Clone BO17337 Report

Search the DGRC for BO17337

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG33092-RA
Protein status:BO17337.pep: validated full length
Sequenced Size:1876

Clone Sequence Records

BO17337.5prime Sequence

625 bp (613 high quality bases) assembled on 2006-10-13

> BO17337.5prime
GAAGTTATCAGTCGACATGATGTCCAAGGTGGCTCATGGCATTGTTTCAA
ATATGCGGTCAATACTTCCGAGGCTCGAGGCTTCAGTAAAAGGCGGCCTC
GTGTCTGTTAGAAGTACCAGCAAGAGACCCGAGCTATCCGAGCACTTTAC
GCTGGATGAGATGGTGGCCAACGAGAAGCTGCTTCAGTATGACGAGGGCT
CAAAGGAACGCACGGAACTGGAAACCGCCCTGCTGGGCGTTCTCAATAGG
GTAGAGCACGTTCCCATCGTTATTAACGGCCAGGAGTTCCAGGCCAAGGA
GGACTTCCAACAGGTTCTGCCCTACGACATCCAACAGCCCATTGCCCATT
ACGGTCATGCCCACCGCGTGCTCATCCAAATGGCCATCGATAAGAGTGTG
GAGGCGCAGGTGAAGTGGGACAAGGTCAGGCTTAGTGATCGAATTGATAT
TTGGGAGCGGGCAGCGATGCTAATTGCCGGAAGATACCGCTACAACATCA
TTGCGGCCACGATGTTGGGCCAGGGAAAAACGCTGCGCCAGGCGGAGATG
GATGTAGCCGAGCTGGTGGACTTTATGCGCATTAATCCCGTCTTCCTGCG
TGAAGCTGGCCAACTACGAACCCAT

BO17337.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG33092-PA 1845 CG33092-RA 1..608 17..625 3005 99.8 Plus
CG33092-PB 1845 CG33092-RB 1..608 17..625 3005 99.8 Plus
CG33092-PC 1845 CG33092-RC 1..608 17..625 3005 99.8 Plus
CG33092-PF 1845 CG33092-RF 1..608 17..625 3005 99.8 Plus
CG33092-PD 1830 CG33092-RD 80..593 111..625 2535 99.8 Plus
CG33092-PE 1830 CG33092-RE 80..593 111..625 2535 99.8 Plus
CG33092-PG 1827 CG33092-RG 80..590 114..625 2520 99.8 Plus
CG33092-PD 1830 CG33092-RD 1..80 17..96 400 100 Plus
CG33092-PE 1830 CG33092-RE 1..80 17..96 400 100 Plus
CG33092-PG 1827 CG33092-RG 1..80 17..96 400 100 Plus
CG34148-PA 318 CG34148-RA 12..91 96..17 400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
P5CDh2-RC 2306 CG33092-RC 397..1004 17..625 3020 99.8 Plus
P5CDh2-RB 2312 CG33092-RB 403..1010 17..625 3020 99.8 Plus
P5CDh2-RA 2472 CG33092-RA 563..1170 17..625 3020 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21878809..21879337 96..625 2600 99.8 Plus
3R 32079331 3R 21878498..21878577 17..96 400 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:22:24 has no hits.

BO17337.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:35 Download gff for BO17337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33092-PA 1..608 17..625 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:21:59 Download gff for BO17337.5prime
Subject Subject Range Query Range Percent Splice Strand
P5CDh2-RA 463..1070 17..625 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:49 Download gff for BO17337.5prime
Subject Subject Range Query Range Percent Splice Strand
P5CDh2-RA 563..1170 17..625 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:49 Download gff for BO17337.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21878498..21878577 17..96 100 -> Plus
3R 21878810..21879337 97..625 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:21:59 Download gff for BO17337.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17704220..17704299 17..96 100 -> Plus
arm_3R 17704532..17705059 97..625 99   Plus

BO17337.3prime Sequence

679 bp (589 high quality bases) assembled on 2006-10-13

> BO17337.3prime
ATGGTCTAGAAAGCTTGCCACCACCTTGTTGCCATCACTGTTGAAGTGCC
CAAAGGAGGATTCATCCTGGGAGACCATATCACTTTGTGCTATGCCCTGC
TCCTGATCATTTATTTGCATATATGGATAAAAGATATTCCTGTGTGTCTT
GTAGGACTCTTTAATCACCTGGGGCGATGTCCATCGCAGCAGGGAGTGGG
GAGTGCCCAACTTATCACTGGTGCCGGTCATGTGTCCCGCACCAAAAGGC
TGCTGACCCACCATCAATCCGGTGGACTTGTCATTCACATTTAAGTTGCC
CACATTGACTCTGAAGGCATCGTATGCTTCCTCGATGAAGTTCTGATCCT
GGGCAAACACCGAACCTGTCAATCCATGATTAATCTGGGCCACCTTTTCC
ATAGTCTCCTTGAGCTTATGGTCTGGATAGACATAGACACCGAGAATGGG
TGCCAGTAGCTCTTCCCGACATATGATATTGTCCAGATCCTTGACCAGTA
CCACCGTTGGATCTACGTAATAGCCACGTCGCTTGTCGCAGCTTCCTCCA
ACGAGGATCTGGCAACTGGGACTCTGGTCGATGTACCCTTAGCCACATGT
AGATGCGAATCGAGGCCCGTCGGTTGATCACCGCCGAGCAAAAAACTATC
GCAATACTTGGGATCTTGTCGCACGACCA

BO17337.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG33092-PA 1845 CG33092-RA 1184..1842 679..19 3100 99 Minus
CG33092-PB 1845 CG33092-RB 1184..1842 679..19 3100 99 Minus
CG33092-PC 1845 CG33092-RC 1184..1842 679..19 3100 99 Minus
CG33092-PD 1830 CG33092-RD 1169..1827 679..19 3100 99 Minus
CG33092-PE 1830 CG33092-RE 1169..1827 679..19 3100 99 Minus
CG33092-PF 1845 CG33092-RF 1184..1842 679..19 3100 99 Minus
CG33092-PG 1827 CG33092-RG 1166..1824 679..19 3100 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
P5CDh2-RG 2354 CG33092-RG 1628..2286 679..19 3180 99.1 Minus
P5CDh2-RE 2357 CG33092-RE 1631..2289 679..19 3180 99.1 Minus
P5CDh2-RD 2291 CG33092-RD 1565..2223 679..19 3180 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21879970..21880628 679..19 3115 98.8 Minus
Blast to na_te.dros performed on 2015-02-13 06:18:07 has no hits.

BO17337.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:34 Download gff for BO17337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33092-PG 1167..1827 18..678 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:16:17 Download gff for BO17337.3prime
Subject Subject Range Query Range Percent Splice Strand
P5CDh2-RD 1566..2223 19..678 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:24:45 Download gff for BO17337.3prime
Subject Subject Range Query Range Percent Splice Strand
P5CDh2-RD 1566..2223 19..678 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:24:45 Download gff for BO17337.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21879971..21880628 19..678 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:16:17 Download gff for BO17337.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17705693..17706350 19..678 99   Minus

BO17337.complete Sequence

1876 bp assembled on 2006-12-18

GenBank Submission: FJ634080

> BO17337.complete
GAAGTTATCAGTCGACATGATGTCCAAGGTGGCTCATGGCATTGTTTCAA
ATATGCGGTCAATACTTCCGAGGCTCGAGGCTTCAGTAAAAGGCGGCCTC
GTGTCTGTTAGAAGTACCAGCAAGAGACCCGAGCTATCCGAGCACTTTAC
GCTGGATGAGATGGTGGCCAACGAGAAGCTGCTTCAGTATGACGAGGGCT
CAAAGGAACGCACGGAACTGGAAACCGCCCTGCTGGGCGTTCTCAATAGG
GTAGAGCACGTTCCCATCGTTATTAACGGCCAGGAGTTCCAGGCCAAGGA
GGACTTCCAACAGGTTCTGCCCTACGACATCCAACAGCCCATTGCCCATT
ACGGTCATGCCCACCGCGTGCTCATCCAAATGGCCATCGATAAGAGTGTG
GAGGCGCAGGTGAAGTGGGACAAGGTCAGGCTTAGTGATCGAATTGATAT
TTGGGAGCGGGCAGCGATGCTAATTGCCGGAAGATACCGCTACAACATCA
TTGCGGCCACGATGTTGGGCCAGGGAAAAACGCTGCGCCAGGCGGAGATG
GATGTAGCCGAGCTGGTGGACTTTATGCGCATTAATCCCGTCTTCCTGCG
TGAGCTGGCCAACTACGAACCCATTAGAGACATCCAAAACAATTGCAGGA
ACTCCATGCGGTTGAGAGGACTTTCGGGATTTGTGGCTGCCATCAGTCCG
TTTAACTTTACGGGTATCGCCGCCAATCTGGCCTATACGCCTGCCTTAAT
GGGCAACTCGGTGATCTGGAAGCCCTCTGACTCGGCCATCCTGTCCAACT
ATTTCGTTTTCAAGGCCCTGCGGGAGGCTGGAGTGCCCGATGGTGTGGTG
AACTTTGTGCCCGCCGAGGAGACAACGTTTGCATCCGTAGTGACGCAACA
TCCGAAATTGGCGGGGATTAACTTCACTGGTACCTCAACGGTGCTCAAGG
TGCTCTGGCAACTGGTGGCCCAGAATATAAATTTCTATCAGAACTATCCC
CGTTTGGTGGGCGAGGGAGGCGGCAAGAATTTCCACTTCGTACACTCCTC
GGCGGAACCGGAAACGGCGGTGGCCTGCACGATAAGAGCTGCCTTTGAGT
ACGCCGGCCAGAAGTGCTCCTCCTGTTCGATGTTGTACGTTCCGGAATCC
CTGTGGCAGAATCACATACGAGAACCTCTTCTTGAGATCACTGCATCTCT
GGTCGTGCGACAAGATGCCACGTATTGCGATAGTTTTTGCTCGGCGGTGA
TCAACCGACGGGCCTACGATCGCATCTACATGTGGCTAAGGTACATCGAC
CAGAGTCCCAGTTGCCAGATCCTCGTTGGAGGAAGCTGCGACAAGCGACG
TGGCTATTACGTAGATCCAACGGTGGTACTGGTCAAGGATCTGGACAATA
TCATATGTCGGGAAGAGCTACTGGCACCCATTCTCGGTGTCTATGTCTAT
CCAGACCATAAGCTCAAGGAGACTATGGAAAAGGTGGCCCAGATTAATCA
TGGATTGACAGGTTCGGTGTTTGCCCAGGATCAGAACTTCATCGAGGAAG
CATACGATGCCTTCAGAGTCAATGTGGGCAACTTAAATGTGAATGACAAG
TCCACCGGATTGATGGTGGGTCAGCAGCCTTTTGGTGCGGGACACATGAC
CGGCACCAGTGATAAGTTGGGCACTCCCCACTCCCTGCTGCGATGGACAT
CGCCCCAGGTGATTAAAGAGTCCTACAAGACACACAGGAATATCTTTTAT
CCATATATGCAAATAAATGATCAGGAGCAGGGCATAGCACAAAGTGATAT
GGTCTCCCAGGATGAATCCTCCTTTGGGCACTTCAACAGTGATGGCAACA
AGGTGGTGGCAAGCTTTCTAGACCAT

BO17337.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
P5CDh2-RC 1845 CG33092-PC 1..1842 17..1858 9210 100 Plus
P5CDh2-RB 1845 CG33092-PB 1..1842 17..1858 9210 100 Plus
P5CDh2-RA 1845 CG33092-PA 1..1842 17..1858 9210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
P5CDh2-RC 2306 CG33092-RC 397..2238 17..1858 9210 100 Plus
P5CDh2-RB 2312 CG33092-RB 403..2244 17..1858 9210 100 Plus
P5CDh2-RA 2472 CG33092-RA 563..2404 17..1858 9210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21879447..21880628 677..1858 5910 100 Plus
3R 32079331 3R 21878809..21879391 96..678 2915 100 Plus
3R 32079331 3R 21878498..21878577 17..96 400 100 Plus
3L 28110227 3L 21838564..21838664 867..767 220 81.2 Minus
Blast to na_te.dros performed on 2014-11-27 16:04:54 has no hits.

BO17337.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:13 Download gff for BO17337.complete
Subject Subject Range Query Range Percent Splice Strand
CG33092-RC 1..1845 17..1859 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:52 Download gff for BO17337.complete
Subject Subject Range Query Range Percent Splice Strand
CG33092-RC 397..2238 17..1858 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:46 Download gff for BO17337.complete
Subject Subject Range Query Range Percent Splice Strand
P5CDh2-RA 463..2304 17..1860 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:15 Download gff for BO17337.complete
Subject Subject Range Query Range Percent Splice Strand
CG33092-RC 397..2238 17..1858 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:59 Download gff for BO17337.complete
Subject Subject Range Query Range Percent Splice Strand
P5CDh2-RA 563..2404 17..1860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:59 Download gff for BO17337.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21878498..21878577 17..96 100 -> Plus
3R 21878810..21879390 97..677 100 -> Plus
3R 21879448..21880628 678..1860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:46 Download gff for BO17337.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17704220..17704299 17..96 100 -> Plus
arm_3R 17704532..17705112 97..677 100 -> Plus
arm_3R 17705170..17706350 678..1860 99   Plus

BO17337.pep Sequence

Translation from 16 to 1876

> BO17337.pep
MMSKVAHGIVSNMRSILPRLEASVKGGLVSVRSTSKRPELSEHFTLDEMV
ANEKLLQYDEGSKERTELETALLGVLNRVEHVPIVINGQEFQAKEDFQQV
LPYDIQQPIAHYGHAHRVLIQMAIDKSVEAQVKWDKVRLSDRIDIWERAA
MLIAGRYRYNIIAATMLGQGKTLRQAEMDVAELVDFMRINPVFLRELANY
EPIRDIQNNCRNSMRLRGLSGFVAAISPFNFTGIAANLAYTPALMGNSVI
WKPSDSAILSNYFVFKALREAGVPDGVVNFVPAEETTFASVVTQHPKLAG
INFTGTSTVLKVLWQLVAQNINFYQNYPRLVGEGGGKNFHFVHSSAEPET
AVACTIRAAFEYAGQKCSSCSMLYVPESLWQNHIREPLLEITASLVVRQD
ATYCDSFCSAVINRRAYDRIYMWLRYIDQSPSCQILVGGSCDKRRGYYVD
PTVVLVKDLDNIICREELLAPILGVYVYPDHKLKETMEKVAQINHGLTGS
VFAQDQNFIEEAYDAFRVNVGNLNVNDKSTGLMVGQQPFGAGHMTGTSDK
LGTPHSLLRWTSPQVIKESYKTHRNIFYPYMQINDQEQGIAQSDMVSQDE
SSFGHFNSDGNKVVASFLDH

BO17337.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
P5CDh2-PC 614 CG33092-PC 1..614 1..614 3189 100 Plus
P5CDh2-PB 614 CG33092-PB 1..614 1..614 3189 100 Plus
P5CDh2-PA 614 CG33092-PA 1..614 1..614 3189 100 Plus
P5CDh2-PE 609 CG33092-PE 1..609 1..614 3152 99.2 Plus
P5CDh2-PD 609 CG33092-PD 1..609 1..614 3152 99.2 Plus