Clone BO17353 Report

Search the DGRC for BO17353

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG17660-RA
Protein status:BO17353.pep: validated full length
Sequenced Size:1642

Clone Sequence Records

BO17353.3prime Sequence

881 bp (722 high quality bases) assembled on 2006-10-13

> BO17353.3prime
ATGGTCTAGAAAGCTTGCTTGCATTTTCGACACCTCGAACTTGGTGTTGA
TGATTTCCTCATCGGAGTCCAGGATGGGCAACGCCGAGTCCGCCATCGAA
GACGGTATGTTCTCCTCCACCCAGCGCAGGTCGTCTTCCTCGGTGGTCGT
GGCATTTCGTGAAGTCGTCGACGTTTTCGGCGTTCCATTCTGGCCGCGCA
TTTTCACGCCGTAGGCATCCGCGACGAACTGATCCTCCTCGTCCTCATCG
TCTTCGTCTTCCGGGTTATCCAGCAGCGGAGTGAAGGCATAGCGCTGGTT
GTTATTCGTCGGTCGCCATAGAATCATAATCACCAGCAGCAGAACCGAAA
ACAAAATGTGCCAAAAGCCAGTATCCACCCAAATGTCGCGCCAGCCAGGC
GTGCAATTCTCGACCCTACGCAAACGCAAAGCAAACAGCATGAATATGAC
GGAAGCGATAACAGCGAAGATCAGCGTGTTGGTGAAGTGCCTGTACAGTG
AGAGCTTGACCATATTCCTCCTCAGTCGGAGAGTGCGAGTTGTCTGCACG
AGCGAGGTGAATATCCACCAGCATATTCCTGTGTCCAGCACCGCCAGTGG
AATGCTCGCCACCAGCAGCTCGCTGCGATCGGTCTTCACATTGGTGATAC
GCAAGTAGCTCTCCACGCAGGCCAGCACAAAGTAGAGGGTTCCCACGCCC
ACCACGCGATGCAGCATGGGTCCCAAACGGGGTTTGACAATGCCAAAGCC
GAGACTCATGATGATGACCAGCATCCTGGCCAGCGTGCGCTTCGCACAGG
ACACAACCTCGGCCACCAGTTCGGCGTGCTGAACTGCAACACCCTTGGTT
CGTAGCGTTTGGTATTCGGCGTAAAAAAAAG

BO17353.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-PA 1611 CG17660-RA 780..1608 847..19 4120 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-RA 2357 CG17660-RA 860..1714 873..19 4215 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1707775..1707999 19..243 1125 100 Plus
2L 23513712 2L 1708461..1708677 517..733 1085 100 Plus
2L 23513712 2L 1708061..1708214 243..396 770 100 Plus
2L 23513712 2L 1708281..1708404 396..519 620 100 Plus
2L 23513712 2L 1708821..1708960 734..873 610 95.7 Plus
Blast to na_te.dros performed 2015-02-08 12:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 557..596 278..239 110 75 Minus

BO17353.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:49 Download gff for BO17353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-PA 746..1611 15..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:03 Download gff for BO17353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 852..1720 12..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:37 Download gff for BO17353.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 852..1720 12..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:37 Download gff for BO17353.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1707769..1707998 12..242 99 <- Plus
2L 1708061..1708214 243..396 100 <- Plus
2L 1708282..1708402 397..517 100 <- Plus
2L 1708462..1708677 518..733 100 <- Plus
2L 1708821..1708967 734..881 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:03 Download gff for BO17353.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1707769..1707998 12..242 99 <- Plus
arm_2L 1708061..1708214 243..396 100 <- Plus
arm_2L 1708282..1708402 397..517 100 <- Plus
arm_2L 1708462..1708677 518..733 100 <- Plus
arm_2L 1708821..1708967 734..881 95   Plus

BO17353.5prime Sequence

937 bp (755 high quality bases) assembled on 2006-10-13

> BO17353.5prime
GAAGTTATCAGTCGACATGCAGGGATCGGCCACGCTGTTGGTGGTTGCGT
TGGCCTTGCTACTTGGCCCGGCGAGCACGGCCGGGAAATCGGATCCGGGC
ATGGTGGACGTGCTGGTGACCACGGACTTGCCCAGCATCCGGGAGCAGCG
TCCGCTGCTGGCCAACACAAAAATCTACGCGCAGATTAAGGGCTGCACTT
CCAATGTGGAATCGAACCTGACCATTACGTTCCGGCTGACGGAGCACCCC
TGCATCTTTGATGACCGCACGCTGCAGGCCATCGCCCAGAATGCTACCCT
GCAGAAGAACGCCACCATCAATAACGTCATCACCGAGATCACCAGGACAT
ATCCCTGCAACGGACTCATCGTCCTGGCGATAAACAAGGACAAGGTGGTC
GAAGGATCAGCGATCCCAACACCGGAGCCAAAGCATCCAATGCTGGAGCA
CAAGCACCCACTTTCGCCCACAACGAACCCAATTGCGAGCGTCAAGGAGG
ATGGCATTTACGAAATCGAAGTTAACATCGCGGCGGGCCCATCCGCGCAG
TTCAGTGCCGTGGTGCACATAGAGTTCCTGGGCCCACACGGCTTCATCTC
GGCCATAGATTGGCCATTCCTGCCGTTCTATCTGATCATGTGCATTGTTT
ACGTGATATTTGGAATTATTTGGCTGTTTGTTTCTTTCGCGCAATGGCGG
GATCTTTTGAGAATTCAATTCTGGATCGGTGGCGTCATACTGCTGGGAAT
GCTAGAGAAGGCCTTCTTCTACGCCGAATACCAAACGCTGACGAACAAGG
GTGTTGCAGTTCAGCACGCCGAACTGGTGGCCGAGTTTGTGTCCTGTGCG
AAGCGCACGCTGGCCAGGATGCTGGTCATCATCATGAGTCTCGGCTTTGG
CATTGTCAAACCCCGTTTGGGACCCATGCTGCATCCC

BO17353.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-PA 1611 CG17660-RA 1..919 17..935 4595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-RA 2357 CG17660-RA 102..1025 12..935 4605 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1708821..1709105 909..625 1425 100 Minus
2L 23513712 2L 1709617..1709812 466..271 980 100 Minus
2L 23513712 2L 1709174..1709333 625..466 800 100 Minus
2L 23513712 2L 1710207..1710320 125..12 555 99.1 Minus
2L 23513712 2L 1709878..1709963 271..186 430 100 Minus
2L 23513712 2L 1710038..1710104 190..124 320 98.5 Minus
Blast to na_te.dros performed on 2015-02-06 10:37:02 has no hits.

BO17353.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:50 Download gff for BO17353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-PA 1..921 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:30 Download gff for BO17353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 102..1027 12..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:45 Download gff for BO17353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 102..1027 12..937 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:45 Download gff for BO17353.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1708650..1708677 910..937 96 <- Minus
2L 1708821..1709104 626..909 100 <- Minus
2L 1709174..1709332 467..625 100 <- Minus
2L 1709617..1709811 272..466 100 <- Minus
2L 1709878..1709963 186..271 100 <- Minus
2L 1710043..1710103 125..185 100 <- Minus
2L 1710208..1710320 12..124 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:30 Download gff for BO17353.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1710208..1710320 12..124 99   Minus
arm_2L 1708650..1708677 910..937 96 <- Minus
arm_2L 1708821..1709104 626..909 100 <- Minus
arm_2L 1709174..1709332 467..625 100 <- Minus
arm_2L 1709617..1709811 272..466 100 <- Minus
arm_2L 1709878..1709963 186..271 100 <- Minus
arm_2L 1710043..1710103 125..185 100 <- Minus

BO17353.complete Sequence

1642 bp assembled on 2006-10-11

GenBank Submission: FJ634086

> BO17353.complete
GAAGTTATCAGTCGACATGCAGGGATCGGCCACGCTGTTGGTGGTTGCGT
TGGCCTTGCTACTTGGCCCGGCGAGCACGGCCGGGAAATCGGATCCGGGC
ATGGTGGACGTGCTGGTGACCACGGACTTGCCCAGCATCCGGGAGCAGCG
TCCGCTGCTGGCCAACACAAAAATCTACGCGCAGATTAAGGGCTGCACTT
CCAATGTGGAATCGAACCTGACCATTACGTTCCGGCTGACGGAGCACCCC
TGCATCTTTGATGACCGCACGCTGCAGGCCATCGCCCAGAATGCTACCCT
GCAGAAGAACGCCACCATCAATAACGTCATCACCGAGATCACCAGGACAT
ATCCCTGCAACGGACTCATCGTCCTGGCGATAAACAAGGACAAGGTGGTC
GAAGGATCAGCGATCCCAACACCGGAGCCAAAGCATCCAATGCTGGAGCA
CAAGCACCCACTTTCGCCCACAACGAACCCAATTGCGAGCGTCAAGGAGG
ATGGCATTTACGAAATCGAAGTTAACATCGCGGCGGGCCCATCCGCGCAG
TTCAGTGCCGTGGTGCACATAGAGTTCCTGGGCCCACACGGCTTCATCTC
GGCCATAGATTGGCCATTCCTGCCGTTCTATCTGATCATGTGCATTGTTT
ACGTGATATTTGGAATTATTTGGCTGTTTGTTTCTTTCGCGCAATGGCGG
GATCTTTTGAGAATTCAATTCTGGATCGGTGGCGTCATACTGCTGGGAAT
GCTAGAGAAGGCCTTCTTCTACGCCGAATACCAAACGCTGACGAACAAGG
GTGTTGCAGTTCAGCACGCCGAACTGGTGGCCGAGTTTGTGTCCTGTGCG
AAGCGCACGCTGGCCAGGATGCTGGTCATCATCATGAGTCTCGGCTTTGG
CATTGTCAAACCCCGTTTGGGACCCATGCTGCATCGCGTGGTGGGCGTGG
GAACCCTCTACTTTGTGCTGGCCTGCGTGGAGAGCTACTTGCGTATCACC
AATGTGAAGACCGATCGCAGCGAGCTGCTGGTGGCGAGCATTCCACTGGC
GGTGCTGGACACAGGAATATGCTGGTGGATATTCACCTCGCTCGTGCAGA
CAACTCGCACTCTCCGACTGAGGAGGAATATGGTCAAGCTCTCACTGTAC
AGGCACTTCACCAACACGCTGATCTTCGCTGTTATCGCTTCCGTCATATT
CATGCTGTTTGCTTTGCGTTTGCGTAGGGTCGAGAATTGCACGCCTGGCT
GGCGCGACATTTGGGTGGATACTGGCTTTTGGCACATTTTGTTTTCGGTT
CTGCTGCTGGTGATTATGATTCTATGGCGACCGACGAATAACAACCAGCG
CTATGCCTTCACTCCGCTGCTGGATAACCCGGAAGACGAAGACGATGAGG
ACGAGGAGGATCAGTTCGTCGCGGATGCCTACGGCGTGAAAATGCGCGGC
CAGAATGGAACGCCGAAAACGTCGACGACTTCACGAAATGCCACGACCAC
CGAGGAAGACGACCTGCGCTGGGTGGAGGAGAACATACCGTCTTCGATGG
CGGACTCGGCGTTGCCCATCCTGGACTCCGATGAGGAAATCATCAACACC
AAGTTCGAGGTGTCGAAAATGCAAGCAAGCTTTCTAGACCAT

BO17353.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-RA 1611 CG17660-PA 1..1608 17..1624 8040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-RA 2357 CG17660-RA 102..1714 12..1624 8050 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1708821..1709105 909..625 1425 100 Minus
2L 23513712 2L 1707775..1707999 1624..1400 1125 100 Minus
2L 23513712 2L 1708461..1708677 1126..910 1085 100 Minus
2L 23513712 2L 1709617..1709812 466..271 980 100 Minus
2L 23513712 2L 1709174..1709333 625..466 800 100 Minus
2L 23513712 2L 1708061..1708214 1400..1247 770 100 Minus
2L 23513712 2L 1708281..1708404 1247..1124 620 100 Minus
2L 23513712 2L 1710207..1710320 125..12 555 99.1 Minus
2L 23513712 2L 1709878..1709963 271..186 430 100 Minus
2L 23513712 2L 1710038..1710104 190..124 320 98.5 Minus
Blast to na_te.dros performed on 2014-11-26 16:52:11 has no hits.

BO17353.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:37 Download gff for BO17353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 1..1611 17..1628 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:47 Download gff for BO17353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 96..1714 12..1631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:51 Download gff for BO17353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 107..1714 17..1626 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:37 Download gff for BO17353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 96..1714 12..1631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:21 Download gff for BO17353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17660-RA 107..1714 17..1626 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:21 Download gff for BO17353.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1708282..1708402 1126..1246 100 <- Minus
2L 1709617..1709811 272..466 100 <- Minus
2L 1709878..1709963 186..271 100 <- Minus
2L 1710043..1710103 125..185 100 <- Minus
2L 1710208..1710315 17..124 100   Minus
2L 1708462..1708677 910..1125 100 <- Minus
2L 1708821..1709104 626..909 100 <- Minus
2L 1709174..1709332 467..625 100 <- Minus
2L 1707773..1707998 1401..1626 99 <- Minus
2L 1708061..1708214 1247..1400 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:51 Download gff for BO17353.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1710043..1710103 125..185 100 <- Minus
arm_2L 1710208..1710315 17..124 100   Minus
arm_2L 1708821..1709104 626..909 100 <- Minus
arm_2L 1707773..1707998 1401..1626 99 <- Minus
arm_2L 1708061..1708214 1247..1400 100 <- Minus
arm_2L 1708282..1708402 1126..1246 100 <- Minus
arm_2L 1709174..1709332 467..625 100 <- Minus
arm_2L 1709617..1709811 272..466 100 <- Minus
arm_2L 1709878..1709963 186..271 100 <- Minus
arm_2L 1708462..1708677 910..1125 100 <- Minus

BO17353.pep Sequence

Translation from 16 to 1642

> BO17353.pep
MQGSATLLVVALALLLGPASTAGKSDPGMVDVLVTTDLPSIREQRPLLAN
TKIYAQIKGCTSNVESNLTITFRLTEHPCIFDDRTLQAIAQNATLQKNAT
INNVITEITRTYPCNGLIVLAINKDKVVEGSAIPTPEPKHPMLEHKHPLS
PTTNPIASVKEDGIYEIEVNIAAGPSAQFSAVVHIEFLGPHGFISAIDWP
FLPFYLIMCIVYVIFGIIWLFVSFAQWRDLLRIQFWIGGVILLGMLEKAF
FYAEYQTLTNKGVAVQHAELVAEFVSCAKRTLARMLVIIMSLGFGIVKPR
LGPMLHRVVGVGTLYFVLACVESYLRITNVKTDRSELLVASIPLAVLDTG
ICWWIFTSLVQTTRTLRLRRNMVKLSLYRHFTNTLIFAVIASVIFMLFAL
RLRRVENCTPGWRDIWVDTGFWHILFSVLLLVIMILWRPTNNNQRYAFTP
LLDNPEDEDDEDEEDQFVADAYGVKMRGQNGTPKTSTTSRNATTTEEDDL
RWVEENIPSSMADSALPILDSDEEIINTKFEVSKMQASFLDH

BO17353.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17660-PA 536 CG17660-PA 1..536 1..536 2771 100 Plus