTCTGGAATGGGTGCGCTTCCTTATCGGCCGGAATCTGGAGTA
CCCGCACATAAAGATAATATATCCCACGGCTCCCAAACAGAAGTACACCC
CGCTGGACGGGGAACTATCCAACGTGTGGTTTGACCGCAAGTCCGTGAAC
ATTGCCGCATCGGAAAGCAAGAAGAGCATGTCCCAGTGTTATGATGCGGT
CAATCAGCTGATCGACGAGGAGGTGGCCAGCGGCATACCGCTGAACAGGA
TCGTTGTGGGCGGATTCTCGATGGGCGGAGCCTTGGCTCTGCACACGGGC
TACCATTTGAGACGCAGCTTGGCCGGCGTATTCGCACATTCCTCGTTCCT
GAACCGCGGCTCCGTTGTCTATGATTCCCTGGCCAACGGCAAAGACGAAT
CTTTTCCCGAGCTGCGAATGTATCACGGGGAACGCGATACTCTGGTACCT
AAGGACTGGGGTCTGGAAACCTTCGAGAACCTAACGAAACTGGGTGTCAA
GGGCACATTTCATCCATTGAGGAACACACTGCACGAACTGAAAACTGCCT
CCATCACGGATCTGCAGCAATGGATTTATGAAAAACTACCTCCGCTGGAA
AACCAAGTACAGAACAAACTCGCAAGCTTTCTAGACCAT
BO17331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-RB | 708 | CG6567-PB | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-RB | 1017 | CG6567-RB | 91..795 | 17..721 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10853657..10854361 | 721..17 | 3525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:05:17 has no hits.
BO17331.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:13 Download gff for
BO17331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 1..708 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:27 Download gff for
BO17331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 62..766 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:27 Download gff for
BO17331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 91..795 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:13 Download gff for
BO17331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 62..766 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:39 Download gff for
BO17331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6567-RB | 91..795 | 17..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:39 Download gff for
BO17331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10853654..10854361 | 17..723 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:27 Download gff for
BO17331.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6679376..6680083 | 17..723 | 99 | | Minus |
BO17331.pep Sequence
Translation from 16 to 739
> BO17331.pep
MKPALTTVNATGKHTASVIFFHGSGDTGPNVLEWVRFLIGRNLEYPHIKI
IYPTAPKQKYTPLDGELSNVWFDRKSVNIAASESKKSMSQCYDAVNQLID
EEVASGIPLNRIVVGGFSMGGALALHTGYHLRRSLAGVFAHSSFLNRGSV
VYDSLANGKDESFPELRMYHGERDTLVPKDWGLETFENLTKLGVKGTFHP
LRNTLHELKTASITDLQQWIYEKLPPLENQVQNKLASFLDH
BO17331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6567-PB | 235 | CG6567-PB | 1..235 | 1..235 | 1238 | 100 | Plus |
| CG18815-PC | 216 | CG18815-PC | 7..211 | 8..220 | 267 | 34.3 | Plus |
| CG18815-PB | 216 | CG18815-PB | 7..211 | 8..220 | 267 | 34.3 | Plus |
| CG18815-PA | 216 | CG18815-PA | 7..211 | 8..220 | 267 | 34.3 | Plus |
| CG18815-PD | 221 | CG18815-PD | 7..211 | 8..220 | 267 | 34.3 | Plus |
