Clone Sequence Records
BO17358.3prime Sequence
822 bp (746 high quality bases) assembled on 2006-10-13
> BO17358.3prime
ATGGTCTAGAAAGCTTGCCTCCTTCTTGGGCAACTCACTGTTCATGATGC
TGAGCCGGCGGATGTTGGGCTTGTCATAATCCTCCATCGAGATGCCGCGC
GACAGGCGCCGCGATCCGTTGGCCCCCTCCAGCGATCCGGAGCTAGCCGT
GGAGAAGGCGCGTCCGCGATCCACGCCTGGCATCACCACCGACGTGAGCA
GCCCCTGTCCCTTGCAGAACAGCAGAATGGATTGGGCCACCTTTCCGGGA
GCATCGGCGAGGACATCGCCAGCCCGCTCGATCTTCAGAATGGTGACCCT
CTCCTTCTCCACGTCGCGATGGAGCTTCTCGACCATGGACGCATAGGGGC
TGAGCATGCCCGTGATCAGGATGACATCTACCTTGCAGCCCTTGAGCGTA
AGGTCCTTGCGATTCATAAATGCTTTGACATAGAGACCGATGTTCTTGCT
GTTTAGGGATCGGTGAAGACGCTTCTGGTACTCGGCCACGATCTTCTCCT
TGTCCGGATTCTCGCCCACGATTTGCTCCATAACATGTCCGAATTTGTGG
TACATCAGAAAGCTCTCAGCCGACTGGGCCACCTCGTCGCTCTTCCAGCT
AATGAACTTGTTCTTGAAGGACTGCACTACACTGGCGGCGCTGCCAGTCG
CGTTGATCAGGATGAGGCCCAGCACCCGGCTGGGATGGGCCAGTCCGAAG
CGGGCCAGGACATTGGCTCCGGCACCCTCGCCTAGGCCGATCACGTACTT
TACGTGCAGGTAGTCCAGCACGGTGACCAGGTCCTCGCCCAGGGACTGGA
GCGAGGGGAACGGAAAGCCGTC
BO17358.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-PB | 1095 | CG2082-RB | 289..1092 | 822..19 | 3995 | 99.8 | Minus |
| CG2082-PA | 1098 | CG2082-RA | 589..1095 | 525..19 | 2535 | 100 | Minus |
| CG2082-PC | 1086 | CG2082-RC | 577..1083 | 525..19 | 2535 | 100 | Minus |
| CG2082-PA | 1098 | CG2082-RA | 301..588 | 822..535 | 1415 | 99.6 | Minus |
| CG2082-PC | 1086 | CG2082-RC | 289..576 | 822..535 | 1415 | 99.6 | Minus |
| CG2082-PD | 606 | CG2082-RD | 301..588 | 822..535 | 1415 | 99.6 | Minus |
| CG2082-PE | 312 | CG2082-RE | 46..294 | 783..535 | 1245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RK | 2290 | CG2082-RK | 616..1419 | 822..19 | 4005 | 99.9 | Minus |
| CG2082-RG | 1872 | CG2082-RG | 498..1301 | 822..19 | 4005 | 99.9 | Minus |
| CG2082-RB | 2280 | CG2082-RB | 606..1409 | 822..19 | 4005 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5760141..5760371 | 19..249 | 1155 | 100 | Plus |
| 3R | 32079331 | 3R | 5762172..5762387 | 607..822 | 1065 | 99.5 | Plus |
| 3R | 32079331 | 3R | 5760630..5760792 | 250..412 | 815 | 100 | Plus |
| 3R | 32079331 | 3R | 5760849..5760963 | 413..527 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 5761644..5761719 | 533..608 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:07:04 has no hits.
BO17358.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:54 Download gff for
BO17358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-PB | 289..1095 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:49 Download gff for
BO17358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 606..1415 | 11..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:20 Download gff for
BO17358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 606..1415 | 11..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:20 Download gff for
BO17358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5760135..5760371 | 11..249 | 98 | <- | Plus |
| 3R | 5760630..5760792 | 250..412 | 100 | <- | Plus |
| 3R | 5760849..5760961 | 413..525 | 100 | <- | Plus |
| 3R | 5761636..5761717 | 526..606 | 95 | <- | Plus |
| 3R | 5762172..5762387 | 607..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:49 Download gff for
BO17358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1585857..1586093 | 11..249 | 98 | <- | Plus |
| arm_3R | 1586352..1586514 | 250..412 | 100 | <- | Plus |
| arm_3R | 1586571..1586683 | 413..525 | 100 | <- | Plus |
| arm_3R | 1587358..1587439 | 526..606 | 95 | <- | Plus |
| arm_3R | 1587894..1588109 | 607..822 | 99 | | Plus |
BO17358.5prime Sequence
840 bp (761 high quality bases) assembled on 2006-10-13
> BO17358.5prime
GAAGTTATCAGTCGACATGTCCATTGCCGATAAACGCGCCTCCTTCGCGC
GCCGCGCCGAATCCCTGGTGGAGCGGAAATACAATATCAGCACAGAGAAA
TGCGGGGATCTGACGGTCATAGTGCAGGGCGACCTGTCACAGCAGGAGAA
ACGCGCCGTGTTCATAACGGTTCACGACCTGGGCTGCAACCACAACTCAT
TCCAGGAGTTCGTGAGCAGTCCCTGCATGACGGAGATCAAGGAGCGCTCC
TGCTTCATCCACGTGGACGTGCCGGGGCACGCGGACAACGCGGAGGCCCT
GGCTGACGGCTTTCCGTTTCCCTCGCTCCAGTCCCTGGGCGAGGACCTGG
TCACCGTGCTGGACTACCTGCACGTAAAGTACGTGATCGGCCTAGGCGAG
GGTGCCGGAGCCAATGTCCTGGCCCGCTTCGGACTGGCCCATCCCAGCCG
GGTGCTGGGCCTCATCCTGATCAACGCGACTGGCAGCGCCGCCAGTGTAG
TGCAGTCCTTCAAGAACAAGTTCATTAGCTGGAAGAGCGACGAGGTGGCC
CAGTCGGCTGAGAGCTTTCTGATGTACCACAAATTCGGACATGTTATGGA
GCAAATCGTGGGCGAGAATCCGGACAAGGAGAAGATCGTGGCCGAGTACC
AGAAGCGTCTTCACCGATCCCTAAACAGCAAGAACATCGGTCTCTATGTC
AAAGCATTTATGAATCGCAAGGACCTTACGCTCAAGGGCTGCAAGGTAGA
TGTCATCCTGATCACGGGCATGCTCAGCCCCTATGCGTCCATGGTCGAGA
AGCTCCATCGCGACGTGGAGAAGGAGAGGGTCACCATTCT
BO17358.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-PB | 1095 | CG2082-RB | 1..824 | 17..840 | 4120 | 100 | Plus |
| CG2082-PC | 1086 | CG2082-RC | 1..576 | 17..592 | 2880 | 100 | Plus |
| CG2082-PA | 1098 | CG2082-RA | 73..588 | 77..592 | 2580 | 100 | Plus |
| CG2082-PD | 606 | CG2082-RD | 73..588 | 77..592 | 2580 | 100 | Plus |
| CG2082-PE | 312 | CG2082-RE | 46..294 | 344..592 | 1245 | 100 | Plus |
| CG2082-PC | 1086 | CG2082-RC | 577..815 | 602..840 | 1195 | 100 | Plus |
| CG2082-PA | 1098 | CG2082-RA | 589..827 | 602..840 | 1195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RK | 2290 | CG2082-RK | 327..1151 | 16..840 | 4125 | 100 | Plus |
| CG2082-RB | 2280 | CG2082-RB | 317..1141 | 16..840 | 4125 | 100 | Plus |
| CG2082-RL | 2277 | CG2082-RL | 317..1138 | 16..840 | 4015 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5762172..5762500 | 520..192 | 1645 | 100 | Minus |
| 3R | 32079331 | 3R | 5760667..5760792 | 840..715 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 5760849..5760963 | 714..600 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 5761644..5761719 | 594..519 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 5762557..5762622 | 191..126 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 5776952..5777012 | 76..16 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 5762704..5762756 | 128..76 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:54:49 has no hits.
BO17358.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:54 Download gff for
BO17358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-PB | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:52 Download gff for
BO17358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 308..1141 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:41 Download gff for
BO17358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 308..1141 | 9..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:41 Download gff for
BO17358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5776952..5777021 | 9..76 | 95 | | Minus |
| 3R | 5760667..5760792 | 715..840 | 100 | <- | Minus |
| 3R | 5760849..5760961 | 602..714 | 100 | <- | Minus |
| 3R | 5761636..5761717 | 521..601 | 95 | <- | Minus |
| 3R | 5762172..5762500 | 192..520 | 100 | <- | Minus |
| 3R | 5762557..5762620 | 128..191 | 100 | <- | Minus |
| 3R | 5762705..5762755 | 77..127 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:52 Download gff for
BO17358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1586389..1586514 | 715..840 | 100 | <- | Minus |
| arm_3R | 1586571..1586683 | 602..714 | 100 | <- | Minus |
| arm_3R | 1587358..1587439 | 521..601 | 95 | <- | Minus |
| arm_3R | 1587894..1588222 | 192..520 | 100 | <- | Minus |
| arm_3R | 1588279..1588342 | 128..191 | 100 | <- | Minus |
| arm_3R | 1588427..1588477 | 77..127 | 100 | <- | Minus |
| arm_3R | 1602674..1602743 | 9..76 | 95 | | Minus |
BO17358.complete Sequence
1126 bp assembled on 2006-10-11
GenBank Submission: FJ634088
> BO17358.complete
GAAGTTATCAGTCGACATGTCCATTGCCGATAAACGCGCCTCCTTCGCGC
GCCGCGCCGAATCCCTGGTGGAGCGGAAATACAATATCAGCACAGAGAAA
TGCGGGGATCTGACGGTCATAGTGCAGGGCGACCTGTCACAGCAGGAGAA
ACGCGCCGTGTTCATAACGGTTCACGACCTGGGCTGCAACCACAACTCAT
TCCAGGAGTTCGTGAGCAGTCCCTGCATGACGGAGATCAAGGAGCGCTCC
TGCTTCATCCACGTGGACGTGCCGGGGCACGCGGACAACGCGGAGGCCCT
GGCTGACGGCTTTCCGTTTCCCTCGCTCCAGTCCCTGGGCGAGGACCTGG
TCACCGTGCTGGACTACCTGCACGTAAAGTACGTGATCGGCCTAGGCGAG
GGTGCCGGAGCCAATGTCCTGGCCCGCTTCGGACTGGCCCATCCCAGCCG
GGTGCTGGGCCTCATCCTGATCAACGCGACTGGCAGCGCCGCCAGTGTAG
TGCAGTCCTTCAAGAACAAGTTCATTAGCTGGAAGAGCGACGAGGTGGCC
CAGTCGGCTGAGAGCTTTCTGATGTACCACAAATTCGGACATGTTATGGA
GCAAATCGTGGGCGAGAATCCGGACAAGGAGAAGATCGTGGCCGAGTACC
AGAAGCGTCTTCACCGATCCCTAAACAGCAAGAACATCGGTCTCTATGTC
AAAGCATTTATGAATCGCAAGGACCTTACGCTCAAGGGCTGCAAGGTAGA
TGTCATCCTGATCACGGGCATGCTCAGCCCCTATGCGTCCATGGTCGAGA
AGCTCCATCGCGACGTGGAGAAGGAGAGGGTCACCATTCTGAAGATCGAG
CGGGCTGGCGATGTCCTCGCCGATGCTCCCGGAAAGGTGGCCCAATCCAT
TCTGCTGTTCTGCAAGGGACAGGGGCTGCTCACGTCGGTGGTGATGCCAG
GCGTGGATCGCGGACGCGCCTTCTCCACGGCTAGCTCCGGATCGCTGGAG
GGGGCCAACGGATCGCGGCGCCTGTCGCGCGGCATCTCGATGGAGGATTA
TGACAAGCCCAACATCCGCCGGCTCAGCATCATGAACAGTGAGTTGCCCA
AGAAGGAGGCAAGCTTTCTAGACCAT
BO17358.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:22:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RK | 1095 | CG2082-PK | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| CG2082-RB | 1095 | CG2082-PB | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| CG2082-RL | 1092 | CG2082-PL | 1..1089 | 17..1108 | 5320 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-RK | 2290 | CG2082-RK | 327..1419 | 16..1108 | 5465 | 100 | Plus |
| CG2082-RB | 2280 | CG2082-RB | 317..1409 | 16..1108 | 5465 | 100 | Plus |
| CG2082-RL | 2277 | CG2082-RL | 317..1406 | 16..1108 | 5325 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5762172..5762500 | 520..192 | 1645 | 100 | Minus |
| 3R | 32079331 | 3R | 5760141..5760371 | 1108..878 | 1155 | 100 | Minus |
| 3R | 32079331 | 3R | 5760630..5760792 | 877..715 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 5760849..5760963 | 714..600 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 5761644..5761719 | 594..519 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 5762557..5762622 | 191..126 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 5776952..5777012 | 76..16 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 5762704..5762756 | 128..76 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:21:59 has no hits.
BO17358.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:18 Download gff for
BO17358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 1..1095 | 17..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:48 Download gff for
BO17358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 320..1411 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:10 Download gff for
BO17358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 318..1409 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:18 Download gff for
BO17358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 310..1417 | 9..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:16:27 Download gff for
BO17358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2082-RB | 318..1409 | 17..1110 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:16:27 Download gff for
BO17358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5760630..5760792 | 715..877 | 100 | <- | Minus |
| 3R | 5760849..5760961 | 602..714 | 100 | <- | Minus |
| 3R | 5761636..5761717 | 521..601 | 95 | <- | Minus |
| 3R | 5762172..5762500 | 192..520 | 100 | <- | Minus |
| 3R | 5762557..5762620 | 128..191 | 100 | <- | Minus |
| 3R | 5762705..5762755 | 77..127 | 100 | <- | Minus |
| 3R | 5776952..5777011 | 17..76 | 100 | | Minus |
| 3R | 5760139..5760371 | 878..1110 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:10 Download gff for
BO17358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1586571..1586683 | 602..714 | 100 | <- | Minus |
| arm_3R | 1587358..1587439 | 521..601 | 95 | <- | Minus |
| arm_3R | 1587894..1588222 | 192..520 | 100 | <- | Minus |
| arm_3R | 1588279..1588342 | 128..191 | 100 | <- | Minus |
| arm_3R | 1588427..1588477 | 77..127 | 100 | <- | Minus |
| arm_3R | 1602674..1602733 | 17..76 | 100 | | Minus |
| arm_3R | 1585861..1586093 | 878..1110 | 99 | <- | Minus |
| arm_3R | 1586352..1586514 | 715..877 | 100 | <- | Minus |
BO17358.pep Sequence
Translation from 16 to 1126
> BO17358.pep
MSIADKRASFARRAESLVERKYNISTEKCGDLTVIVQGDLSQQEKRAVFI
TVHDLGCNHNSFQEFVSSPCMTEIKERSCFIHVDVPGHADNAEALADGFP
FPSLQSLGEDLVTVLDYLHVKYVIGLGEGAGANVLARFGLAHPSRVLGLI
LINATGSAASVVQSFKNKFISWKSDEVAQSAESFLMYHKFGHVMEQIVGE
NPDKEKIVAEYQKRLHRSLNSKNIGLYVKAFMNRKDLTLKGCKVDVILIT
GMLSPYASMVEKLHRDVEKERVTILKIERAGDVLADAPGKVAQSILLFCK
GQGLLTSVVMPGVDRGRAFSTASSGSLEGANGSRRLSRGISMEDYDKPNI
RRLSIMNSELPKKEASFLDH
BO17358.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2082-PK | 364 | CG2082-PK | 1..364 | 1..364 | 1845 | 100 | Plus |
| CG2082-PB | 364 | CG2082-PB | 1..364 | 1..364 | 1845 | 100 | Plus |
| CG2082-PJ | 361 | CG2082-PJ | 1..361 | 1..364 | 1817 | 99.2 | Plus |
| CG2082-PC | 361 | CG2082-PC | 1..361 | 1..364 | 1817 | 99.2 | Plus |
| CG2082-PL | 363 | CG2082-PL | 1..363 | 1..364 | 1815 | 99.2 | Plus |
