Clone BO17344 Report

Search the DGRC for BO17344

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:44
Vector:pDNR-Dual
Associated Gene/Transcriptpar-1-RQ
Protein status:BO17344.pep: validated full length
Sequenced Size:1105

Clone Sequence Records

BO17344.5prime Sequence

645 bp (582 high quality bases) assembled on 2006-10-13

> BO17344.5prime
GAAGTTATCAGTCGACATGGGCCAGACTTCCAGTCACCGGCAGATGCACC
ACAGTAGCAATAACAACAACAAGGAGGAACCACCACAACCGGCTTCACAG
TTTGGAAATCGTCGAACCTCTACCCGCAAATCGACTTCGTCTTCGAAACA
TTACCCCACATTGGTGCAACCATTGCGTAAGGATGAGCTCTCTCTCCTGC
GAGATTCACTTCTGCGCAATGGAAGCATTATGCGCAAGAACCCGGAACGT
CGTCCGGTAACGATCAGTGAGCTGAAACCAGTTAATACCGGGCAGGGGAC
TTCGGGTAGTGTCCTGCCTATTACAGCAGAGGATGCTGCTGGTGGGAGCA
GTAGTAGCATCACCCAACTAATGGCCTTCCAACTGCCCGTGGATCGAAGT
GCCAAGACTGACGACCTGGCTGCCGAATCCTCGGCTTCAGCAGCAGCAGC
TGTGGCGCCCAAGGAGGGGCGCAATGAGTTTTATATTGTGGGAGATGGCT
ATCATCGGACGGATCACTGCTACTATCGCAGTCCCAATGGCGATTTTCAC
AAACTGCCATCCGACTCCTTTCACAAGATGTCGGAGGGCTGTTTCGTCCG
AATGGCCGATGGGGTCTTCCGTCGCCTGGAGGTACCCACCAAGGC

BO17344.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8201-PI 2982 par-1-RI 1..629 17..645 3145 100 Plus
CG8201-PO 2982 par-1-RO 1..629 17..645 3145 100 Plus
CG8201-PQ 1074 par-1-RQ 1..629 17..645 3145 100 Plus
CG8201-PJ 2982 par-1-RJ 1..629 17..645 3145 100 Plus
CG8201-PH 2982 par-1-RH 1..629 17..645 3145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-RQ 3321 CG8201-RQ 610..1239 16..645 3150 100 Plus
par-1-RH 4868 CG8201-RH 474..1103 16..645 3150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19464641..19465270 16..645 3150 100 Plus
Blast to na_te.dros performed 2015-02-10 17:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2633..2678 48..91 117 76.1 Plus

BO17344.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:43 Download gff for BO17344.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8201-PH 1..629 17..645 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:01 Download gff for BO17344.5prime
Subject Subject Range Query Range Percent Splice Strand
par-1-RH 467..1103 9..645 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:55 Download gff for BO17344.5prime
Subject Subject Range Query Range Percent Splice Strand
par-1-RH 467..1103 9..645 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:55 Download gff for BO17344.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19464634..19465270 9..645 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:01 Download gff for BO17344.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15352139..15352775 9..645 99   Plus

BO17344.3prime Sequence

675 bp (642 high quality bases) assembled on 2006-10-13

> BO17344.3prime
ATGGTCTAGAAAGCTTGCATGTGGGGTAACAAAAATCCTCGAGTTGCGAG
CCTTGTCACTGGATGATGCCGACTCCTTGGCCTTGGGCCTTTCCGCCTTA
CTGGTGGCCACAATGGGCAAGCCGCCGTTTTCGATCATTGTCACCACAAT
CTTATTGTTCCGACTGCTTACGGTGCCACCACCACCACCGCTTGCGTAGG
ATGAGTTCGCCGCCGCAGCTGAGGCTGCATTTGTGGCCGCTAGATTCTTC
TGCCGCAGGGCGTTCGATAGCCGTTGCTTGCGTTCCGCTCGGGCCTCCTC
CTTTTCCCGCTGCAACTTGGCAATAGTGGCGGGCGTGTGGCTCTTGGAGC
GCTTTAGAAATCTCATCAGTTGGCTCTTAACATTGGTGGCGGCACTTCCA
TTTCCCTGGCTTGTGGCATCGCCTATTTCCTCTGCCCTGCTGGATCTTCG
GGATATTTGAGCCTTGGTGGGTACCTCCAGGCGACGGAAGACCCCATCGG
CCATTCGGACGAAACAGCCCTCCGACATCTTGTGAAAGGAGTCGGATGGC
AGTTTGTGAAAATCGCCATTGGGACTGCGATAGTAGCAGTGATCCGTCCG
ATGATAGCCATCTCCCACAATATAAAACTCATTGCGCCCCTCCTTGTGCG
CCACAGCTGCTGCTGCTGAAGCCGA

BO17344.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8201-PQ 1074 par-1-RQ 415..1071 675..19 3260 99.8 Minus
CG8201-PI 2982 par-1-RI 415..1053 675..37 3170 99.8 Minus
CG8201-PO 2982 par-1-RO 415..1053 675..37 3170 99.8 Minus
CG8201-PJ 2982 par-1-RJ 415..1053 675..37 3170 99.8 Minus
CG8201-PH 2982 par-1-RH 415..1053 675..37 3170 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-RQ 3321 CG8201-RQ 1025..1681 675..19 3270 99.8 Minus
par-1-RH 4868 CG8201-RH 889..1527 675..37 3180 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19465056..19465694 675..37 3180 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 17:43:34 has no hits.

BO17344.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:41 Download gff for BO17344.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8201-PQ 416..1074 16..674 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:47 Download gff for BO17344.3prime
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 1026..1687 11..674 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:15 Download gff for BO17344.3prime
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 1026..1687 11..674 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:15 Download gff for BO17344.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19465057..19465694 37..674 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:47 Download gff for BO17344.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15352562..15353199 37..674 99 -> Minus

BO17344.complete Sequence

1105 bp assembled on 2006-10-11

GenBank Submission: FJ634082

> BO17344.complete
GAAGTTATCAGTCGACATGGGCCAGACTTCCAGTCACCGGCAGATGCACC
ACAGTAGCAATAACAACAACAAGGAGGAACCACCACAACCGGCTTCACAG
TTTGGAAATCGTCGAACCTCTACCCGCAAATCGACTTCGTCTTCGAAACA
TTACCCCACATTGGTGCAACCATTGCGTAAGGATGAGCTCTCTCTCCTGC
GAGATTCACTTCTGCGCAATGGAAGCATTATGCGCAAGAACCCGGAACGT
CGTCCGGTAACGATCAGTGAGCTGAAACCAGTTAATACCGGGCAGGGGAC
TTCGGGTAGTGTCCTGCCTATTACAGCAGAGGATGCTGCTGGTGGGAGCA
GTAGTAGCATCACCCAACTAATGGCCTTCCAACTGCCCGTGGATCGAAGT
GCCAAGACTGACGACCTGGCTGCCGAATCCTCGGCTTCAGCAGCAGCAGC
TGTGGCGCCCAAGGAGGGGCGCAATGAGTTTTATATTGTGGGAGATGGCT
ATCATCGGACGGATCACTGCTACTATCGCAGTCCCAATGGCGATTTTCAC
AAACTGCCATCCGACTCCTTTCACAAGATGTCGGAGGGCTGTTTCGTCCG
AATGGCCGATGGGGTCTTCCGTCGCCTGGAGGTACCCACCAAGGCTCAAA
TATCCCGAAGATCCAGCAGGGCAGAGGAAATAGGCGATGCCACAAGCCAG
GGAAATGGAAGTGCCGCCACCAATGTTAAGAGCCAACTGATGAGATTTCT
AAAGCGCTCCAAGAGCCACACGCCCGCCACTATTGCCAAGTTGCAGCGGG
AAAAGGAGGAGGCCCGAGCGGAACGCAAGCAACGGCTATCGAACGCCCTG
CGGCAGAAGAATCTAGCGGCCACAAATGCAGCCTCAGCTGCGGCGGCGAA
CTCATCCTACGCAAGCGGTGGTGGTGGTGGCACCGTAAGCAGTCGGAACA
ATAAGATTGTGGTGACAATGATCGAAAACGGCGGCTTGCCCATTGTGGCC
ACCAGTAAGGCGGAAAGGCCCAAGGCCAAGGAGTCGGCATCATCCAGTGA
CAAGGCTCGCAACTCGAGGATTTTTGTTACCCCACATGCAAGCTTTCTAG
ACCAT

BO17344.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-RQ 1074 CG8201-PQ 1..1071 17..1087 5355 100 Plus
par-1-RH 2982 CG8201-PH 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-RQ 3321 CG8201-RQ 610..1681 16..1087 5360 100 Plus
par-1-RH 4868 CG8201-RH 474..1527 16..1069 5270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19464641..19465694 16..1069 5270 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:44:38 has no hits.

BO17344.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:30 Download gff for BO17344.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 1..1074 17..1090 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:41 Download gff for BO17344.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 569..1653 9..1095 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:40 Download gff for BO17344.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 611..1681 17..1089 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:30 Download gff for BO17344.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 569..1653 9..1095 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:50 Download gff for BO17344.complete
Subject Subject Range Query Range Percent Splice Strand
par-1-RQ 611..1681 17..1089 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:50 Download gff for BO17344.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19464642..19465694 17..1069 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:40 Download gff for BO17344.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15352147..15353199 17..1069 100 -> Plus

BO17344.pep Sequence

Translation from 16 to 1105

> BO17344.pep
MGQTSSHRQMHHSSNNNNKEEPPQPASQFGNRRTSTRKSTSSSKHYPTLV
QPLRKDELSLLRDSLLRNGSIMRKNPERRPVTISELKPVNTGQGTSGSVL
PITAEDAAGGSSSSITQLMAFQLPVDRSAKTDDLAAESSASAAAAVAPKE
GRNEFYIVGDGYHRTDHCYYRSPNGDFHKLPSDSFHKMSEGCFVRMADGV
FRRLEVPTKAQISRRSSRAEEIGDATSQGNGSAATNVKSQLMRFLKRSKS
HTPATIAKLQREKEEARAERKQRLSNALRQKNLAATNAASAAAANSSYAS
GGGGGTVSSRNNKIVVTMIENGGLPIVATSKAERPKAKESASSSDKARNS
RIFVTPHASFLDH

BO17344.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
par-1-PQ 357 CG8201-PQ 1..357 1..357 1800 100 Plus
par-1-PH 993 CG8201-PH 1..351 1..351 1766 100 Plus