Clone Sequence Records
BO17350.3prime Sequence
783 bp (712 high quality bases) assembled on 2006-10-13
> BO17350.3prime
ATGGTCTAGAAAGCTTGCAGACGACGCCACTTTGCCGTGAATCTCTGCCT
GGGCCACCTTCATCACGTCGAGGGCGCCGCGCTTGATCAGGTCCTCCGCC
AGCGTCTTGCCCAGCTGGTTGGCCTTCTCGTAGATGCCCCGACTGTGACA
GGCGTGCTGGTAGAGACCGCAGAACAGGTTTTCCACATCCTCAATGAGCA
CCGAGTGCTGCGGCGTCGGCTGCTCCTCGTCGGCGTAGTCGAACATTTGG
ACCGTTTTCTGCAGGAACGGGCACTTGGCTGTGGCTGCGTTTCCGTTGTC
CTTAGCCGGCGCCTCAAGACCGCTGCCCTGATGCATGGCCGCAAAGGGAC
ACTTGGAGGAAGTTGCAACATTATCCACTTCATCGCCAGCGCTGCTGGCA
TTACTGGCTCTGCTGCTCGGTGGCGTGGGCAAAATAGAAGCTGATGCTCC
TGCCACACCGCCAGTCACTGGACACTTTCCAGCTTGGGCAAAGGATACCT
TCACATCGTTGTTAACGTACGGACATTCGCCCATGAAGTCCTGACCCACG
GGCATCTGTAGTGGACAGTGAGCAGTGGTGGCCGATTCCCCTCCACTTCC
ACTCTTGGCGCTGAAGGAATCCCCAGAGTCTGCATGCGCTACTGGACATT
TGGCAGGAACCATTGCCTGATTGTGCGGCACTGGGCACTGGCCCATCACT
TCCTGACCGCCCACCAAGCGAAAAGGGCACTGACGGGGAATGGTGTTCAC
ATTGTTGGTATCCGCATCGCCACCACCAATAAC
BO17350.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9165-PA | 1959 | l(3)02640-RA | 1197..1956 | 778..19 | 3725 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)02640-RA | 2556 | CG9165-RA | 1544..2308 | 783..19 | 3765 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1338403..1339167 | 783..19 | 3765 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:18:25 has no hits.
BO17350.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:48 Download gff for
BO17350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9165-PA | 1192..1959 | 16..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:16:30 Download gff for
BO17350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 1544..2313 | 13..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:18 Download gff for
BO17350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 1544..2313 | 13..783 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:18 Download gff for
BO17350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1338403..1339172 | 13..783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:16:30 Download gff for
BO17350.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1338403..1339172 | 13..783 | 99 | | Minus |
BO17350.5prime Sequence
728 bp (657 high quality bases) assembled on 2006-10-13
> BO17350.5prime
GAAGTTATCAGTCGACATGTCGGCGCAGGAAAAGGTTATACGCGTTGGAT
CGCGAAAGAGCGAGCTCGCTCTGATTCAGACCAAACATGTCATCGGCCGC
CTGCAGAAGCTATATCCCAAGCAGAAATTCGAGATCCACACCATGTCGAC
ATTTGGCGATCGTGTGCTGAACGTTTCCCTTCCTAAGATTGGCGAGAAGA
GCCTGTTCACCCGCGACCTCGAGGATGCGCTGCGCAACGGTGGCGTTGAC
TTTGTGGTGCACTCCCTCAAGGATCTGCCTACAGCCCTGCCAACAGGAAT
GGCCATCGGAGCCGTGCTGGAGCGAGAAGATGCGCGGGACGCCCTCGTTC
TGCGGGAGAACTTCAAGGGCCACACGATAGCCTCGCTTCCAAAGGGCAGC
GTGATTGGAACCTCATCTCTTCGTCGCACAGCCCAGATTCGCAGGATGTA
TCCCCATTTGACGGTGTGCGACATCCGTGGAAATCTAAATACTCGACTGG
CCAAGCTGGATGCAGCCGATTCCAAGTTCTCCGGCATCATACTCGCTCAG
GCCGGCTTGGTGAGAATGGGCTGGATGAGTCGTATTAGCCAGGTGCTGGA
GCCGACCGACTTGCTCTATGCTGTTGGCCAAGGAGCCCTGGCCGTGGAGT
GTCGGGCTAATGACGACCAAGTGCTGGCAATGCTGCAGAAACTTATGTGC
CTGAATACAACGTGCCGCATCCTAGCAG
BO17350.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9165-PA | 1959 | l(3)02640-RA | 1..712 | 17..728 | 3560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)02640-RA | 2556 | CG9165-RA | 353..1064 | 17..728 | 3560 | 100 | Plus |
CG2211-RA | 1941 | CG2211-RA | 72..119 | 64..17 | 240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1337602..1337923 | 407..728 | 1610 | 100 | Plus |
3L | 28110227 | 3L | 1337271..1337541 | 138..408 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 1335942..1336016 | 63..137 | 375 | 100 | Plus |
3L | 28110227 | 3L | 1335241..1335288 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:23:13 has no hits.
BO17350.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:49 Download gff for
BO17350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9165-PA | 1..712 | 17..728 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:22:06 Download gff for
BO17350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 353..1064 | 17..728 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:02 Download gff for
BO17350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 353..1064 | 17..728 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:02 Download gff for
BO17350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1335241..1335288 | 17..64 | 100 | -> | Plus |
3L | 1335944..1336016 | 65..137 | 100 | -> | Plus |
3L | 1337271..1337540 | 138..407 | 100 | -> | Plus |
3L | 1337603..1337923 | 408..728 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:22:06 Download gff for
BO17350.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1335241..1335288 | 17..64 | 100 | -> | Plus |
arm_3L | 1335944..1336016 | 65..137 | 100 | -> | Plus |
arm_3L | 1337271..1337540 | 138..407 | 100 | -> | Plus |
arm_3L | 1337603..1337923 | 408..728 | 100 | | Plus |
BO17350.complete Sequence
1990 bp assembled on 2007-03-23
GenBank Submission: FJ634085
> BO17350.complete
GAAGTTATCAGTCGACATGTCGGCGCAGGAAAAGGTTATACGCGTTGGAT
CGCGAAAGAGCGAGCTCGCTCTGATTCAGACCAAACATGTCATCGGCCGC
CTGCAGAAGCTATATCCCAAGCAGAAATTCGAGATCCACACCATGTCGAC
ATTTGGCGATCGTGTGCTGAACGTTTCCCTTCCTAAGATTGGCGAGAAGA
GCCTGTTCACCCGCGACCTCGAGGATGCGCTGCGCAACGGTGGCGTTGAC
TTTGTGGTGCACTCCCTCAAGGATCTGCCTACAGCCCTGCCAACAGGAAT
GGCCATCGGAGCCGTGCTGGAGCGAGAAGATGCGCGGGACGCCCTCGTTC
TGCGGGAGAACTTCAAGGGCCACACGATAGCCTCGCTTCCAAAGGGCAGC
GTGATTGGAACCTCATCTCTTCGTCGCACAGCCCAGATTCGCAGGATGTA
TCCCCATTTGACGGTGTGCGACATCCGTGGAAATCTAAATACTCGACTGG
CCAAGCTGGATGCAGCCGATTCCAAGTTCTCCGGCATCATACTCGCTCAG
GCCGGCTTGGTGAGAATGGGCTGGATGAGTCGTATTAGCCAGGTGCTGGA
GCCGACCGACTTGCTCTATGCTGTTGGCCAAGGAGCCCTGGCCGTGGAGT
GTCGGGCTAATGACGACCAAGTGCTGGCAATGCTGCAGAAACTTATGTGC
CTGAATACAACGTGCCGCATCCTAGCAGAACGAAGCTTCCTGAAGACTTT
GGGAGGGGGTTGCTCCGCCCCCGTGGCTGTTTGGAGCAACTTAAAGGGCG
AGCCCTTGAATGGAAACAGCCAGGAGGTGGGACTATCCCTCACCGGTGCA
GTTTGGAGCCTGGATGGTGCAATAGAGATACGGAACCATCTGGCATGTGC
CTTAAATGAACAAAAATTGGAGGGGGACCAACGGAAACGAGGGGCCCAGG
AGGCCACCAGCCAGTTGCAGGAGGAGACCAGCAGCAGCTGCGATTCTCCC
CCGGCCACGAAGCGTGCCAGAAATGGCAACGACAGTTCGGGTTCGGACTC
GAATTCCAGCAGTCCGCGCCAGCAAGGCAGCCCTCCAGTGATCTGTGAGG
ATGCGGCTGCTTGCGCAGCTCTCTCCGGTTACACTGTGGATCAGCTCTCG
GATCTGGCCAGTCACTGCCCAGTGCTGAGTAACAACAATGCTGTGGGACC
TACCGGAGTTAGTGGTGGTGGCGATGCGGATACCAACAATGTGAACACCA
CTCCCCGTCAGTGCCCTCTTCGCTTGGTGGGCGGTCAGGAAGTGATGGGC
CAGTGCCCAGTGCCGCACAATCAGGCAATGGTTCCTGCCAAATGTCCAGT
AGCGCATGCAGACTCTGGGGATTCCTTCAGCGCCAAGAGTGGAAGTGGAG
GGGAATCGGCCACCACTGCTCACTGTCCACTACAGATGCCCGTGGGTCAG
GACTTCATGGGCGAATGTCCGTACGTTAACAACGATGTGAAGGTATCCTT
TGCCCAAGCTGGAAAGTGTCCAGTGACTGGCGGTGTGGCAGGAGCATCAG
CTTCTATTTTGCCCACGCCACCGAGCAGCAGAGCCAGTAATGCCAGCAGC
GCTGGCGATGAAGTGGATAATGTTGCAACTTCCTCCAAGTGTCCCTTTGC
GGCCATGCATCAGGGCAGCGGTCTTGAGGCGCCGGCTAAGGACAACGGAA
ACGCAGCCACAGCCAAGTGCCCGTTCCTGCAGAAAACGGTCCAAATGTTC
GACTACGCCGACGAGGAGCAGCCGACGCCGCAGCACTCGGTGCTCATTGA
GGATGTGGAAAACCTGTTCTGCGGTCTCTACCAGCACGCCTGTCACAGTC
GGGGCATCTACGAGAAGGCCAACCAGCTGGGCAAGACGCTGGCGGAGGAC
CTGATCAAGCGCGGCGCCCTCGACGTGATGAAGGTGGCCCAGGCAGAGAT
TCACGGCAAAGTGGCGTCGTCTGCAAGCTTTCTAGACCAT
BO17350.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)02640-RA | 1959 | CG9165-PA | 1..1956 | 17..1972 | 9765 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)02640-RA | 2556 | CG9165-RA | 353..2308 | 17..1972 | 9765 | 99.9 | Plus |
CG2211-RA | 1941 | CG2211-RA | 72..119 | 64..17 | 240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1337602..1339167 | 407..1972 | 7815 | 99.9 | Plus |
3L | 28110227 | 3L | 1337271..1337541 | 138..408 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 1335942..1336016 | 63..137 | 375 | 100 | Plus |
3L | 28110227 | 3L | 1335241..1335288 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:45:47 has no hits.
BO17350.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:28 Download gff for
BO17350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 1..1959 | 17..1975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:00 Download gff for
BO17350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 365..2325 | 17..1978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:17 Download gff for
BO17350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 353..2308 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:28 Download gff for
BO17350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 365..2325 | 17..1978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:57 Download gff for
BO17350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)02640-RA | 353..2308 | 17..1974 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:57 Download gff for
BO17350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1335241..1335288 | 17..64 | 100 | -> | Plus |
3L | 1335944..1336016 | 65..137 | 100 | -> | Plus |
3L | 1337271..1337540 | 138..407 | 100 | -> | Plus |
3L | 1337603..1339167 | 408..1974 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:17 Download gff for
BO17350.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1335241..1335288 | 17..64 | 100 | -> | Plus |
arm_3L | 1335944..1336016 | 65..137 | 100 | -> | Plus |
arm_3L | 1337271..1337540 | 138..407 | 100 | -> | Plus |
arm_3L | 1337603..1339167 | 408..1974 | 99 | | Plus |
BO17350.pep Sequence
Translation from 16 to 1990
> BO17350.pep
MSAQEKVIRVGSRKSELALIQTKHVIGRLQKLYPKQKFEIHTMSTFGDRV
LNVSLPKIGEKSLFTRDLEDALRNGGVDFVVHSLKDLPTALPTGMAIGAV
LEREDARDALVLRENFKGHTIASLPKGSVIGTSSLRRTAQIRRMYPHLTV
CDIRGNLNTRLAKLDAADSKFSGIILAQAGLVRMGWMSRISQVLEPTDLL
YAVGQGALAVECRANDDQVLAMLQKLMCLNTTCRILAERSFLKTLGGGCS
APVAVWSNLKGEPLNGNSQEVGLSLTGAVWSLDGAIEIRNHLACALNEQK
LEGDQRKRGAQEATSQLQEETSSSCDSPPATKRARNGNDSSGSDSNSSSP
RQQGSPPVICEDAAACAALSGYTVDQLSDLASHCPVLSNNNAVGPTGVSG
GGDADTNNVNTTPRQCPLRLVGGQEVMGQCPVPHNQAMVPAKCPVAHADS
GDSFSAKSGSGGESATTAHCPLQMPVGQDFMGECPYVNNDVKVSFAQAGK
CPVTGGVAGASASILPTPPSSRASNASSAGDEVDNVATSSKCPFAAMHQG
SGLEAPAKDNGNAATAKCPFLQKTVQMFDYADEEQPTPQHSVLIEDVENL
FCGLYQHACHSRGIYEKANQLGKTLAEDLIKRGALDVMKVAQAEIHGKVA
SSASFLDH
BO17350.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)02640-PA | 652 | CG9165-PA | 1..652 | 1..652 | 3366 | 100 | Plus |