Clone Sequence Records
BO17344.5prime Sequence
645 bp (582 high quality bases) assembled on 2006-10-13
> BO17344.5prime
GAAGTTATCAGTCGACATGGGCCAGACTTCCAGTCACCGGCAGATGCACC
ACAGTAGCAATAACAACAACAAGGAGGAACCACCACAACCGGCTTCACAG
TTTGGAAATCGTCGAACCTCTACCCGCAAATCGACTTCGTCTTCGAAACA
TTACCCCACATTGGTGCAACCATTGCGTAAGGATGAGCTCTCTCTCCTGC
GAGATTCACTTCTGCGCAATGGAAGCATTATGCGCAAGAACCCGGAACGT
CGTCCGGTAACGATCAGTGAGCTGAAACCAGTTAATACCGGGCAGGGGAC
TTCGGGTAGTGTCCTGCCTATTACAGCAGAGGATGCTGCTGGTGGGAGCA
GTAGTAGCATCACCCAACTAATGGCCTTCCAACTGCCCGTGGATCGAAGT
GCCAAGACTGACGACCTGGCTGCCGAATCCTCGGCTTCAGCAGCAGCAGC
TGTGGCGCCCAAGGAGGGGCGCAATGAGTTTTATATTGTGGGAGATGGCT
ATCATCGGACGGATCACTGCTACTATCGCAGTCCCAATGGCGATTTTCAC
AAACTGCCATCCGACTCCTTTCACAAGATGTCGGAGGGCTGTTTCGTCCG
AATGGCCGATGGGGTCTTCCGTCGCCTGGAGGTACCCACCAAGGC
BO17344.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8201-PI | 2982 | par-1-RI | 1..629 | 17..645 | 3145 | 100 | Plus |
CG8201-PO | 2982 | par-1-RO | 1..629 | 17..645 | 3145 | 100 | Plus |
CG8201-PQ | 1074 | par-1-RQ | 1..629 | 17..645 | 3145 | 100 | Plus |
CG8201-PJ | 2982 | par-1-RJ | 1..629 | 17..645 | 3145 | 100 | Plus |
CG8201-PH | 2982 | par-1-RH | 1..629 | 17..645 | 3145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-1-RQ | 3321 | CG8201-RQ | 610..1239 | 16..645 | 3150 | 100 | Plus |
par-1-RH | 4868 | CG8201-RH | 474..1103 | 16..645 | 3150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19464641..19465270 | 16..645 | 3150 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 17:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2633..2678 | 48..91 | 117 | 76.1 | Plus |
BO17344.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:43 Download gff for
BO17344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8201-PH | 1..629 | 17..645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:01 Download gff for
BO17344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RH | 467..1103 | 9..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:55 Download gff for
BO17344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RH | 467..1103 | 9..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:55 Download gff for
BO17344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19464634..19465270 | 9..645 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:01 Download gff for
BO17344.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15352139..15352775 | 9..645 | 99 | | Plus |
BO17344.3prime Sequence
675 bp (642 high quality bases) assembled on 2006-10-13
> BO17344.3prime
ATGGTCTAGAAAGCTTGCATGTGGGGTAACAAAAATCCTCGAGTTGCGAG
CCTTGTCACTGGATGATGCCGACTCCTTGGCCTTGGGCCTTTCCGCCTTA
CTGGTGGCCACAATGGGCAAGCCGCCGTTTTCGATCATTGTCACCACAAT
CTTATTGTTCCGACTGCTTACGGTGCCACCACCACCACCGCTTGCGTAGG
ATGAGTTCGCCGCCGCAGCTGAGGCTGCATTTGTGGCCGCTAGATTCTTC
TGCCGCAGGGCGTTCGATAGCCGTTGCTTGCGTTCCGCTCGGGCCTCCTC
CTTTTCCCGCTGCAACTTGGCAATAGTGGCGGGCGTGTGGCTCTTGGAGC
GCTTTAGAAATCTCATCAGTTGGCTCTTAACATTGGTGGCGGCACTTCCA
TTTCCCTGGCTTGTGGCATCGCCTATTTCCTCTGCCCTGCTGGATCTTCG
GGATATTTGAGCCTTGGTGGGTACCTCCAGGCGACGGAAGACCCCATCGG
CCATTCGGACGAAACAGCCCTCCGACATCTTGTGAAAGGAGTCGGATGGC
AGTTTGTGAAAATCGCCATTGGGACTGCGATAGTAGCAGTGATCCGTCCG
ATGATAGCCATCTCCCACAATATAAAACTCATTGCGCCCCTCCTTGTGCG
CCACAGCTGCTGCTGCTGAAGCCGA
BO17344.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8201-PQ | 1074 | par-1-RQ | 415..1071 | 675..19 | 3260 | 99.8 | Minus |
CG8201-PI | 2982 | par-1-RI | 415..1053 | 675..37 | 3170 | 99.8 | Minus |
CG8201-PO | 2982 | par-1-RO | 415..1053 | 675..37 | 3170 | 99.8 | Minus |
CG8201-PJ | 2982 | par-1-RJ | 415..1053 | 675..37 | 3170 | 99.8 | Minus |
CG8201-PH | 2982 | par-1-RH | 415..1053 | 675..37 | 3170 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-1-RQ | 3321 | CG8201-RQ | 1025..1681 | 675..19 | 3270 | 99.8 | Minus |
par-1-RH | 4868 | CG8201-RH | 889..1527 | 675..37 | 3180 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19465056..19465694 | 675..37 | 3180 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:43:34 has no hits.
BO17344.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:41 Download gff for
BO17344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8201-PQ | 416..1074 | 16..674 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:47 Download gff for
BO17344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 1026..1687 | 11..674 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:15 Download gff for
BO17344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 1026..1687 | 11..674 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:15 Download gff for
BO17344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19465057..19465694 | 37..674 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:47 Download gff for
BO17344.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15352562..15353199 | 37..674 | 99 | -> | Minus |
BO17344.complete Sequence
1105 bp assembled on 2006-10-11
GenBank Submission: FJ634082
> BO17344.complete
GAAGTTATCAGTCGACATGGGCCAGACTTCCAGTCACCGGCAGATGCACC
ACAGTAGCAATAACAACAACAAGGAGGAACCACCACAACCGGCTTCACAG
TTTGGAAATCGTCGAACCTCTACCCGCAAATCGACTTCGTCTTCGAAACA
TTACCCCACATTGGTGCAACCATTGCGTAAGGATGAGCTCTCTCTCCTGC
GAGATTCACTTCTGCGCAATGGAAGCATTATGCGCAAGAACCCGGAACGT
CGTCCGGTAACGATCAGTGAGCTGAAACCAGTTAATACCGGGCAGGGGAC
TTCGGGTAGTGTCCTGCCTATTACAGCAGAGGATGCTGCTGGTGGGAGCA
GTAGTAGCATCACCCAACTAATGGCCTTCCAACTGCCCGTGGATCGAAGT
GCCAAGACTGACGACCTGGCTGCCGAATCCTCGGCTTCAGCAGCAGCAGC
TGTGGCGCCCAAGGAGGGGCGCAATGAGTTTTATATTGTGGGAGATGGCT
ATCATCGGACGGATCACTGCTACTATCGCAGTCCCAATGGCGATTTTCAC
AAACTGCCATCCGACTCCTTTCACAAGATGTCGGAGGGCTGTTTCGTCCG
AATGGCCGATGGGGTCTTCCGTCGCCTGGAGGTACCCACCAAGGCTCAAA
TATCCCGAAGATCCAGCAGGGCAGAGGAAATAGGCGATGCCACAAGCCAG
GGAAATGGAAGTGCCGCCACCAATGTTAAGAGCCAACTGATGAGATTTCT
AAAGCGCTCCAAGAGCCACACGCCCGCCACTATTGCCAAGTTGCAGCGGG
AAAAGGAGGAGGCCCGAGCGGAACGCAAGCAACGGCTATCGAACGCCCTG
CGGCAGAAGAATCTAGCGGCCACAAATGCAGCCTCAGCTGCGGCGGCGAA
CTCATCCTACGCAAGCGGTGGTGGTGGTGGCACCGTAAGCAGTCGGAACA
ATAAGATTGTGGTGACAATGATCGAAAACGGCGGCTTGCCCATTGTGGCC
ACCAGTAAGGCGGAAAGGCCCAAGGCCAAGGAGTCGGCATCATCCAGTGA
CAAGGCTCGCAACTCGAGGATTTTTGTTACCCCACATGCAAGCTTTCTAG
ACCAT
BO17344.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-1-RQ | 1074 | CG8201-PQ | 1..1071 | 17..1087 | 5355 | 100 | Plus |
par-1-RH | 2982 | CG8201-PH | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-1-RQ | 3321 | CG8201-RQ | 610..1681 | 16..1087 | 5360 | 100 | Plus |
par-1-RH | 4868 | CG8201-RH | 474..1527 | 16..1069 | 5270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19464641..19465694 | 16..1069 | 5270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:44:38 has no hits.
BO17344.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:30 Download gff for
BO17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 1..1074 | 17..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:41 Download gff for
BO17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 569..1653 | 9..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:40 Download gff for
BO17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 611..1681 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:30 Download gff for
BO17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 569..1653 | 9..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:50 Download gff for
BO17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
par-1-RQ | 611..1681 | 17..1089 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:50 Download gff for
BO17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19464642..19465694 | 17..1069 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:40 Download gff for
BO17344.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15352147..15353199 | 17..1069 | 100 | -> | Plus |
BO17344.pep Sequence
Translation from 16 to 1105
> BO17344.pep
MGQTSSHRQMHHSSNNNNKEEPPQPASQFGNRRTSTRKSTSSSKHYPTLV
QPLRKDELSLLRDSLLRNGSIMRKNPERRPVTISELKPVNTGQGTSGSVL
PITAEDAAGGSSSSITQLMAFQLPVDRSAKTDDLAAESSASAAAAVAPKE
GRNEFYIVGDGYHRTDHCYYRSPNGDFHKLPSDSFHKMSEGCFVRMADGV
FRRLEVPTKAQISRRSSRAEEIGDATSQGNGSAATNVKSQLMRFLKRSKS
HTPATIAKLQREKEEARAERKQRLSNALRQKNLAATNAASAAAANSSYAS
GGGGGTVSSRNNKIVVTMIENGGLPIVATSKAERPKAKESASSSDKARNS
RIFVTPHASFLDH
BO17344.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
par-1-PQ | 357 | CG8201-PQ | 1..357 | 1..357 | 1800 | 100 | Plus |
par-1-PH | 993 | CG8201-PH | 1..351 | 1..351 | 1766 | 100 | Plus |