Clone Sequence Records
BO17339.3prime Sequence
831 bp (829 high quality bases) assembled on 2006-10-13
> BO17339.3prime
ATGGTCTAGAAAGCTTGCGCTTATCCATTTCCACGGCTCAGTGTCGGGGC
TGGTTATTGGCGTGGGATACTCCGCCTTCATGTCGGCCAGCCTGTCCTGC
AGGTCGCGCACCTTGTCCGAATCATCCAGATTCGCGCGCAGTTCGCCCTC
GGCGAGCATTTCCGAGTTCTTGGTCTCAAGACGGGAAATTTCCTGTTTCA
GTTCAGCCACCGTTTGGCTTTGCTCGGTGAATTTGATTTTCACATTCATC
AGCTCATCCTTCATGCGAGATTCCAGATCCGAGTATCTGTGTTGCTGTTC
ACGCGCCTTGTTGGACATGTCCTTCTCCCGGGTCACGGCCATTTCGAGCT
CCTCCTTGAGCTTCTTGTGCTCCTCGTCCTGCCGCCTCAGCTGATTGGTG
GACACCTGGACCTGCGTCTCCAGCTCCATGACCTTAAGTCGCAGCTCCTT
GAGCTCGGTAAGCGTCTCCATCTCGCGTATGCGCGTGGTCATCAGCTCCT
CCTCGAGCTTCTGCGTGTGCTCGCTACTCTTGGAGCTGTCAAAGAAGTTG
GTCAACAGCTTTTTGGGCGTAGAGTCCACAGCGTTGGTGGTGCGTTCGCT
TTCGCTGCGCTGATTCTCGGCCAATTGACGCTGCCACTGGCTGCTCAGCT
CCTGCACCCTCTGCTTGAGATCCTTTAGCGAAAGTGAGGCCTCAGCCTCG
CGAAGTTTACTAGCAATCAGTTCATCCTGCAGATGAGCCACCGAATTGTC
TGGCGTCGTTTCCCGCAGCGTCTTCTTATCCTCCTCCAGCTCCTCGACCT
TGGCCTTGAGGTTCCTGATCTGATCCTCGCT
BO17339.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11727-PB | 2340 | CG11727-RB | 1525..2337 | 831..19 | 4065 | 100 | Minus |
| CG11727-PA | 2424 | CG11727-RA | 1525..2286 | 831..70 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Evi5-RB | 3177 | CG11727-RB | 2280..3092 | 831..19 | 4065 | 100 | Minus |
| Evi5-RC | 3159 | CG11727-RC | 2262..3074 | 831..19 | 4065 | 100 | Minus |
| Evi5-RE | 5423 | CG48-RE | 2262..3074 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11435729..11436273 | 287..831 | 2725 | 100 | Plus |
| X | 23542271 | X | 11435549..11435668 | 169..288 | 600 | 100 | Plus |
| X | 23542271 | X | 11435383..11435483 | 70..170 | 505 | 100 | Plus |
| X | 23542271 | X | 11434764..11434816 | 19..71 | 265 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 15:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord2 | 7650 | accord2 QBERT 7650bp | 2180..2246 | 584..518 | 110 | 62.7 | Minus |
BO17339.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:37 Download gff for
BO17339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11727-PB | 1525..2340 | 15..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:35:43 Download gff for
BO17339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Evi5-RE | 2262..3080 | 12..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:30:55 Download gff for
BO17339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Evi5-RE | 2262..3080 | 12..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:30:55 Download gff for
BO17339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11434758..11434814 | 12..69 | 94 | <- | Plus |
| X | 11435383..11435481 | 70..168 | 100 | <- | Plus |
| X | 11435549..11435666 | 169..286 | 100 | <- | Plus |
| X | 11435729..11436273 | 287..831 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:35:43 Download gff for
BO17339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11328791..11328847 | 12..69 | 94 | <- | Plus |
| arm_X | 11329416..11329514 | 70..168 | 100 | <- | Plus |
| arm_X | 11329582..11329699 | 169..286 | 100 | <- | Plus |
| arm_X | 11329762..11330306 | 287..831 | 100 | | Plus |
BO17339.5prime Sequence
920 bp (814 high quality bases) assembled on 2006-10-13
> BO17339.5prime
GAAGTTATCAGTCGACATGACCCTGACCACAACGACCACTGCCTCATCAG
CCGAGAGCCAAGCGAAAATGGACGTAAAGGGCGGCGCACTTCCCGGCGAA
GAGAACCTGCCCACATCCGAAATGGATCTGCTGGCCAAACTGGAGGCGGC
CAATAAGCTCATCGAGAGCGATGCCAAGTCCCTCAACTCTCTGCATTCCA
CGCACAGTCGCAAGAACTCGGATACGAGTCAAATCAGTCTTACGTCGAGT
GGAAATTCGGTGGCCGAAGAGGACATCTGGACGACGTGGGCCACCATCCT
CAATGACTGGGAGGGAGCACTGAAACGAAAGAATCCCTGCGTCAGTGAGC
TGGTGCGCCGTGGAATTCCACACCACTTCCGAGCGATCGTATGGCAGCAG
CTAAGTGGAGCGTCCGACGGCGACAAAAAACAGTATGCGGAGTACATCAA
GGCGACCAGTGCCTGCGAGAAGGTCATACGGCGTGACATTGCCCGCACCT
ATCCCGAGGTGGAGTTCTTCAAGGAGAAGGATGGACCCGGACAGGAGGCC
CTGTTCAATGTGATCAAGGCATATTCTCTGCACGATCGCGAGGTCGGCTA
CTGCCAGGGCTCGGGATTCATTGTGGGCCTGCTGCTGATGCAAATGCCCG
AGGAGGAGGCATTCGCTGTGCTCGTGCAGATCATGCAGCAGCATCGGATG
CGGCACATGTTTAAGCCCTCCATGTCGGAGTTGGGCTTGTGCATGTACCA
GCTGGAGAATCTGGTGCAGGAGCAAATACCCGACATGCACATTCACTTCC
AGCAGCAGGGCTTCCAGACGAACATGTACGCCTCCAGTTGGTTCCTCACC
CTATACACGACCACTCTGAATGTCAATCTAAGTTGTCGCATCATGGACGT
CTTCCTCAGCGAGGGCATGG
BO17339.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11727-PB | 2340 | CG11727-RB | 1..904 | 17..920 | 4495 | 99.8 | Plus |
| CG11727-PA | 2424 | CG11727-RA | 1..904 | 17..920 | 4495 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Evi5-RB | 3177 | CG11727-RB | 756..1659 | 17..920 | 4505 | 99.9 | Plus |
| Evi5-RA | 5936 | CG11727-RA | 756..1659 | 17..920 | 4505 | 99.9 | Plus |
| Evi5-RC | 3159 | CG11727-RC | 756..1659 | 17..920 | 4505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11437568..11438239 | 920..249 | 3345 | 99.9 | Minus |
| X | 23542271 | X | 11438661..11438894 | 250..17 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:21:48 has no hits.
BO17339.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:38 Download gff for
BO17339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11727-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:52:55 Download gff for
BO17339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Evi5-RC | 749..1659 | 8..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:56:10 Download gff for
BO17339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Evi5-RC | 749..1659 | 8..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:56:10 Download gff for
BO17339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11437568..11438239 | 249..920 | 99 | <- | Minus |
| X | 11438663..11438901 | 8..248 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:52:55 Download gff for
BO17339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11331601..11332272 | 249..920 | 99 | <- | Minus |
| arm_X | 11332696..11332934 | 8..248 | 98 | | Minus |
BO17339.complete Sequence
2371 bp assembled on 2006-12-18
GenBank Submission: FJ634081
> BO17339.complete
GAAGTTATCAGTCGACATGACCCTGACCACAACGACCACTGCCTCATCAG
CCGAGAGCCAAGCGAAAATGGACGTAAAGGGCGGCGCACTTCCCGGCGAA
GAGAACCTGCCCACATCCGAAATGGATCTGCTGGCCAAACTGGAGGCGGC
CAATAAGCTCATCGAGAGCGATGCCAAGTCCCTCAACTCTCTGCATTCCA
CGCACAGTCGCAAGAACTCGGATACGAGTCAAATCAGTCTTACGTCGAGT
GGAAATTCGGTGGCCGAAGAGGACATCTGGACGACGTGGGCCACCATCCT
CAATGACTGGGAGGGAGCACTGAAACGAAAGAATCCCTGCGTCAGTGAGC
TGGTGCGCCGTGGAATTCCACACCACTTCCGAGCGATCGTATGGCAGCAG
CTAAGTGGAGCGTCCGACGGCGACAAAAAACAGTATGCGGAGTACATCAA
GGCGACCAGTGCCTGCGAGAAGGTCATACGGCGTGACATTGCCCGCACCT
ATCCCGAGGTGGAGTTCTTCAAGGAGAAGGATGGACCCGGACAGGAGGCC
CTGTTCAATGTGATCAAGGCATATTCTCTGCACGATCGCGAGGTCGGCTA
CTGCCAGGGCTCGGGATTCATTGTGGGCCTGCTGCTGATGCAAATGCCCG
AGGAGGAGGCATTCGCTGTGCTCGTGCAGATCATGCAGCAGCATCGGATG
CGGCACATGTTTAAGCCCTCCATGTCGGAGTTGGGCTTGTGCATGTACCA
GCTGGAGAATCTGGTGCAGGAGCAAATACCCGACATGCACATTCACTTCC
AGCAGCAGGGCTTCCAGACGACCATGTACGCCTCCAGTTGGTTCCTCACC
CTATACACGACCACTCTGAATGTCAATCTAAGTTGTCGCATCATGGACGT
CTTCCTCAGCGAGGGCATGGAGTTCATCTTTAAGGTGGCCTTGGCCCTGC
TGCTCACCGGCAAGGATACGTTGCTCTGCCTGGACATGGAGGCCATGCTT
AAGTTCTTCCAAAAGGAGCTGCCCGGTCGCGTGGAGGCGGATGTCGAGGG
CTTCTTCAATCTAGCCTACTCCATAAAGCTGAATACTAAGCGTATGAAGA
AGATGGAAAAGGAGTACCAGGACCTCAAGAAGAAGGAGCAGGAGGAGATG
GCCGAGCTGCGGCGACTGAGACGCGAGAACTGCCTGCTGAAGCAGCGCAA
CGAGCTGCTGGAGGCCGAGAGTGCCGAACTGGCCGATCGCCTGGTCCGTG
GTCAGGTCTCCCGAGCTGAGGAGGAGGAAACTAGCTATGCCATTCAGACG
GAGCTAATGCAGCTGCGCCGATCATACTTGGAGGTCTCGCATCAGCTGGA
AAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTACGGCTGCAGGAGAATA
ACGTATCCATCGACAGCAATAACTCCCGGCAATCGTCCATTGACGAGCTC
TGCATGAAGGAGGAGGCGCTGAAGCAGCGCGACGAGATGGTCTCCTGTTT
GCTGGAGGAACTGGTGAAGGTGCGTCAGGGACTGGCCGAAAGCGAGGATC
AGATCAGGAACCTCAAGGCCAAGGTCGAGGAGCTGGAGGAGGATAAGAAG
ACGCTGCGGGAAACGACGCCAGACAATTCGGTGGCTCATCTGCAGGATGA
ACTGATTGCTAGTAAACTTCGCGAGGCTGAGGCCTCACTTTCGCTAAAGG
ATCTCAAGCAGAGGGTGCAGGAGCTGAGCAGCCAGTGGCAGCGTCAATTG
GCCGAGAATCAGCGCAGCGAAAGCGAACGCACCACCAACGCTGTGGACTC
TACGCCCAAAAAGCTGTTGACCAACTTCTTTGACAGCTCCAAGAGTAGCG
AGCACACGCAGAAGCTCGAGGAGGAGCTGATGACCACGCGCATACGCGAG
ATGGAGACGCTTACCGAGCTCAAGGAGCTGCGACTTAAGGTCATGGAGCT
GGAGACGCAGGTCCAGGTGTCCACCAATCAGCTGAGGCGGCAGGACGAGG
AGCACAAGAAGCTCAAGGAGGAGCTCGAAATGGCCGTGACCCGGGAGAAG
GACATGTCCAACAAGGCGCGTGAACAGCAACACAGATACTCGGATCTGGA
ATCTCGCATGAAGGATGAGCTGATGAATGTGAAAATCAAATTCACCGAGC
AAAGCCAAACGGTGGCTGAACTGAAACAGGAAATTTCCCGTCTTGAGACC
AAGAACTCGGAAATGCTCGCCGAGGGCGAACTGCGCGCGAATCTGGATGA
TTCGGACAAGGTGCGCGACCTGCAGGACAGGCTGGCCGACATGAAGGCGG
AGTATCCCACGCCAATAACCAGCCCCGACACTGAGCCGTGGAAATGGATA
AGCGCAAGCTTTCTAGACCAT
BO17339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Evi5-RB | 2340 | CG11727-PB | 1..2337 | 17..2353 | 11685 | 100 | Plus |
| Evi5-RA | 2424 | CG11727-PA | 1..2286 | 17..2302 | 11430 | 100 | Plus |
| Evi5-RC | 2322 | CG11727-PC | 1..2319 | 17..2353 | 11380 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Evi5-RB | 3177 | CG11727-RB | 756..3092 | 17..2353 | 11685 | 100 | Plus |
| Evi5-RA | 5936 | CG11727-RA | 756..3041 | 17..2302 | 11430 | 100 | Plus |
| Evi5-RC | 3159 | CG11727-RC | 756..3074 | 17..2353 | 11380 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11437194..11438239 | 1294..249 | 5185 | 99.7 | Minus |
| X | 23542271 | X | 11435729..11436396 | 2085..1418 | 3340 | 100 | Minus |
| X | 23542271 | X | 11438661..11438894 | 250..17 | 1170 | 100 | Minus |
| X | 23542271 | X | 11435549..11435668 | 2203..2084 | 600 | 100 | Minus |
| X | 23542271 | X | 11437023..11437139 | 1399..1283 | 585 | 100 | Minus |
| X | 23542271 | X | 11435383..11435483 | 2302..2202 | 505 | 100 | Minus |
| X | 23542271 | X | 11434764..11434816 | 2353..2301 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:55:50 has no hits.
BO17339.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:16 Download gff for
BO17339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11727-RB | 1..2340 | 17..2357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:54 Download gff for
BO17339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11727-RB | 713..3062 | 8..2360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:37 Download gff for
BO17339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Evi5-RB | 756..3092 | 17..2355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:16 Download gff for
BO17339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11727-RB | 713..3062 | 8..2360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:15 Download gff for
BO17339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Evi5-RB | 756..3092 | 17..2355 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:15 Download gff for
BO17339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11434762..11434814 | 2303..2355 | 96 | <- | Minus |
| X | 11435383..11435481 | 2204..2302 | 100 | <- | Minus |
| X | 11435549..11435666 | 2086..2203 | 100 | <- | Minus |
| X | 11435729..11436396 | 1418..2085 | 100 | <- | Minus |
| X | 11436775..11436792 | 1400..1417 | 100 | <- | Minus |
| X | 11437023..11437137 | 1285..1399 | 100 | <- | Minus |
| X | 11437204..11438239 | 249..1284 | 100 | <- | Minus |
| X | 11438663..11438894 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:37 Download gff for
BO17339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11328795..11328847 | 2303..2355 | 96 | <- | Minus |
| arm_X | 11329416..11329514 | 2204..2302 | 100 | <- | Minus |
| arm_X | 11329582..11329699 | 2086..2203 | 100 | <- | Minus |
| arm_X | 11329762..11330429 | 1418..2085 | 100 | <- | Minus |
| arm_X | 11330808..11330825 | 1400..1417 | 100 | <- | Minus |
| arm_X | 11331056..11331170 | 1285..1399 | 100 | <- | Minus |
| arm_X | 11331237..11332272 | 249..1284 | 100 | <- | Minus |
| arm_X | 11332696..11332927 | 17..248 | 100 | | Minus |
BO17339.pep Sequence
Translation from 16 to 2371
> BO17339.pep
MTLTTTTTASSAESQAKMDVKGGALPGEENLPTSEMDLLAKLEAANKLIE
SDAKSLNSLHSTHSRKNSDTSQISLTSSGNSVAEEDIWTTWATILNDWEG
ALKRKNPCVSELVRRGIPHHFRAIVWQQLSGASDGDKKQYAEYIKATSAC
EKVIRRDIARTYPEVEFFKEKDGPGQEALFNVIKAYSLHDREVGYCQGSG
FIVGLLLMQMPEEEAFAVLVQIMQQHRMRHMFKPSMSELGLCMYQLENLV
QEQIPDMHIHFQQQGFQTTMYASSWFLTLYTTTLNVNLSCRIMDVFLSEG
MEFIFKVALALLLTGKDTLLCLDMEAMLKFFQKELPGRVEADVEGFFNLA
YSIKLNTKRMKKMEKEYQDLKKKEQEEMAELRRLRRENCLLKQRNELLEA
ESAELADRLVRGQVSRAEEEETSYAIQTELMQLRRSYLEVSHQLENANEE
VRGLSLRLQENNVSIDSNNSRQSSIDELCMKEEALKQRDEMVSCLLEELV
KVRQGLAESEDQIRNLKAKVEELEEDKKTLRETTPDNSVAHLQDELIASK
LREAEASLSLKDLKQRVQELSSQWQRQLAENQRSESERTTNAVDSTPKKL
LTNFFDSSKSSEHTQKLEEELMTTRIREMETLTELKELRLKVMELETQVQ
VSTNQLRRQDEEHKKLKEELEMAVTREKDMSNKAREQQHRYSDLESRMKD
ELMNVKIKFTEQSQTVAELKQEISRLETKNSEMLAEGELRANLDDSDKVR
DLQDRLADMKAEYPTPITSPDTEPWKWISASFLDH
BO17339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Evi5-PB | 779 | CG11727-PB | 1..779 | 1..779 | 3923 | 100 | Plus |
| Evi5-PC | 773 | CG11727-PC | 1..773 | 1..779 | 3878 | 99.2 | Plus |
| Evi5-PE | 773 | CG11727-PE | 1..773 | 1..779 | 3878 | 99.2 | Plus |
| Evi5-PA | 807 | CG11727-PA | 1..762 | 1..762 | 3819 | 100 | Plus |
| Evi5-PD | 801 | CG11727-PD | 1..756 | 1..762 | 3774 | 99.2 | Plus |
