Clone Sequence Records
BO17355.3prime Sequence
551 bp (551 high quality bases) assembled on 2006-10-13
> BO17355.3prime
ATGGTCTAGAAAGCTTGCCGTTTGGTGGTCGTAGTTGTTGCCAAAATAGA
TGGCTTTATTACTGGGCAACTCGGGCTTGGGTCGATTGAGTTCCACGTAG
AGCACAATCAATCCGGTGGCCAGGACCAACAGGATCAGCGTGATCAGCAG
GATGGTGTTCCGAGTGACCCGCCTAGATGGCGACTTATCACGACTTCGAT
TGGCGTTGCCATTACCATTGGCATTGTTGCTGTTGATTCCTGCAGCCGTT
TGCATGGCGTGTGCCTCCATATAATCCATATAGTATATGGATACCGGTCC
CTGGTATTGGGTCATGGGACCGATTACCACGTCGGTGGAGTGGTTGAGAT
TTATAACGCTGGACGGCTGGATAGCTGGATTTGTGAAGATATTCTGCGGT
AACGGAAGGCCGGAGGATGAGGTCGATGAGCCGGCGGACGTGAGATTGTG
CAACCTTTGGGCGGGACTCGCTCTTTGACGACCCTGAAGTGTCCACAGCG
AATTATCGGTTGTGGGGCTATTGTTTTCCTCGAACATGTCGACTGATAAC
T
BO17355.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32042-PD | 520 | PGRP-LA-RD | 1..519 | 537..19 | 2595 | 100 | Minus |
CG32042-PE | 1107 | PGRP-LA-RE | 1..519 | 537..19 | 2595 | 100 | Minus |
CG32042-PF | 900 | PGRP-LA-RF | 92..312 | 239..19 | 1105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RE | 1698 | CG32042-RE | 125..643 | 537..19 | 2595 | 100 | Minus |
PGRP-LA-RD | 1286 | CG32042-RD | 125..643 | 537..19 | 2595 | 100 | Minus |
PGRP-LA-RG | 945 | CG32042-RG | 70..290 | 239..19 | 1105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9334630..9334928 | 537..239 | 1495 | 100 | Minus |
3L | 28110227 | 3L | 9336710..9336932 | 241..19 | 1115 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:06:50 has no hits.
BO17355.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:51 Download gff for
BO17355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32042-PE | 1..519 | 19..537 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:46 Download gff for
BO17355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 118..647 | 15..547 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:37 Download gff for
BO17355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 118..647 | 15..547 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:37 Download gff for
BO17355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9334623..9334927 | 240..547 | 98 | -> | Minus |
3L | 9336712..9336938 | 14..239 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:46 Download gff for
BO17355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9327723..9328027 | 240..547 | 98 | -> | Minus |
arm_3L | 9329812..9330038 | 14..239 | 99 | | Minus |
BO17355.5prime Sequence
551 bp (551 high quality bases) assembled on 2006-10-13
> BO17355.5prime
GAAGTTATCAGTCGACATGTTCGAGGAAAACAATAGCCCCACAACCGATA
ATTCGCTGTGGACACTTCAGGGTCGTCAAAGAGCGAGTCCCGCCCAAAGG
TTGCACAATCTCACGTCCGCCGGCTCATCGACCTCATCCTCCGGCCTTCC
GTTACCGCAGAATATCTTCACAAATCCAGCTATCCAGCCGTCCAGCGTTA
TAAATCTCAACCACTCCACCGACGTGGTAATCGGTCCCATGACCCAATAC
CAGGGACCGGTATCCATATACTATATGGATTATATGGAGGCACACGCCAT
GCAAACGGCTGCAGGAATCAACAGCAACAATGCCAATGGTAATGGCAACG
CCAATCGAAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACC
ATCCTGCTGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGT
GCTCTACGTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAG
CCATCTATTTTGGCAACAACTACGACCACCAAACGGCAAGCTTTCTAGAC
C
BO17355.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32042-PD | 520 | PGRP-LA-RD | 1..519 | 17..535 | 2595 | 100 | Plus |
CG32042-PE | 1107 | PGRP-LA-RE | 1..519 | 17..535 | 2595 | 100 | Plus |
CG32042-PF | 900 | PGRP-LA-RF | 92..312 | 315..535 | 1105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RE | 1698 | CG32042-RE | 125..643 | 17..535 | 2595 | 100 | Plus |
PGRP-LA-RD | 1286 | CG32042-RD | 125..643 | 17..535 | 2595 | 100 | Plus |
PGRP-LA-RG | 945 | CG32042-RG | 70..290 | 315..535 | 1105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9334630..9334928 | 17..315 | 1495 | 100 | Plus |
3L | 28110227 | 3L | 9336710..9336932 | 313..535 | 1115 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:04:44 has no hits.
BO17355.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:52 Download gff for
BO17355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32042-PE | 1..519 | 17..535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:42 Download gff for
BO17355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 118..647 | 7..539 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:09 Download gff for
BO17355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 118..647 | 7..539 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:09 Download gff for
BO17355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9334623..9334927 | 7..314 | 98 | -> | Plus |
3L | 9336712..9336938 | 315..540 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:42 Download gff for
BO17355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9327723..9328027 | 7..314 | 98 | -> | Plus |
arm_3L | 9329812..9330038 | 315..540 | 99 | | Plus |
BO17355.complete Sequence
553 bp assembled on 2006-10-11
GenBank Submission: FJ634087
> BO17355.complete
GAAGTTATCAGTCGACATGTTCGAGGAAAACAATAGCCCCACAACCGATA
ATTCGCTGTGGACACTTCAGGGTCGTCAAAGAGCGAGTCCCGCCCAAAGG
TTGCACAATCTCACGTCCGCCGGCTCATCGACCTCATCCTCCGGCCTTCC
GTTACCGCAGAATATCTTCACAAATCCAGCTATCCAGCCGTCCAGCGTTA
TAAATCTCAACCACTCCACCGACGTGGTAATCGGTCCCATGACCCAATAC
CAGGGACCGGTATCCATATACTATATGGATTATATGGAGGCACACGCCAT
GCAAACGGCTGCAGGAATCAACAGCAACAATGCCAATGGTAATGGCAACG
CCAATCGAAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACC
ATCCTGCTGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGT
GCTCTACGTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAG
CCATCTATTTTGGCAACAACTACGACCACCAAACGGCAAGCTTTCTAGAC
CAT
BO17355.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RE | 1107 | CG32042-PE | 1..519 | 17..535 | 2595 | 100 | Plus |
PGRP-LA-RD | 522 | CG32042-PD | 1..519 | 17..535 | 2595 | 100 | Plus |
PGRP-LA-RF | 900 | CG32042-PF | 92..312 | 315..535 | 1105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RE | 1698 | CG32042-RE | 125..643 | 17..535 | 2595 | 100 | Plus |
PGRP-LA-RD | 1286 | CG32042-RD | 125..643 | 17..535 | 2595 | 100 | Plus |
PGRP-LA-RG | 945 | CG32042-RG | 70..290 | 315..535 | 1105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9334630..9334928 | 17..315 | 1495 | 100 | Plus |
3L | 28110227 | 3L | 9336710..9336932 | 313..535 | 1115 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:30:56 has no hits.
BO17355.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:15 Download gff for
BO17355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RE | 1..519 | 17..535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:21 Download gff for
BO17355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RE | 118..643 | 7..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:06 Download gff for
BO17355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 130..643 | 22..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:16 Download gff for
BO17355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RE | 118..643 | 7..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:50 Download gff for
BO17355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RD | 130..643 | 22..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:50 Download gff for
BO17355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9336712..9336932 | 315..537 | 99 | | Plus |
3L | 9334635..9334927 | 22..314 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:06 Download gff for
BO17355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9327735..9328027 | 22..314 | 100 | -> | Plus |
arm_3L | 9329812..9330032 | 315..537 | 99 | | Plus |
BO17355.pep Sequence
Translation from 16 to 553
> BO17355.pep
MFEENNSPTTDNSLWTLQGRQRASPAQRLHNLTSAGSSTSSSGLPLPQNI
FTNPAIQPSSVINLNHSTDVVIGPMTQYQGPVSIYYMDYMEAHAMQTAAG
INSNNANGNGNANRSRDKSPSRRVTRNTILLITLILLVLATGLIVLYVEL
NRPKPELPSNKAIYFGNNYDHQTASFLDH
BO17355.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-PD | 173 | CG32042-PD | 1..173 | 1..173 | 893 | 100 | Plus |
PGRP-LA-PE | 368 | CG32042-PE | 1..173 | 1..173 | 893 | 100 | Plus |
PGRP-LA-PF | 299 | CG32042-PF | 24..104 | 92..173 | 373 | 91.5 | Plus |