Clone BO17355 Report

Search the DGRC for BO17355

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LA-RD
Protein status:BO17355.pep: validated full length
Sequenced Size:553

Clone Sequence Records

BO17355.3prime Sequence

551 bp (551 high quality bases) assembled on 2006-10-13

> BO17355.3prime
ATGGTCTAGAAAGCTTGCCGTTTGGTGGTCGTAGTTGTTGCCAAAATAGA
TGGCTTTATTACTGGGCAACTCGGGCTTGGGTCGATTGAGTTCCACGTAG
AGCACAATCAATCCGGTGGCCAGGACCAACAGGATCAGCGTGATCAGCAG
GATGGTGTTCCGAGTGACCCGCCTAGATGGCGACTTATCACGACTTCGAT
TGGCGTTGCCATTACCATTGGCATTGTTGCTGTTGATTCCTGCAGCCGTT
TGCATGGCGTGTGCCTCCATATAATCCATATAGTATATGGATACCGGTCC
CTGGTATTGGGTCATGGGACCGATTACCACGTCGGTGGAGTGGTTGAGAT
TTATAACGCTGGACGGCTGGATAGCTGGATTTGTGAAGATATTCTGCGGT
AACGGAAGGCCGGAGGATGAGGTCGATGAGCCGGCGGACGTGAGATTGTG
CAACCTTTGGGCGGGACTCGCTCTTTGACGACCCTGAAGTGTCCACAGCG
AATTATCGGTTGTGGGGCTATTGTTTTCCTCGAACATGTCGACTGATAAC
T

BO17355.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32042-PD 520 PGRP-LA-RD 1..519 537..19 2595 100 Minus
CG32042-PE 1107 PGRP-LA-RE 1..519 537..19 2595 100 Minus
CG32042-PF 900 PGRP-LA-RF 92..312 239..19 1105 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RE 1698 CG32042-RE 125..643 537..19 2595 100 Minus
PGRP-LA-RD 1286 CG32042-RD 125..643 537..19 2595 100 Minus
PGRP-LA-RG 945 CG32042-RG 70..290 239..19 1105 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9334630..9334928 537..239 1495 100 Minus
3L 28110227 3L 9336710..9336932 241..19 1115 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:06:50 has no hits.

BO17355.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:51 Download gff for BO17355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32042-PE 1..519 19..537 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:46 Download gff for BO17355.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 118..647 15..547 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:37 Download gff for BO17355.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 118..647 15..547 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:37 Download gff for BO17355.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9334623..9334927 240..547 98 -> Minus
3L 9336712..9336938 14..239 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:46 Download gff for BO17355.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9327723..9328027 240..547 98 -> Minus
arm_3L 9329812..9330038 14..239 99   Minus

BO17355.5prime Sequence

551 bp (551 high quality bases) assembled on 2006-10-13

> BO17355.5prime
GAAGTTATCAGTCGACATGTTCGAGGAAAACAATAGCCCCACAACCGATA
ATTCGCTGTGGACACTTCAGGGTCGTCAAAGAGCGAGTCCCGCCCAAAGG
TTGCACAATCTCACGTCCGCCGGCTCATCGACCTCATCCTCCGGCCTTCC
GTTACCGCAGAATATCTTCACAAATCCAGCTATCCAGCCGTCCAGCGTTA
TAAATCTCAACCACTCCACCGACGTGGTAATCGGTCCCATGACCCAATAC
CAGGGACCGGTATCCATATACTATATGGATTATATGGAGGCACACGCCAT
GCAAACGGCTGCAGGAATCAACAGCAACAATGCCAATGGTAATGGCAACG
CCAATCGAAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACC
ATCCTGCTGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGT
GCTCTACGTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAG
CCATCTATTTTGGCAACAACTACGACCACCAAACGGCAAGCTTTCTAGAC
C

BO17355.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32042-PD 520 PGRP-LA-RD 1..519 17..535 2595 100 Plus
CG32042-PE 1107 PGRP-LA-RE 1..519 17..535 2595 100 Plus
CG32042-PF 900 PGRP-LA-RF 92..312 315..535 1105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RE 1698 CG32042-RE 125..643 17..535 2595 100 Plus
PGRP-LA-RD 1286 CG32042-RD 125..643 17..535 2595 100 Plus
PGRP-LA-RG 945 CG32042-RG 70..290 315..535 1105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9334630..9334928 17..315 1495 100 Plus
3L 28110227 3L 9336710..9336932 313..535 1115 100 Plus
Blast to na_te.dros performed on 2015-01-30 18:04:44 has no hits.

BO17355.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:52 Download gff for BO17355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32042-PE 1..519 17..535 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:42 Download gff for BO17355.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 118..647 7..539 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:09 Download gff for BO17355.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 118..647 7..539 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:09 Download gff for BO17355.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9334623..9334927 7..314 98 -> Plus
3L 9336712..9336938 315..540 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:42 Download gff for BO17355.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9327723..9328027 7..314 98 -> Plus
arm_3L 9329812..9330038 315..540 99   Plus

BO17355.complete Sequence

553 bp assembled on 2006-10-11

GenBank Submission: FJ634087

> BO17355.complete
GAAGTTATCAGTCGACATGTTCGAGGAAAACAATAGCCCCACAACCGATA
ATTCGCTGTGGACACTTCAGGGTCGTCAAAGAGCGAGTCCCGCCCAAAGG
TTGCACAATCTCACGTCCGCCGGCTCATCGACCTCATCCTCCGGCCTTCC
GTTACCGCAGAATATCTTCACAAATCCAGCTATCCAGCCGTCCAGCGTTA
TAAATCTCAACCACTCCACCGACGTGGTAATCGGTCCCATGACCCAATAC
CAGGGACCGGTATCCATATACTATATGGATTATATGGAGGCACACGCCAT
GCAAACGGCTGCAGGAATCAACAGCAACAATGCCAATGGTAATGGCAACG
CCAATCGAAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACC
ATCCTGCTGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGT
GCTCTACGTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAG
CCATCTATTTTGGCAACAACTACGACCACCAAACGGCAAGCTTTCTAGAC
CAT

BO17355.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RE 1107 CG32042-PE 1..519 17..535 2595 100 Plus
PGRP-LA-RD 522 CG32042-PD 1..519 17..535 2595 100 Plus
PGRP-LA-RF 900 CG32042-PF 92..312 315..535 1105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RE 1698 CG32042-RE 125..643 17..535 2595 100 Plus
PGRP-LA-RD 1286 CG32042-RD 125..643 17..535 2595 100 Plus
PGRP-LA-RG 945 CG32042-RG 70..290 315..535 1105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9334630..9334928 17..315 1495 100 Plus
3L 28110227 3L 9336710..9336932 313..535 1115 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:30:56 has no hits.

BO17355.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:15 Download gff for BO17355.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RE 1..519 17..535 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:21 Download gff for BO17355.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RE 118..643 7..535 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:06 Download gff for BO17355.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 130..643 22..537 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:16 Download gff for BO17355.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RE 118..643 7..535 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:50 Download gff for BO17355.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RD 130..643 22..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:50 Download gff for BO17355.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9336712..9336932 315..537 99   Plus
3L 9334635..9334927 22..314 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:06 Download gff for BO17355.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9327735..9328027 22..314 100 -> Plus
arm_3L 9329812..9330032 315..537 99   Plus

BO17355.pep Sequence

Translation from 16 to 553

> BO17355.pep
MFEENNSPTTDNSLWTLQGRQRASPAQRLHNLTSAGSSTSSSGLPLPQNI
FTNPAIQPSSVINLNHSTDVVIGPMTQYQGPVSIYYMDYMEAHAMQTAAG
INSNNANGNGNANRSRDKSPSRRVTRNTILLITLILLVLATGLIVLYVEL
NRPKPELPSNKAIYFGNNYDHQTASFLDH

BO17355.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-PD 173 CG32042-PD 1..173 1..173 893 100 Plus
PGRP-LA-PE 368 CG32042-PE 1..173 1..173 893 100 Plus
PGRP-LA-PF 299 CG32042-PF 24..104 92..173 373 91.5 Plus