Clone Sequence Records
BO17337.5prime Sequence
625 bp (613 high quality bases) assembled on 2006-10-13
> BO17337.5prime
GAAGTTATCAGTCGACATGATGTCCAAGGTGGCTCATGGCATTGTTTCAA
ATATGCGGTCAATACTTCCGAGGCTCGAGGCTTCAGTAAAAGGCGGCCTC
GTGTCTGTTAGAAGTACCAGCAAGAGACCCGAGCTATCCGAGCACTTTAC
GCTGGATGAGATGGTGGCCAACGAGAAGCTGCTTCAGTATGACGAGGGCT
CAAAGGAACGCACGGAACTGGAAACCGCCCTGCTGGGCGTTCTCAATAGG
GTAGAGCACGTTCCCATCGTTATTAACGGCCAGGAGTTCCAGGCCAAGGA
GGACTTCCAACAGGTTCTGCCCTACGACATCCAACAGCCCATTGCCCATT
ACGGTCATGCCCACCGCGTGCTCATCCAAATGGCCATCGATAAGAGTGTG
GAGGCGCAGGTGAAGTGGGACAAGGTCAGGCTTAGTGATCGAATTGATAT
TTGGGAGCGGGCAGCGATGCTAATTGCCGGAAGATACCGCTACAACATCA
TTGCGGCCACGATGTTGGGCCAGGGAAAAACGCTGCGCCAGGCGGAGATG
GATGTAGCCGAGCTGGTGGACTTTATGCGCATTAATCCCGTCTTCCTGCG
TGAAGCTGGCCAACTACGAACCCAT
BO17337.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33092-PA | 1845 | CG33092-RA | 1..608 | 17..625 | 3005 | 99.8 | Plus |
CG33092-PB | 1845 | CG33092-RB | 1..608 | 17..625 | 3005 | 99.8 | Plus |
CG33092-PC | 1845 | CG33092-RC | 1..608 | 17..625 | 3005 | 99.8 | Plus |
CG33092-PF | 1845 | CG33092-RF | 1..608 | 17..625 | 3005 | 99.8 | Plus |
CG33092-PD | 1830 | CG33092-RD | 80..593 | 111..625 | 2535 | 99.8 | Plus |
CG33092-PE | 1830 | CG33092-RE | 80..593 | 111..625 | 2535 | 99.8 | Plus |
CG33092-PG | 1827 | CG33092-RG | 80..590 | 114..625 | 2520 | 99.8 | Plus |
CG33092-PD | 1830 | CG33092-RD | 1..80 | 17..96 | 400 | 100 | Plus |
CG33092-PE | 1830 | CG33092-RE | 1..80 | 17..96 | 400 | 100 | Plus |
CG33092-PG | 1827 | CG33092-RG | 1..80 | 17..96 | 400 | 100 | Plus |
CG34148-PA | 318 | CG34148-RA | 12..91 | 96..17 | 400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5CDh2-RC | 2306 | CG33092-RC | 397..1004 | 17..625 | 3020 | 99.8 | Plus |
P5CDh2-RB | 2312 | CG33092-RB | 403..1010 | 17..625 | 3020 | 99.8 | Plus |
P5CDh2-RA | 2472 | CG33092-RA | 563..1170 | 17..625 | 3020 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21878809..21879337 | 96..625 | 2600 | 99.8 | Plus |
3R | 32079331 | 3R | 21878498..21878577 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:22:24 has no hits.
BO17337.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:35 Download gff for
BO17337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33092-PA | 1..608 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:21:59 Download gff for
BO17337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5CDh2-RA | 463..1070 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:49 Download gff for
BO17337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5CDh2-RA | 563..1170 | 17..625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:49 Download gff for
BO17337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21878498..21878577 | 17..96 | 100 | -> | Plus |
3R | 21878810..21879337 | 97..625 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:21:59 Download gff for
BO17337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17704220..17704299 | 17..96 | 100 | -> | Plus |
arm_3R | 17704532..17705059 | 97..625 | 99 | | Plus |
BO17337.3prime Sequence
679 bp (589 high quality bases) assembled on 2006-10-13
> BO17337.3prime
ATGGTCTAGAAAGCTTGCCACCACCTTGTTGCCATCACTGTTGAAGTGCC
CAAAGGAGGATTCATCCTGGGAGACCATATCACTTTGTGCTATGCCCTGC
TCCTGATCATTTATTTGCATATATGGATAAAAGATATTCCTGTGTGTCTT
GTAGGACTCTTTAATCACCTGGGGCGATGTCCATCGCAGCAGGGAGTGGG
GAGTGCCCAACTTATCACTGGTGCCGGTCATGTGTCCCGCACCAAAAGGC
TGCTGACCCACCATCAATCCGGTGGACTTGTCATTCACATTTAAGTTGCC
CACATTGACTCTGAAGGCATCGTATGCTTCCTCGATGAAGTTCTGATCCT
GGGCAAACACCGAACCTGTCAATCCATGATTAATCTGGGCCACCTTTTCC
ATAGTCTCCTTGAGCTTATGGTCTGGATAGACATAGACACCGAGAATGGG
TGCCAGTAGCTCTTCCCGACATATGATATTGTCCAGATCCTTGACCAGTA
CCACCGTTGGATCTACGTAATAGCCACGTCGCTTGTCGCAGCTTCCTCCA
ACGAGGATCTGGCAACTGGGACTCTGGTCGATGTACCCTTAGCCACATGT
AGATGCGAATCGAGGCCCGTCGGTTGATCACCGCCGAGCAAAAAACTATC
GCAATACTTGGGATCTTGTCGCACGACCA
BO17337.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33092-PA | 1845 | CG33092-RA | 1184..1842 | 679..19 | 3100 | 99 | Minus |
CG33092-PB | 1845 | CG33092-RB | 1184..1842 | 679..19 | 3100 | 99 | Minus |
CG33092-PC | 1845 | CG33092-RC | 1184..1842 | 679..19 | 3100 | 99 | Minus |
CG33092-PD | 1830 | CG33092-RD | 1169..1827 | 679..19 | 3100 | 99 | Minus |
CG33092-PE | 1830 | CG33092-RE | 1169..1827 | 679..19 | 3100 | 99 | Minus |
CG33092-PF | 1845 | CG33092-RF | 1184..1842 | 679..19 | 3100 | 99 | Minus |
CG33092-PG | 1827 | CG33092-RG | 1166..1824 | 679..19 | 3100 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5CDh2-RG | 2354 | CG33092-RG | 1628..2286 | 679..19 | 3180 | 99.1 | Minus |
P5CDh2-RE | 2357 | CG33092-RE | 1631..2289 | 679..19 | 3180 | 99.1 | Minus |
P5CDh2-RD | 2291 | CG33092-RD | 1565..2223 | 679..19 | 3180 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21879970..21880628 | 679..19 | 3115 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:18:07 has no hits.
BO17337.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:34 Download gff for
BO17337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33092-PG | 1167..1827 | 18..678 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:16:17 Download gff for
BO17337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5CDh2-RD | 1566..2223 | 19..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:24:45 Download gff for
BO17337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5CDh2-RD | 1566..2223 | 19..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:24:45 Download gff for
BO17337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21879971..21880628 | 19..678 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:16:17 Download gff for
BO17337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17705693..17706350 | 19..678 | 99 | | Minus |
BO17337.complete Sequence
1876 bp assembled on 2006-12-18
GenBank Submission: FJ634080
> BO17337.complete
GAAGTTATCAGTCGACATGATGTCCAAGGTGGCTCATGGCATTGTTTCAA
ATATGCGGTCAATACTTCCGAGGCTCGAGGCTTCAGTAAAAGGCGGCCTC
GTGTCTGTTAGAAGTACCAGCAAGAGACCCGAGCTATCCGAGCACTTTAC
GCTGGATGAGATGGTGGCCAACGAGAAGCTGCTTCAGTATGACGAGGGCT
CAAAGGAACGCACGGAACTGGAAACCGCCCTGCTGGGCGTTCTCAATAGG
GTAGAGCACGTTCCCATCGTTATTAACGGCCAGGAGTTCCAGGCCAAGGA
GGACTTCCAACAGGTTCTGCCCTACGACATCCAACAGCCCATTGCCCATT
ACGGTCATGCCCACCGCGTGCTCATCCAAATGGCCATCGATAAGAGTGTG
GAGGCGCAGGTGAAGTGGGACAAGGTCAGGCTTAGTGATCGAATTGATAT
TTGGGAGCGGGCAGCGATGCTAATTGCCGGAAGATACCGCTACAACATCA
TTGCGGCCACGATGTTGGGCCAGGGAAAAACGCTGCGCCAGGCGGAGATG
GATGTAGCCGAGCTGGTGGACTTTATGCGCATTAATCCCGTCTTCCTGCG
TGAGCTGGCCAACTACGAACCCATTAGAGACATCCAAAACAATTGCAGGA
ACTCCATGCGGTTGAGAGGACTTTCGGGATTTGTGGCTGCCATCAGTCCG
TTTAACTTTACGGGTATCGCCGCCAATCTGGCCTATACGCCTGCCTTAAT
GGGCAACTCGGTGATCTGGAAGCCCTCTGACTCGGCCATCCTGTCCAACT
ATTTCGTTTTCAAGGCCCTGCGGGAGGCTGGAGTGCCCGATGGTGTGGTG
AACTTTGTGCCCGCCGAGGAGACAACGTTTGCATCCGTAGTGACGCAACA
TCCGAAATTGGCGGGGATTAACTTCACTGGTACCTCAACGGTGCTCAAGG
TGCTCTGGCAACTGGTGGCCCAGAATATAAATTTCTATCAGAACTATCCC
CGTTTGGTGGGCGAGGGAGGCGGCAAGAATTTCCACTTCGTACACTCCTC
GGCGGAACCGGAAACGGCGGTGGCCTGCACGATAAGAGCTGCCTTTGAGT
ACGCCGGCCAGAAGTGCTCCTCCTGTTCGATGTTGTACGTTCCGGAATCC
CTGTGGCAGAATCACATACGAGAACCTCTTCTTGAGATCACTGCATCTCT
GGTCGTGCGACAAGATGCCACGTATTGCGATAGTTTTTGCTCGGCGGTGA
TCAACCGACGGGCCTACGATCGCATCTACATGTGGCTAAGGTACATCGAC
CAGAGTCCCAGTTGCCAGATCCTCGTTGGAGGAAGCTGCGACAAGCGACG
TGGCTATTACGTAGATCCAACGGTGGTACTGGTCAAGGATCTGGACAATA
TCATATGTCGGGAAGAGCTACTGGCACCCATTCTCGGTGTCTATGTCTAT
CCAGACCATAAGCTCAAGGAGACTATGGAAAAGGTGGCCCAGATTAATCA
TGGATTGACAGGTTCGGTGTTTGCCCAGGATCAGAACTTCATCGAGGAAG
CATACGATGCCTTCAGAGTCAATGTGGGCAACTTAAATGTGAATGACAAG
TCCACCGGATTGATGGTGGGTCAGCAGCCTTTTGGTGCGGGACACATGAC
CGGCACCAGTGATAAGTTGGGCACTCCCCACTCCCTGCTGCGATGGACAT
CGCCCCAGGTGATTAAAGAGTCCTACAAGACACACAGGAATATCTTTTAT
CCATATATGCAAATAAATGATCAGGAGCAGGGCATAGCACAAAGTGATAT
GGTCTCCCAGGATGAATCCTCCTTTGGGCACTTCAACAGTGATGGCAACA
AGGTGGTGGCAAGCTTTCTAGACCAT
BO17337.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5CDh2-RC | 1845 | CG33092-PC | 1..1842 | 17..1858 | 9210 | 100 | Plus |
P5CDh2-RB | 1845 | CG33092-PB | 1..1842 | 17..1858 | 9210 | 100 | Plus |
P5CDh2-RA | 1845 | CG33092-PA | 1..1842 | 17..1858 | 9210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5CDh2-RC | 2306 | CG33092-RC | 397..2238 | 17..1858 | 9210 | 100 | Plus |
P5CDh2-RB | 2312 | CG33092-RB | 403..2244 | 17..1858 | 9210 | 100 | Plus |
P5CDh2-RA | 2472 | CG33092-RA | 563..2404 | 17..1858 | 9210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21879447..21880628 | 677..1858 | 5910 | 100 | Plus |
3R | 32079331 | 3R | 21878809..21879391 | 96..678 | 2915 | 100 | Plus |
3R | 32079331 | 3R | 21878498..21878577 | 17..96 | 400 | 100 | Plus |
3L | 28110227 | 3L | 21838564..21838664 | 867..767 | 220 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:04:54 has no hits.
BO17337.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:13 Download gff for
BO17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33092-RC | 1..1845 | 17..1859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:52 Download gff for
BO17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33092-RC | 397..2238 | 17..1858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:46 Download gff for
BO17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5CDh2-RA | 463..2304 | 17..1860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:15 Download gff for
BO17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33092-RC | 397..2238 | 17..1858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:59 Download gff for
BO17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5CDh2-RA | 563..2404 | 17..1860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:59 Download gff for
BO17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21878498..21878577 | 17..96 | 100 | -> | Plus |
3R | 21878810..21879390 | 97..677 | 100 | -> | Plus |
3R | 21879448..21880628 | 678..1860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:46 Download gff for
BO17337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17704220..17704299 | 17..96 | 100 | -> | Plus |
arm_3R | 17704532..17705112 | 97..677 | 100 | -> | Plus |
arm_3R | 17705170..17706350 | 678..1860 | 99 | | Plus |
BO17337.pep Sequence
Translation from 16 to 1876
> BO17337.pep
MMSKVAHGIVSNMRSILPRLEASVKGGLVSVRSTSKRPELSEHFTLDEMV
ANEKLLQYDEGSKERTELETALLGVLNRVEHVPIVINGQEFQAKEDFQQV
LPYDIQQPIAHYGHAHRVLIQMAIDKSVEAQVKWDKVRLSDRIDIWERAA
MLIAGRYRYNIIAATMLGQGKTLRQAEMDVAELVDFMRINPVFLRELANY
EPIRDIQNNCRNSMRLRGLSGFVAAISPFNFTGIAANLAYTPALMGNSVI
WKPSDSAILSNYFVFKALREAGVPDGVVNFVPAEETTFASVVTQHPKLAG
INFTGTSTVLKVLWQLVAQNINFYQNYPRLVGEGGGKNFHFVHSSAEPET
AVACTIRAAFEYAGQKCSSCSMLYVPESLWQNHIREPLLEITASLVVRQD
ATYCDSFCSAVINRRAYDRIYMWLRYIDQSPSCQILVGGSCDKRRGYYVD
PTVVLVKDLDNIICREELLAPILGVYVYPDHKLKETMEKVAQINHGLTGS
VFAQDQNFIEEAYDAFRVNVGNLNVNDKSTGLMVGQQPFGAGHMTGTSDK
LGTPHSLLRWTSPQVIKESYKTHRNIFYPYMQINDQEQGIAQSDMVSQDE
SSFGHFNSDGNKVVASFLDH
BO17337.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5CDh2-PC | 614 | CG33092-PC | 1..614 | 1..614 | 3189 | 100 | Plus |
P5CDh2-PB | 614 | CG33092-PB | 1..614 | 1..614 | 3189 | 100 | Plus |
P5CDh2-PA | 614 | CG33092-PA | 1..614 | 1..614 | 3189 | 100 | Plus |
P5CDh2-PE | 609 | CG33092-PE | 1..609 | 1..614 | 3152 | 99.2 | Plus |
P5CDh2-PD | 609 | CG33092-PD | 1..609 | 1..614 | 3152 | 99.2 | Plus |