Clone BO17360 Report

Search the DGRC for BO17360

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG12822-RB
Protein status:BO17360.pep: validated full length
Sequenced Size:1216

Clone Sequence Records

BO17360.3prime Sequence

781 bp (673 high quality bases) assembled on 2006-10-13

> BO17360.3prime
ATGGTCTAGAAAGCTTGCGGCGCTGCGCAGGTCGCCGTCCAGGGCGGTAA
CCTGGACATTCTCGTTGCGCCGGACCTGAACCACAGTCACCGTGCCGGCC
TTGTCATCAAATTTGCACGTCACCGTGACCTCCCGCAGCTGGAAGGTAAA
TATTTGCGAGCCATATTTTGTGCGCAAGTAAACGGAGCGCGGATCCGCCT
CCAGAATGTCCACGATGCACTGCTTCTCCACCTGCAGCTCCTTTAACTGC
GCCTCGGCATGCTCGTTAAAGGTCACGCTAAGTCTATTGCTGGCCACCAC
CCAGTTGGGCACTCGCACGGCGCTGGGTGGCGGCAGAATAGCGTCAGCTC
CAATGCCCGCGTTCCCGCTGTAGCCAGCTGCTCCATACAGTTCCAGGTCC
GATTCCTCTCCGTCAGGCTCCTGTCTGGAGTCGTAGAAGTCCAGGCTGCT
CTCATGCGGTCCAACAGAGGTTCTTCCTGAGTCAACGCTCAAGGATGGTG
CATCGTAGTGTGGAATGTAGGGCTTAATGTCCAACACGGGTGTGCCGTCT
ACCATGTCCGTACCAAAGAAACTAATGGTGGCGTTCTCGATCTTCTCAAT
CTCCACCAACGAGAGACCAATGGGACACGGGCGGTGTGGAGATCGTGTGG
AAAACACACCCACCCGCTCCCCACCAAGACGGGGAGGCGCCACCTTGGCC
TTGGGGTGGGAATTGTTGCGGTGAAAATGATAGATGAGCCACAGATGGGA
AAAGTCCTCTAGTCCCTCCAAGGAGTGCTCC

BO17360.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-PB 1185 CG12822-RB 420..1182 781..19 3815 100 Minus
CG12822-PA 1239 CG12822-RA 776..1236 479..19 2305 100 Minus
CG12822-PA 1239 CG12822-RA 420..725 781..476 1530 100 Minus
CG18853-PA 993 CG18853-RA 420..508 781..693 445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-RB 1468 CG12822-RB 553..1315 781..19 3815 100 Minus
CG12822-RA 1522 CG12822-RA 909..1369 479..19 2305 100 Minus
CG12822-RA 1522 CG12822-RA 553..858 781..476 1530 100 Minus
CG18853-RA 1157 CG18853-RA 552..640 781..693 445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7833228..7833688 479..19 2305 100 Minus
2R 25286936 2R 7832872..7833177 781..476 1530 100 Minus
2R 25286936 2R 7829762..7829850 781..693 445 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:21:10 has no hits.

BO17360.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:55 Download gff for BO17360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-PB 420..1185 15..781 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:16 Download gff for BO17360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 553..1321 11..781 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:13 Download gff for BO17360.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 553..1321 11..781 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:13 Download gff for BO17360.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7832872..7833176 477..781 100 -> Minus
2R 7833231..7833694 11..476 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:16 Download gff for BO17360.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3720377..3720681 477..781 100 -> Minus
arm_2R 3720736..3721199 11..476 99   Minus

BO17360.5prime Sequence

828 bp (697 high quality bases) assembled on 2006-10-13

> BO17360.5prime
GAAGTTATCAGTCGACATGCACGAGGATGATCTGAAGAGTCAGTTGACCA
TCGCGCGGAACGAGATCAACAATCTCAGGCAGCAAGTGCGCAACCTGCAG
CATGTGCAGCGCAAGGACATTGAGACGATAACCCGCCTGCTGCAGGACTT
CCGCTGCGAGGGGTGTGCGAACAACAACAAAAGCGCCAAGGACAAGGTCG
CCGGCGAGAAGCAGGAGCACCAGCACCAACAGCAGACGCAGGACCAGCAG
ACGGGCCAAGGTCAGAGCAATTATACCAATGGTGGGCACTGCTTGGGAGA
GGACTACGCACACTTTCGGCCCATAGGAGTGATCCGGACAGCATTCCCAG
AGAAGCGGGCCGTGCCGAGGCAGTCAATTGTGGGCAGTCGCCTGCGGGGT
ATCATCCAACTGAACGACGGTGTGTTCACCAATCCGGAGCACTCCTTGGA
GGGACTAGAGGACTTTTCCCATCTGTGGCTCATCTATCATTTTCACCGCA
ACAATTCCCACCCCAAGGCCAAGGTGGCGCCTCCCCGTCTTGGTGGGGAG
CGGGTGGGTGTGTTTTCCACACGATCTCCACACCGCCCGTGTCCCATTGG
TCTCTCGTTGGTGGAGATTGAGAAGATCGAGAACGCCACCATTAGTTTCT
TTGGTACGGACATGGTAGACGGCACACCCGTGTTGGACATTAAGCCCTAC
ATTCCACACTACGATGCACCATCCTTGAGCGTTGACTCAGGAAGAACCTC
TGTTGGACCGCATGAGAGCAGCCTGGACTTCTACGACTCCAGACAGGAGC
CTGACGGAAAGGAATCGGACCTGGAACT

BO17360.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-PB 1185 CG12822-RB 1..812 17..828 4035 99.8 Plus
CG12822-PA 1239 CG12822-RA 1..725 17..741 3625 100 Plus
CG18853-PA 993 CG18853-RA 1..508 17..524 2540 100 Plus
CG12822-PA 1239 CG12822-RA 776..866 738..828 430 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-RB 1468 CG12822-RB 134..945 17..828 4045 99.9 Plus
CG12822-RA 1522 CG12822-RA 134..858 17..741 3625 100 Plus
CG18853-RA 1157 CG18853-RA 133..640 17..524 2540 100 Plus
CG12822-RA 1522 CG12822-RA 909..999 738..828 440 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7832700..7833177 264..741 2390 100 Plus
2R 25286936 2R 7829590..7829850 264..524 1305 100 Plus
2R 25286936 2R 7829343..7829532 76..265 950 100 Plus
2R 25286936 2R 7832453..7832642 76..265 950 100 Plus
2R 25286936 2R 7833228..7833318 738..828 440 98.9 Plus
2R 25286936 2R 7829194..7829256 17..79 315 100 Plus
2R 25286936 2R 7832304..7832366 17..79 315 100 Plus
Blast to na_te.dros performed 2015-01-31 10:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6712..6891 66..249 164 59.3 Plus

BO17360.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:56 Download gff for BO17360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-PB 1..812 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:18 Download gff for BO17360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 126..945 9..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:14 Download gff for BO17360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 126..945 9..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:14 Download gff for BO17360.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7832296..7832365 9..78 95 -> Plus
2R 7832456..7832642 79..265 100 -> Plus
2R 7832702..7833176 266..740 100 -> Plus
2R 7833231..7833318 741..828 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:18 Download gff for BO17360.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3719961..3720147 79..265 100 -> Plus
arm_2R 3719801..3719870 9..78 95 -> Plus
arm_2R 3720207..3720681 266..740 100 -> Plus
arm_2R 3720736..3720823 741..828 98   Plus

BO17360.complete Sequence

1216 bp assembled on 2006-10-11

GenBank Submission: FJ634089

> BO17360.complete
GAAGTTATCAGTCGACATGCACGAGGATGATCTGAAGAGTCAGTTGACCA
TCGCGCGGAACGAGATCAACAATCTCAGGCAGCAAGTGCGCAACCTGCAG
CATGTGCAGCGCAAGGACATTGAGACGATAACCCGCCTGCTGCAGGACTT
CCGCTGCGAGGGGTGTGCGAACAACAACAAAAGCGCCAAGGACAAGGTCG
CCGGCGAGAAGCAGGAGCACCAGCACCAACAGCAGACGCAGGACCAGCAG
ACGGGCCAAGGTCAGAGCAATTATACCAATGGTGGGCACTGCTTGGGAGA
GGACTACGCACACTTTCGGCCCATAGGAGTGATCCGGACAGCATTCCCAG
AGAAGCGGGCCGTGCCGAGGCAGTCAATTGTGGGCAGTCGCCTGCGGGGT
ATCATCCAACTGAACGACGGTGTGTTCACCAATCCGGAGCACTCCTTGGA
GGGACTAGAGGACTTTTCCCATCTGTGGCTCATCTATCATTTTCACCGCA
ACAATTCCCACCCCAAGGCCAAGGTGGCGCCTCCCCGTCTTGGTGGGGAG
CGGGTGGGTGTGTTTTCCACACGATCTCCACACCGCCCGTGTCCCATTGG
TCTCTCGTTGGTGGAGATTGAGAAGATCGAGAACGCCACCATTAGTTTCT
TTGGTACGGACATGGTAGACGGCACACCCGTGTTGGACATTAAGCCCTAC
ATTCCACACTACGATGCACCATCCTTGAGCGTTGACTCAGGAAGAACCTC
TGTTGGACCGCATGAGAGCAGCCTGGACTTCTACGACTCCAGACAGGAGC
CTGACGGAGAGGAATCGGACCTGGAACTGTATGGAGCAGCTGGCTACAGC
GGGAACGCGGGCATTGGAGCTGACGCTATTCTGCCGCCACCCAGCGCCGT
GCGAGTGCCCAACTGGGTGGTGGCCAGCAATAGACTTAGCGTGACCTTTA
ACGAGCATGCCGAGGCGCAGTTAAAGGAGCTGCAGGTGGAGAAGCAGTGC
ATCGTGGACATTCTGGAGGCGGATCCGCGCTCCGTTTACTTGCGCACAAA
ATATGGCTCGCAAATATTTACCTTCCAGCTGCGGGAGGTCACGGTGACGT
GCAAATTTGATGACAAGGCCGGCACGGTGACTGTGGTTCAGGTCCGGCGC
AACGAGAATGTCCAGGTTACCGCCCTGGACGGCGACCTGCGCAGCGCCGC
AAGCTTTCTAGACCAT

BO17360.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-RB 1185 CG12822-PB 1..1182 17..1198 5910 100 Plus
CG12822-RA 1239 CG12822-PA 1..725 17..741 3625 100 Plus
CG18853-RA 993 CG18853-PA 1..508 17..524 2540 100 Plus
CG12822-RA 1239 CG12822-PA 776..1236 738..1198 2305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-RB 1468 CG12822-RB 134..1315 17..1198 5910 100 Plus
CG12822-RA 1522 CG12822-RA 134..858 17..741 3625 100 Plus
CG18853-RA 1157 CG18853-RA 133..640 17..524 2540 100 Plus
CG12822-RA 1522 CG12822-RA 909..1369 738..1198 2305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7832700..7833177 264..741 2390 100 Plus
2R 25286936 2R 7833228..7833688 738..1198 2305 100 Plus
2R 25286936 2R 7829590..7829850 264..524 1305 100 Plus
2R 25286936 2R 7829343..7829532 76..265 950 100 Plus
2R 25286936 2R 7832453..7832642 76..265 950 100 Plus
2R 25286936 2R 7829194..7829256 17..79 315 100 Plus
2R 25286936 2R 7832304..7832366 17..79 315 100 Plus
Blast to na_te.dros performed 2014-11-27 23:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6712..6891 66..249 164 59.3 Plus

BO17360.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:19 Download gff for BO17360.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 1..1185 17..1202 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:25 Download gff for BO17360.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 130..1325 9..1206 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:38 Download gff for BO17360.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 134..1315 17..1200 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:19 Download gff for BO17360.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 130..1325 9..1206 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:30 Download gff for BO17360.complete
Subject Subject Range Query Range Percent Splice Strand
CG12822-RB 134..1315 17..1200 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:30 Download gff for BO17360.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7832304..7832365 17..78 100 -> Plus
2R 7832456..7832642 79..265 100 -> Plus
2R 7832702..7833176 266..740 100 -> Plus
2R 7833231..7833688 741..1200 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:38 Download gff for BO17360.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3719809..3719870 17..78 100 -> Plus
arm_2R 3719961..3720147 79..265 100 -> Plus
arm_2R 3720207..3720681 266..740 100 -> Plus
arm_2R 3720736..3721193 741..1200 99   Plus

BO17360.pep Sequence

Translation from 16 to 1216

> BO17360.pep
MHEDDLKSQLTIARNEINNLRQQVRNLQHVQRKDIETITRLLQDFRCEGC
ANNNKSAKDKVAGEKQEHQHQQQTQDQQTGQGQSNYTNGGHCLGEDYAHF
RPIGVIRTAFPEKRAVPRQSIVGSRLRGIIQLNDGVFTNPEHSLEGLEDF
SHLWLIYHFHRNNSHPKAKVAPPRLGGERVGVFSTRSPHRPCPIGLSLVE
IEKIENATISFFGTDMVDGTPVLDIKPYIPHYDAPSLSVDSGRTSVGPHE
SSLDFYDSRQEPDGEESDLELYGAAGYSGNAGIGADAILPPPSAVRVPNW
VVASNRLSVTFNEHAEAQLKELQVEKQCIVDILEADPRSVYLRTKYGSQI
FTFQLREVTVTCKFDDKAGTVTVVQVRRNENVQVTALDGDLRSAASFLDH

BO17360.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12822-PB 394 CG12822-PB 1..394 1..394 2068 100 Plus
CG12822-PA 412 CG12822-PA 1..412 1..394 2039 95.6 Plus
CG18853-PA 330 CG18853-PA 1..213 1..203 907 83.8 Plus