Clone BO17345 Report

Search the DGRC for BO17345

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG32333-RB
Protein status:BO17345.pep: validated full length
Sequenced Size:742

Clone Sequence Records

BO17345.3prime Sequence

740 bp (740 high quality bases) assembled on 2006-10-13

> BO17345.3prime
ATGGTCTAGAAAGCTTGCCTTGATATACGGCTGATGAAGGGCCACGAGGC
TGGCGTGGATGCCCACACTGATGGCCGCCAGATGGAAGTAGTCGAACAGC
ACAGGCAGATGGTAGTGAAGGCCACGTCCCGGATGAAAGTTCAGCTGCAG
GTTCCTGGTGGAGGCCAGTGTCAGGGCAGAGCTGGCGGGTCCGGAGAAGC
TGCCCATCCCACTGCCGCCTCCATTGCCGTTCAGGCTGCTCGACCCGTTC
TGCTCCCCGAACCAGAGCTCCAACTGCAGCGAAAACTCGGCTCGTTCGAT
GGACTCCTTCAGGTGACGACTGTCAACTAGCAGATGGCTCCTGAAGTGGA
TGATGTCGCGCAGCGGAACCTCCTCGTTGCGGTAGAGTATCTGGAAGATG
CGCGAGGCGCCGCTGCCGTTGATAACGGAGGCGGATGAGCAGCTGCCCCC
CGGCGGTGATTCGTGGAGGCGTGGCACTTCCCCCGGCGACAGCTCCCCCC
TCTCGCTATCGCTGCTGCCGTGGTCGGTGGCGTTGGCCCCGTTGGCATGT
CCGTTCTGTTTTCCGGGTCCACTGGCTTCCGGAATGCTCGTCTCCACCTG
CACAAGTAGGCGGGGTGAAACACGCAGGCCACAGCGCACCTGGTAGAGTC
CGCGCTGAAACAAATCCACATTGAAGAACTTGTGCAGCTCCACGACGAAT
TCAATGGTGGCCTGTAGGTCACCCATGTCGACTGATAACT

BO17345.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-PB 711 CG32333-RB 1..708 726..19 3540 100 Minus
CG32333-PA 4470 CG32333-RA 1..707 726..20 3535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-RC 6339 CG32333-RC 425..1133 727..19 3545 100 Minus
CG32333-RB 1109 CG32333-RB 309..1017 727..19 3545 100 Minus
CG32333-RA 4876 CG32333-RA 309..1016 727..20 3540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1284787..1285114 650..323 1625 99.7 Minus
3L 28110227 3L 1287930..1288239 328..19 1550 100 Minus
3L 28110227 3L 1283735..1283812 727..650 390 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:21:16 has no hits.

BO17345.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:43 Download gff for BO17345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32333-PB 1..711 16..726 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:06 Download gff for BO17345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 309..1017 19..727 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:59 Download gff for BO17345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 309..1017 19..727 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:59 Download gff for BO17345.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1283735..1283812 650..727 100 -> Minus
3L 1284788..1285110 327..649 100 -> Minus
3L 1287932..1288239 19..326 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:06 Download gff for BO17345.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1283735..1283812 650..727 100 -> Minus
arm_3L 1284788..1285110 327..649 100 -> Minus
arm_3L 1287932..1288239 19..326 100   Minus

BO17345.5prime Sequence

740 bp (740 high quality bases) assembled on 2006-10-13

> BO17345.5prime
GAAGTTATCAGTCGACATGGGTGACCTACAGGCCACCATTGAATTCGTCG
TGGAGCTGCACAAGTTCTTCAATGTGGATTTGTTTCAGCGCGGACTCTAC
CAGGTGCGCTGTGGCCTGCGTGTTTCACCCCGCCTACTTGTGCAGGTGGA
GACGAGCATTCCGGAAGCCAGTGGACCCGGAAAACAGAACGGACATGCCA
ACGGGGCCAACGCCACCGACCACGGCAGCAGCGATAGCGAGAGGGGGGAG
CTGTCGCCGGGGGAAGTGCCACGCCTCCACGAATCACCGCCGGGGGGCAG
CTGCTCATCCGCCTCCGTTATCAACGGCAGCGGCGCCTCGCGCATCTTCC
AGATACTCTACCGCAACGAGGAGGTTCCGCTGCGCGACATCATCCACTTC
AGGAGCCATCTGCTAGTTGACAGTCGTCACCTGAAGGAGTCCATCGAACG
AGCCGAGTTTTCGCTGCAGTTGGAGCTCTGGTTCGGGGAGCAGAACGGGT
CGAGCAGCCTGAACGGCAATGGAGGCGGCAGTGGGATGGGCAGCTTCTCC
GGACCCGCCAGCTCTGCCCTGACACTGGCCTCCACCAGGAACCTGCAGCT
GAACTTTCATCCGGGACGTGGCCTTCACTACCATCTGCCTGTGCTGTTCG
ACTACTTCCATCTGGCGGCCATCAGTGTGGGCATCCACGCCAGCCTCGTG
GCCCTTCATCAGCCGTATATCAAGGCAAGCTTTCTAGACC

BO17345.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-PB 711 CG32333-RB 1..708 17..724 3540 100 Plus
CG32333-PA 4470 CG32333-RA 1..707 17..723 3535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-RC 6339 CG32333-RC 425..1133 16..724 3545 100 Plus
CG32333-RB 1109 CG32333-RB 309..1017 16..724 3545 100 Plus
CG32333-RA 4876 CG32333-RA 309..1016 16..723 3540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1284787..1285114 93..420 1625 99.7 Plus
3L 28110227 3L 1287930..1288239 415..724 1550 100 Plus
3L 28110227 3L 1283735..1283812 16..93 390 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:48:57 has no hits.

BO17345.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:44 Download gff for BO17345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32333-PB 1..711 17..727 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:10 Download gff for BO17345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 309..1017 16..724 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:35 Download gff for BO17345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 309..1017 16..724 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:35 Download gff for BO17345.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1283735..1283812 16..93 100 -> Plus
3L 1284788..1285110 94..416 100 -> Plus
3L 1287932..1288239 417..724 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:10 Download gff for BO17345.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1283735..1283812 16..93 100 -> Plus
arm_3L 1284788..1285110 94..416 100 -> Plus
arm_3L 1287932..1288239 417..724 100   Plus

BO17345.complete Sequence

742 bp assembled on 2006-10-11

GenBank Submission: FJ634083

> BO17345.complete
GAAGTTATCAGTCGACATGGGTGACCTACAGGCCACCATTGAATTCGTCG
TGGAGCTGCACAAGTTCTTCAATGTGGATTTGTTTCAGCGCGGACTCTAC
CAGGTGCGCTGTGGCCTGCGTGTTTCACCCCGCCTACTTGTGCAGGTGGA
GACGAGCATTCCGGAAGCCAGTGGACCCGGAAAACAGAACGGACATGCCA
ACGGGGCCAACGCCACCGACCACGGCAGCAGCGATAGCGAGAGGGGGGAG
CTGTCGCCGGGGGAAGTGCCACGCCTCCACGAATCACCGCCGGGGGGCAG
CTGCTCATCCGCCTCCGTTATCAACGGCAGCGGCGCCTCGCGCATCTTCC
AGATACTCTACCGCAACGAGGAGGTTCCGCTGCGCGACATCATCCACTTC
AGGAGCCATCTGCTAGTTGACAGTCGTCACCTGAAGGAGTCCATCGAACG
AGCCGAGTTTTCGCTGCAGTTGGAGCTCTGGTTCGGGGAGCAGAACGGGT
CGAGCAGCCTGAACGGCAATGGAGGCGGCAGTGGGATGGGCAGCTTCTCC
GGACCCGCCAGCTCTGCCCTGACACTGGCCTCCACCAGGAACCTGCAGCT
GAACTTTCATCCGGGACGTGGCCTTCACTACCATCTGCCTGTGCTGTTCG
ACTACTTCCATCTGGCGGCCATCAGTGTGGGCATCCACGCCAGCCTCGTG
GCCCTTCATCAGCCGTATATCAAGGCAAGCTTTCTAGACCAT

BO17345.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-RC 4500 CG32333-PC 1..708 17..724 3540 100 Plus
CG32333-RB 711 CG32333-PB 1..708 17..724 3540 100 Plus
CG32333-RA 4470 CG32333-PA 1..707 17..723 3535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-RC 6339 CG32333-RC 425..1133 16..724 3545 100 Plus
CG32333-RB 1109 CG32333-RB 309..1017 16..724 3545 100 Plus
CG32333-RA 4876 CG32333-RA 309..1016 16..723 3540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1284787..1285114 93..420 1625 99.7 Plus
3L 28110227 3L 1287930..1288239 415..724 1550 100 Plus
3L 28110227 3L 1283735..1283812 16..93 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:24:52 has no hits.

BO17345.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:31 Download gff for BO17345.complete
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 1..711 17..727 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:42 Download gff for BO17345.complete
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 292..1000 16..724 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:24 Download gff for BO17345.complete
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 310..1017 17..726 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:31 Download gff for BO17345.complete
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 292..1000 16..724 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:00 Download gff for BO17345.complete
Subject Subject Range Query Range Percent Splice Strand
CG32333-RB 310..1017 17..726 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:00 Download gff for BO17345.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1284788..1285110 94..416 100 -> Plus
3L 1283736..1283812 17..93 100 -> Plus
3L 1287932..1288239 417..726 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:24 Download gff for BO17345.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1283736..1283812 17..93 100 -> Plus
arm_3L 1284788..1285110 94..416 100 -> Plus
arm_3L 1287932..1288239 417..726 99   Plus

BO17345.pep Sequence

Translation from 16 to 742

> BO17345.pep
MGDLQATIEFVVELHKFFNVDLFQRGLYQVRCGLRVSPRLLVQVETSIPE
ASGPGKQNGHANGANATDHGSSDSERGELSPGEVPRLHESPPGGSCSSAS
VINGSGASRIFQILYRNEEVPLRDIIHFRSHLLVDSRHLKESIERAEFSL
QLELWFGEQNGSSSLNGNGGGSGMGSFSGPASSALTLASTRNLQLNFHPG
RGLHYHLPVLFDYFHLAAISVGIHASLVALHQPYIKASFLDH

BO17345.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32333-PC 1499 CG32333-PC 1..242 1..242 1230 97.9 Plus
CG32333-PB 236 CG32333-PB 1..236 1..236 1226 100 Plus
CG32333-PA 1489 CG32333-PA 1..237 1..237 1225 99.6 Plus