Clone Sequence Records
BO17345.3prime Sequence
740 bp (740 high quality bases) assembled on 2006-10-13
> BO17345.3prime
ATGGTCTAGAAAGCTTGCCTTGATATACGGCTGATGAAGGGCCACGAGGC
TGGCGTGGATGCCCACACTGATGGCCGCCAGATGGAAGTAGTCGAACAGC
ACAGGCAGATGGTAGTGAAGGCCACGTCCCGGATGAAAGTTCAGCTGCAG
GTTCCTGGTGGAGGCCAGTGTCAGGGCAGAGCTGGCGGGTCCGGAGAAGC
TGCCCATCCCACTGCCGCCTCCATTGCCGTTCAGGCTGCTCGACCCGTTC
TGCTCCCCGAACCAGAGCTCCAACTGCAGCGAAAACTCGGCTCGTTCGAT
GGACTCCTTCAGGTGACGACTGTCAACTAGCAGATGGCTCCTGAAGTGGA
TGATGTCGCGCAGCGGAACCTCCTCGTTGCGGTAGAGTATCTGGAAGATG
CGCGAGGCGCCGCTGCCGTTGATAACGGAGGCGGATGAGCAGCTGCCCCC
CGGCGGTGATTCGTGGAGGCGTGGCACTTCCCCCGGCGACAGCTCCCCCC
TCTCGCTATCGCTGCTGCCGTGGTCGGTGGCGTTGGCCCCGTTGGCATGT
CCGTTCTGTTTTCCGGGTCCACTGGCTTCCGGAATGCTCGTCTCCACCTG
CACAAGTAGGCGGGGTGAAACACGCAGGCCACAGCGCACCTGGTAGAGTC
CGCGCTGAAACAAATCCACATTGAAGAACTTGTGCAGCTCCACGACGAAT
TCAATGGTGGCCTGTAGGTCACCCATGTCGACTGATAACT
BO17345.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-PB | 711 | CG32333-RB | 1..708 | 726..19 | 3540 | 100 | Minus |
CG32333-PA | 4470 | CG32333-RA | 1..707 | 726..20 | 3535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-RC | 6339 | CG32333-RC | 425..1133 | 727..19 | 3545 | 100 | Minus |
CG32333-RB | 1109 | CG32333-RB | 309..1017 | 727..19 | 3545 | 100 | Minus |
CG32333-RA | 4876 | CG32333-RA | 309..1016 | 727..20 | 3540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1284787..1285114 | 650..323 | 1625 | 99.7 | Minus |
3L | 28110227 | 3L | 1287930..1288239 | 328..19 | 1550 | 100 | Minus |
3L | 28110227 | 3L | 1283735..1283812 | 727..650 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:21:16 has no hits.
BO17345.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:43 Download gff for
BO17345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-PB | 1..711 | 16..726 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:06 Download gff for
BO17345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 309..1017 | 19..727 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:59 Download gff for
BO17345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 309..1017 | 19..727 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:59 Download gff for
BO17345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1283735..1283812 | 650..727 | 100 | -> | Minus |
3L | 1284788..1285110 | 327..649 | 100 | -> | Minus |
3L | 1287932..1288239 | 19..326 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:06 Download gff for
BO17345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1283735..1283812 | 650..727 | 100 | -> | Minus |
arm_3L | 1284788..1285110 | 327..649 | 100 | -> | Minus |
arm_3L | 1287932..1288239 | 19..326 | 100 | | Minus |
BO17345.5prime Sequence
740 bp (740 high quality bases) assembled on 2006-10-13
> BO17345.5prime
GAAGTTATCAGTCGACATGGGTGACCTACAGGCCACCATTGAATTCGTCG
TGGAGCTGCACAAGTTCTTCAATGTGGATTTGTTTCAGCGCGGACTCTAC
CAGGTGCGCTGTGGCCTGCGTGTTTCACCCCGCCTACTTGTGCAGGTGGA
GACGAGCATTCCGGAAGCCAGTGGACCCGGAAAACAGAACGGACATGCCA
ACGGGGCCAACGCCACCGACCACGGCAGCAGCGATAGCGAGAGGGGGGAG
CTGTCGCCGGGGGAAGTGCCACGCCTCCACGAATCACCGCCGGGGGGCAG
CTGCTCATCCGCCTCCGTTATCAACGGCAGCGGCGCCTCGCGCATCTTCC
AGATACTCTACCGCAACGAGGAGGTTCCGCTGCGCGACATCATCCACTTC
AGGAGCCATCTGCTAGTTGACAGTCGTCACCTGAAGGAGTCCATCGAACG
AGCCGAGTTTTCGCTGCAGTTGGAGCTCTGGTTCGGGGAGCAGAACGGGT
CGAGCAGCCTGAACGGCAATGGAGGCGGCAGTGGGATGGGCAGCTTCTCC
GGACCCGCCAGCTCTGCCCTGACACTGGCCTCCACCAGGAACCTGCAGCT
GAACTTTCATCCGGGACGTGGCCTTCACTACCATCTGCCTGTGCTGTTCG
ACTACTTCCATCTGGCGGCCATCAGTGTGGGCATCCACGCCAGCCTCGTG
GCCCTTCATCAGCCGTATATCAAGGCAAGCTTTCTAGACC
BO17345.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-PB | 711 | CG32333-RB | 1..708 | 17..724 | 3540 | 100 | Plus |
CG32333-PA | 4470 | CG32333-RA | 1..707 | 17..723 | 3535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-RC | 6339 | CG32333-RC | 425..1133 | 16..724 | 3545 | 100 | Plus |
CG32333-RB | 1109 | CG32333-RB | 309..1017 | 16..724 | 3545 | 100 | Plus |
CG32333-RA | 4876 | CG32333-RA | 309..1016 | 16..723 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1284787..1285114 | 93..420 | 1625 | 99.7 | Plus |
3L | 28110227 | 3L | 1287930..1288239 | 415..724 | 1550 | 100 | Plus |
3L | 28110227 | 3L | 1283735..1283812 | 16..93 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:48:57 has no hits.
BO17345.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:44 Download gff for
BO17345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-PB | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:10 Download gff for
BO17345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 309..1017 | 16..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:35 Download gff for
BO17345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 309..1017 | 16..724 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:35 Download gff for
BO17345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1283735..1283812 | 16..93 | 100 | -> | Plus |
3L | 1284788..1285110 | 94..416 | 100 | -> | Plus |
3L | 1287932..1288239 | 417..724 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:10 Download gff for
BO17345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1283735..1283812 | 16..93 | 100 | -> | Plus |
arm_3L | 1284788..1285110 | 94..416 | 100 | -> | Plus |
arm_3L | 1287932..1288239 | 417..724 | 100 | | Plus |
BO17345.complete Sequence
742 bp assembled on 2006-10-11
GenBank Submission: FJ634083
> BO17345.complete
GAAGTTATCAGTCGACATGGGTGACCTACAGGCCACCATTGAATTCGTCG
TGGAGCTGCACAAGTTCTTCAATGTGGATTTGTTTCAGCGCGGACTCTAC
CAGGTGCGCTGTGGCCTGCGTGTTTCACCCCGCCTACTTGTGCAGGTGGA
GACGAGCATTCCGGAAGCCAGTGGACCCGGAAAACAGAACGGACATGCCA
ACGGGGCCAACGCCACCGACCACGGCAGCAGCGATAGCGAGAGGGGGGAG
CTGTCGCCGGGGGAAGTGCCACGCCTCCACGAATCACCGCCGGGGGGCAG
CTGCTCATCCGCCTCCGTTATCAACGGCAGCGGCGCCTCGCGCATCTTCC
AGATACTCTACCGCAACGAGGAGGTTCCGCTGCGCGACATCATCCACTTC
AGGAGCCATCTGCTAGTTGACAGTCGTCACCTGAAGGAGTCCATCGAACG
AGCCGAGTTTTCGCTGCAGTTGGAGCTCTGGTTCGGGGAGCAGAACGGGT
CGAGCAGCCTGAACGGCAATGGAGGCGGCAGTGGGATGGGCAGCTTCTCC
GGACCCGCCAGCTCTGCCCTGACACTGGCCTCCACCAGGAACCTGCAGCT
GAACTTTCATCCGGGACGTGGCCTTCACTACCATCTGCCTGTGCTGTTCG
ACTACTTCCATCTGGCGGCCATCAGTGTGGGCATCCACGCCAGCCTCGTG
GCCCTTCATCAGCCGTATATCAAGGCAAGCTTTCTAGACCAT
BO17345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-RC | 4500 | CG32333-PC | 1..708 | 17..724 | 3540 | 100 | Plus |
CG32333-RB | 711 | CG32333-PB | 1..708 | 17..724 | 3540 | 100 | Plus |
CG32333-RA | 4470 | CG32333-PA | 1..707 | 17..723 | 3535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-RC | 6339 | CG32333-RC | 425..1133 | 16..724 | 3545 | 100 | Plus |
CG32333-RB | 1109 | CG32333-RB | 309..1017 | 16..724 | 3545 | 100 | Plus |
CG32333-RA | 4876 | CG32333-RA | 309..1016 | 16..723 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1284787..1285114 | 93..420 | 1625 | 99.7 | Plus |
3L | 28110227 | 3L | 1287930..1288239 | 415..724 | 1550 | 100 | Plus |
3L | 28110227 | 3L | 1283735..1283812 | 16..93 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:24:52 has no hits.
BO17345.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:31 Download gff for
BO17345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:42 Download gff for
BO17345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 292..1000 | 16..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:24 Download gff for
BO17345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 310..1017 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:31 Download gff for
BO17345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 292..1000 | 16..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:00 Download gff for
BO17345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32333-RB | 310..1017 | 17..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:00 Download gff for
BO17345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1284788..1285110 | 94..416 | 100 | -> | Plus |
3L | 1283736..1283812 | 17..93 | 100 | -> | Plus |
3L | 1287932..1288239 | 417..726 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:24 Download gff for
BO17345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1283736..1283812 | 17..93 | 100 | -> | Plus |
arm_3L | 1284788..1285110 | 94..416 | 100 | -> | Plus |
arm_3L | 1287932..1288239 | 417..726 | 99 | | Plus |
BO17345.pep Sequence
Translation from 16 to 742
> BO17345.pep
MGDLQATIEFVVELHKFFNVDLFQRGLYQVRCGLRVSPRLLVQVETSIPE
ASGPGKQNGHANGANATDHGSSDSERGELSPGEVPRLHESPPGGSCSSAS
VINGSGASRIFQILYRNEEVPLRDIIHFRSHLLVDSRHLKESIERAEFSL
QLELWFGEQNGSSSLNGNGGGSGMGSFSGPASSALTLASTRNLQLNFHPG
RGLHYHLPVLFDYFHLAAISVGIHASLVALHQPYIKASFLDH
BO17345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32333-PC | 1499 | CG32333-PC | 1..242 | 1..242 | 1230 | 97.9 | Plus |
CG32333-PB | 236 | CG32333-PB | 1..236 | 1..236 | 1226 | 100 | Plus |
CG32333-PA | 1489 | CG32333-PA | 1..237 | 1..237 | 1225 | 99.6 | Plus |