Clone BO17350 Report

Search the DGRC for BO17350

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)02640-RA
Protein status:BO17350.pep: validated full length
Sequenced Size:1990

Clone Sequence Records

BO17350.3prime Sequence

783 bp (712 high quality bases) assembled on 2006-10-13

> BO17350.3prime
ATGGTCTAGAAAGCTTGCAGACGACGCCACTTTGCCGTGAATCTCTGCCT
GGGCCACCTTCATCACGTCGAGGGCGCCGCGCTTGATCAGGTCCTCCGCC
AGCGTCTTGCCCAGCTGGTTGGCCTTCTCGTAGATGCCCCGACTGTGACA
GGCGTGCTGGTAGAGACCGCAGAACAGGTTTTCCACATCCTCAATGAGCA
CCGAGTGCTGCGGCGTCGGCTGCTCCTCGTCGGCGTAGTCGAACATTTGG
ACCGTTTTCTGCAGGAACGGGCACTTGGCTGTGGCTGCGTTTCCGTTGTC
CTTAGCCGGCGCCTCAAGACCGCTGCCCTGATGCATGGCCGCAAAGGGAC
ACTTGGAGGAAGTTGCAACATTATCCACTTCATCGCCAGCGCTGCTGGCA
TTACTGGCTCTGCTGCTCGGTGGCGTGGGCAAAATAGAAGCTGATGCTCC
TGCCACACCGCCAGTCACTGGACACTTTCCAGCTTGGGCAAAGGATACCT
TCACATCGTTGTTAACGTACGGACATTCGCCCATGAAGTCCTGACCCACG
GGCATCTGTAGTGGACAGTGAGCAGTGGTGGCCGATTCCCCTCCACTTCC
ACTCTTGGCGCTGAAGGAATCCCCAGAGTCTGCATGCGCTACTGGACATT
TGGCAGGAACCATTGCCTGATTGTGCGGCACTGGGCACTGGCCCATCACT
TCCTGACCGCCCACCAAGCGAAAAGGGCACTGACGGGGAATGGTGTTCAC
ATTGTTGGTATCCGCATCGCCACCACCAATAAC

BO17350.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9165-PA 1959 l(3)02640-RA 1197..1956 778..19 3725 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-RA 2556 CG9165-RA 1544..2308 783..19 3765 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1338403..1339167 783..19 3765 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 06:18:25 has no hits.

BO17350.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:48 Download gff for BO17350.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9165-PA 1192..1959 16..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:16:30 Download gff for BO17350.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1544..2313 13..783 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:18 Download gff for BO17350.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1544..2313 13..783 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:18 Download gff for BO17350.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1338403..1339172 13..783 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:16:30 Download gff for BO17350.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1338403..1339172 13..783 99   Minus

BO17350.5prime Sequence

728 bp (657 high quality bases) assembled on 2006-10-13

> BO17350.5prime
GAAGTTATCAGTCGACATGTCGGCGCAGGAAAAGGTTATACGCGTTGGAT
CGCGAAAGAGCGAGCTCGCTCTGATTCAGACCAAACATGTCATCGGCCGC
CTGCAGAAGCTATATCCCAAGCAGAAATTCGAGATCCACACCATGTCGAC
ATTTGGCGATCGTGTGCTGAACGTTTCCCTTCCTAAGATTGGCGAGAAGA
GCCTGTTCACCCGCGACCTCGAGGATGCGCTGCGCAACGGTGGCGTTGAC
TTTGTGGTGCACTCCCTCAAGGATCTGCCTACAGCCCTGCCAACAGGAAT
GGCCATCGGAGCCGTGCTGGAGCGAGAAGATGCGCGGGACGCCCTCGTTC
TGCGGGAGAACTTCAAGGGCCACACGATAGCCTCGCTTCCAAAGGGCAGC
GTGATTGGAACCTCATCTCTTCGTCGCACAGCCCAGATTCGCAGGATGTA
TCCCCATTTGACGGTGTGCGACATCCGTGGAAATCTAAATACTCGACTGG
CCAAGCTGGATGCAGCCGATTCCAAGTTCTCCGGCATCATACTCGCTCAG
GCCGGCTTGGTGAGAATGGGCTGGATGAGTCGTATTAGCCAGGTGCTGGA
GCCGACCGACTTGCTCTATGCTGTTGGCCAAGGAGCCCTGGCCGTGGAGT
GTCGGGCTAATGACGACCAAGTGCTGGCAATGCTGCAGAAACTTATGTGC
CTGAATACAACGTGCCGCATCCTAGCAG

BO17350.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9165-PA 1959 l(3)02640-RA 1..712 17..728 3560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-RA 2556 CG9165-RA 353..1064 17..728 3560 100 Plus
CG2211-RA 1941 CG2211-RA 72..119 64..17 240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1337602..1337923 407..728 1610 100 Plus
3L 28110227 3L 1337271..1337541 138..408 1355 100 Plus
3L 28110227 3L 1335942..1336016 63..137 375 100 Plus
3L 28110227 3L 1335241..1335288 17..64 240 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:23:13 has no hits.

BO17350.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:49 Download gff for BO17350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9165-PA 1..712 17..728 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:22:06 Download gff for BO17350.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 353..1064 17..728 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:02 Download gff for BO17350.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 353..1064 17..728 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:02 Download gff for BO17350.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1335241..1335288 17..64 100 -> Plus
3L 1335944..1336016 65..137 100 -> Plus
3L 1337271..1337540 138..407 100 -> Plus
3L 1337603..1337923 408..728 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:22:06 Download gff for BO17350.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1335241..1335288 17..64 100 -> Plus
arm_3L 1335944..1336016 65..137 100 -> Plus
arm_3L 1337271..1337540 138..407 100 -> Plus
arm_3L 1337603..1337923 408..728 100   Plus

BO17350.complete Sequence

1990 bp assembled on 2007-03-23

GenBank Submission: FJ634085

> BO17350.complete
GAAGTTATCAGTCGACATGTCGGCGCAGGAAAAGGTTATACGCGTTGGAT
CGCGAAAGAGCGAGCTCGCTCTGATTCAGACCAAACATGTCATCGGCCGC
CTGCAGAAGCTATATCCCAAGCAGAAATTCGAGATCCACACCATGTCGAC
ATTTGGCGATCGTGTGCTGAACGTTTCCCTTCCTAAGATTGGCGAGAAGA
GCCTGTTCACCCGCGACCTCGAGGATGCGCTGCGCAACGGTGGCGTTGAC
TTTGTGGTGCACTCCCTCAAGGATCTGCCTACAGCCCTGCCAACAGGAAT
GGCCATCGGAGCCGTGCTGGAGCGAGAAGATGCGCGGGACGCCCTCGTTC
TGCGGGAGAACTTCAAGGGCCACACGATAGCCTCGCTTCCAAAGGGCAGC
GTGATTGGAACCTCATCTCTTCGTCGCACAGCCCAGATTCGCAGGATGTA
TCCCCATTTGACGGTGTGCGACATCCGTGGAAATCTAAATACTCGACTGG
CCAAGCTGGATGCAGCCGATTCCAAGTTCTCCGGCATCATACTCGCTCAG
GCCGGCTTGGTGAGAATGGGCTGGATGAGTCGTATTAGCCAGGTGCTGGA
GCCGACCGACTTGCTCTATGCTGTTGGCCAAGGAGCCCTGGCCGTGGAGT
GTCGGGCTAATGACGACCAAGTGCTGGCAATGCTGCAGAAACTTATGTGC
CTGAATACAACGTGCCGCATCCTAGCAGAACGAAGCTTCCTGAAGACTTT
GGGAGGGGGTTGCTCCGCCCCCGTGGCTGTTTGGAGCAACTTAAAGGGCG
AGCCCTTGAATGGAAACAGCCAGGAGGTGGGACTATCCCTCACCGGTGCA
GTTTGGAGCCTGGATGGTGCAATAGAGATACGGAACCATCTGGCATGTGC
CTTAAATGAACAAAAATTGGAGGGGGACCAACGGAAACGAGGGGCCCAGG
AGGCCACCAGCCAGTTGCAGGAGGAGACCAGCAGCAGCTGCGATTCTCCC
CCGGCCACGAAGCGTGCCAGAAATGGCAACGACAGTTCGGGTTCGGACTC
GAATTCCAGCAGTCCGCGCCAGCAAGGCAGCCCTCCAGTGATCTGTGAGG
ATGCGGCTGCTTGCGCAGCTCTCTCCGGTTACACTGTGGATCAGCTCTCG
GATCTGGCCAGTCACTGCCCAGTGCTGAGTAACAACAATGCTGTGGGACC
TACCGGAGTTAGTGGTGGTGGCGATGCGGATACCAACAATGTGAACACCA
CTCCCCGTCAGTGCCCTCTTCGCTTGGTGGGCGGTCAGGAAGTGATGGGC
CAGTGCCCAGTGCCGCACAATCAGGCAATGGTTCCTGCCAAATGTCCAGT
AGCGCATGCAGACTCTGGGGATTCCTTCAGCGCCAAGAGTGGAAGTGGAG
GGGAATCGGCCACCACTGCTCACTGTCCACTACAGATGCCCGTGGGTCAG
GACTTCATGGGCGAATGTCCGTACGTTAACAACGATGTGAAGGTATCCTT
TGCCCAAGCTGGAAAGTGTCCAGTGACTGGCGGTGTGGCAGGAGCATCAG
CTTCTATTTTGCCCACGCCACCGAGCAGCAGAGCCAGTAATGCCAGCAGC
GCTGGCGATGAAGTGGATAATGTTGCAACTTCCTCCAAGTGTCCCTTTGC
GGCCATGCATCAGGGCAGCGGTCTTGAGGCGCCGGCTAAGGACAACGGAA
ACGCAGCCACAGCCAAGTGCCCGTTCCTGCAGAAAACGGTCCAAATGTTC
GACTACGCCGACGAGGAGCAGCCGACGCCGCAGCACTCGGTGCTCATTGA
GGATGTGGAAAACCTGTTCTGCGGTCTCTACCAGCACGCCTGTCACAGTC
GGGGCATCTACGAGAAGGCCAACCAGCTGGGCAAGACGCTGGCGGAGGAC
CTGATCAAGCGCGGCGCCCTCGACGTGATGAAGGTGGCCCAGGCAGAGAT
TCACGGCAAAGTGGCGTCGTCTGCAAGCTTTCTAGACCAT

BO17350.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-RA 1959 CG9165-PA 1..1956 17..1972 9765 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-RA 2556 CG9165-RA 353..2308 17..1972 9765 99.9 Plus
CG2211-RA 1941 CG2211-RA 72..119 64..17 240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1337602..1339167 407..1972 7815 99.9 Plus
3L 28110227 3L 1337271..1337541 138..408 1355 100 Plus
3L 28110227 3L 1335942..1336016 63..137 375 100 Plus
3L 28110227 3L 1335241..1335288 17..64 240 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:45:47 has no hits.

BO17350.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:28 Download gff for BO17350.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 1..1959 17..1975 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:00 Download gff for BO17350.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 365..2325 17..1978 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:17 Download gff for BO17350.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 353..2308 17..1974 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:28 Download gff for BO17350.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 365..2325 17..1978 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:57 Download gff for BO17350.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)02640-RA 353..2308 17..1974 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:57 Download gff for BO17350.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1335241..1335288 17..64 100 -> Plus
3L 1335944..1336016 65..137 100 -> Plus
3L 1337271..1337540 138..407 100 -> Plus
3L 1337603..1339167 408..1974 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:17 Download gff for BO17350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1335241..1335288 17..64 100 -> Plus
arm_3L 1335944..1336016 65..137 100 -> Plus
arm_3L 1337271..1337540 138..407 100 -> Plus
arm_3L 1337603..1339167 408..1974 99   Plus

BO17350.pep Sequence

Translation from 16 to 1990

> BO17350.pep
MSAQEKVIRVGSRKSELALIQTKHVIGRLQKLYPKQKFEIHTMSTFGDRV
LNVSLPKIGEKSLFTRDLEDALRNGGVDFVVHSLKDLPTALPTGMAIGAV
LEREDARDALVLRENFKGHTIASLPKGSVIGTSSLRRTAQIRRMYPHLTV
CDIRGNLNTRLAKLDAADSKFSGIILAQAGLVRMGWMSRISQVLEPTDLL
YAVGQGALAVECRANDDQVLAMLQKLMCLNTTCRILAERSFLKTLGGGCS
APVAVWSNLKGEPLNGNSQEVGLSLTGAVWSLDGAIEIRNHLACALNEQK
LEGDQRKRGAQEATSQLQEETSSSCDSPPATKRARNGNDSSGSDSNSSSP
RQQGSPPVICEDAAACAALSGYTVDQLSDLASHCPVLSNNNAVGPTGVSG
GGDADTNNVNTTPRQCPLRLVGGQEVMGQCPVPHNQAMVPAKCPVAHADS
GDSFSAKSGSGGESATTAHCPLQMPVGQDFMGECPYVNNDVKVSFAQAGK
CPVTGGVAGASASILPTPPSSRASNASSAGDEVDNVATSSKCPFAAMHQG
SGLEAPAKDNGNAATAKCPFLQKTVQMFDYADEEQPTPQHSVLIEDVENL
FCGLYQHACHSRGIYEKANQLGKTLAEDLIKRGALDVMKVAQAEIHGKVA
SSASFLDH

BO17350.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)02640-PA 652 CG9165-PA 1..652 1..652 3366 100 Plus