Clone Sequence Records
BO17349.3prime Sequence
582 bp (581 high quality bases) assembled on 2006-10-13
> BO17349.3prime
ATGGTCTAGAAAGCTTGCGTAGTCGTCGTCGTCATCGTCATCGTCATCCT
CACTTGGCTTGCTGGCAACGGAGCCGTCTGCCAGCGGTGGTCGCTGCACC
ATTGCTGCCGCTTGCATGCTCATCCACTGCTGCTGCTCCTCGCGCGCCTG
CTCCTCGCGTGCCTTGGCGAACAGCTCCTGCTGCTGGCGCAGCAGCTCCT
CCTCCGGAATGCCCAGGTTCTCTAGGCGCGTGCTCTGGCGCCTTCGCTTG
GCTGCCACCTCCTTGCAGTCGTGCAGAACGGCCTCCGCCTCTTGTTTGTA
GTCGTGAAAACCCAAGCGTTCCAACGCCTCCAGGACGTGCTCTGCGTTTA
TCGTCTTCTTGTTGCGCATGTTGCACACCTCGTTGGCCTCCGAACTGATC
AGATGAATGAACTCTGAGCAGCAGTTGAGTATCAGCTCGCGACTCTCGTT
GGCCACCCGCACCGTGGGCACCAGCTCCTTGATGATCTTGTTGATGCTGG
CCCGTGGCAGGGTCAGCTCGTCGTCCTCGGCGCTGGGCGGCAGTAGTTCT
TCCTGCGGATTCGACATGTCGACTGATAACTT
BO17349.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4185-PA | 552 | NC2beta-RA | 1..549 | 567..19 | 2745 | 100 | Minus |
| CG8958-PA | 1866 | CG8958-RA | 1201..1227 | 48..22 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2beta-RA | 726 | CG4185-RA | 105..654 | 568..19 | 2750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15007917..15008466 | 568..19 | 2750 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 06:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 375..604 | 245..18 | 154 | 56.8 | Minus |
BO17349.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:46 Download gff for
BO17349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4185-PA | 1..552 | 18..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:16:24 Download gff for
BO17349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2beta-RA | 102..654 | 19..571 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:02 Download gff for
BO17349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2beta-RA | 102..654 | 19..571 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:02 Download gff for
BO17349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15007914..15008466 | 19..571 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:16:24 Download gff for
BO17349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15007914..15008466 | 19..571 | 99 | | Minus |
BO17349.5prime Sequence
581 bp (581 high quality bases) assembled on 2006-10-13
> BO17349.5prime
GAAGTTATCAGTCGACATGTCGAATCCGCAGGAAGAACTACTGCCGCCCA
GCGCCGAGGACGACGAGCTGACCCTGCCACGGGCCAGCATCAACAAGATC
ATCAAGGAGCTGGTGCCCACGGTGCGGGTGGCCAACGAGAGTCGCGAGCT
GATACTCAACTGCTGCTCAGAGTTCATTCATCTGATCAGTTCGGAGGCCA
ACGAGGTGTGCAACATGCGCAACAAGAAGACGATAAACGCAGAGCACGTC
CTGGAGGCGTTGGAACGCTTGGGTTTTCACGACTACAAACAAGAGGCGGA
GGCCGTTCTGCACGACTGCAAGGAGGTGGCAGCCAAGCGAAGGCGCCAGA
GCACGCGCCTAGAGAACCTGGGCATTCCGGAGGAGGAGCTGCTGCGCCAG
CAGCAGGAGCTGTTCGCCAAGGCACGCGAGGAGCAGGCGCGCGAGGAGCA
GCAGCAGTGGATGAGCATGCAAGCGGCAGCAATGGTGCAGCGACCACCGC
TGGCAGACGGCTCCGTTGCCAGCAAGCCAAGTGAGGATGACGATGACGAT
GACGACGACGACTACGCAAGCTTTCTAGACC
BO17349.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4185-PA | 552 | NC2beta-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
| CG8958-PA | 1866 | CG8958-RA | 1201..1227 | 536..562 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2beta-RA | 726 | CG4185-RA | 105..654 | 16..565 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15007917..15008466 | 16..565 | 2750 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 03:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 375..604 | 339..566 | 154 | 56.8 | Plus |
BO17349.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:46 Download gff for
BO17349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4185-PA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:01:42 Download gff for
BO17349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2beta-RA | 102..654 | 13..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:56:26 Download gff for
BO17349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2beta-RA | 102..654 | 13..565 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:56:26 Download gff for
BO17349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15007914..15008466 | 13..565 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:01:42 Download gff for
BO17349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15007914..15008466 | 13..565 | 99 | | Plus |
BO17349.complete Sequence
583 bp assembled on 2008-08-15
GenBank Submission: FJ634084
> BO17349.complete
GAAGTTATCAGTCGACATGTCGAATCCGCAGGAAGAACTACTGCCGCCCA
GCGCCGAGGACGACGAGCTGACCCTGCCACGGGCCAGCATCAACAAGATC
ATCAAGGAGCTGGTGCCCACGGTGCGGGTGGCCAACGAGAGTCGCGAGCT
GATACTCAACTGCTGCTCAGAGTTCATTCATCTGATCAGTTCGGAGGCCA
ACGAGGTGTGCAACATGCGCAACAAGAAGACGATAAACGCAGAGCACGTC
CTGGAGGCGTTGGAACGCTTGGGTTTTCACGACTACAAACAAGAGGCGGA
GGCCGTTCTGCACGACTGCAAGGAGGTGGCAGCCAAGCGAAGGCGCCAGA
GCACGCGCCTAGAGAACCTGGGCATTCCGGAGGAGGAGCTGCTGCGCCAG
CAGCAGGAGCTGTTCGCCAAGGCACGCGAGGAGCAGGCGCGCGAGGAGCA
GCAGCAGTGGATGAGCATGCAAGCGGCAGCAATGGTGCAGCGACCACCGC
TGGCAGACGGCTCCGTTGCCAGCAAGCCAAGTGAGGATGACGATGACGAT
GACGACGACGACTACGCAAGCTTTCTAGACCAT
BO17349.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2beta-RA | 552 | CG4185-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2beta-RA | 726 | CG4185-RA | 105..654 | 16..565 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15007917..15008466 | 16..565 | 2750 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 375..604 | 339..566 | 154 | 56.8 | Plus |
BO17349.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:48 Download gff for
BO17349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2beta-RA | 96..648 | 13..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:35:41 Download gff for
BO17349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2beta-RA | 106..654 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:04 Download gff for
BO17349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2beta-RA | 100..648 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:42 Download gff for
BO17349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NC2beta-RA | 106..654 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:42 Download gff for
BO17349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15007918..15008466 | 17..567 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:35:41 Download gff for
BO17349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15007918..15008466 | 17..567 | 99 | | Plus |
BO17349.pep Sequence
Translation from 16 to 583
> BO17349.pep
MSNPQEELLPPSAEDDELTLPRASINKIIKELVPTVRVANESRELILNCC
SEFIHLISSEANEVCNMRNKKTINAEHVLEALERLGFHDYKQEAEAVLHD
CKEVAAKRRRQSTRLENLGIPEEELLRQQQELFAKAREEQAREEQQQWMS
MQAAAMVQRPPLADGSVASKPSEDDDDDDDDDYASFLDH
BO17349.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NC2beta-PA | 183 | CG4185-PA | 1..183 | 1..183 | 935 | 100 | Plus |
| Nf-YB-PB | 156 | CG10447-PB | 43..127 | 20..103 | 142 | 41.2 | Plus |
| Nf-YB-PA | 156 | CG10447-PA | 43..127 | 20..103 | 142 | 41.2 | Plus |
