Clone Sequence Records
BO17360.3prime Sequence
781 bp (673 high quality bases) assembled on 2006-10-13
> BO17360.3prime
ATGGTCTAGAAAGCTTGCGGCGCTGCGCAGGTCGCCGTCCAGGGCGGTAA
CCTGGACATTCTCGTTGCGCCGGACCTGAACCACAGTCACCGTGCCGGCC
TTGTCATCAAATTTGCACGTCACCGTGACCTCCCGCAGCTGGAAGGTAAA
TATTTGCGAGCCATATTTTGTGCGCAAGTAAACGGAGCGCGGATCCGCCT
CCAGAATGTCCACGATGCACTGCTTCTCCACCTGCAGCTCCTTTAACTGC
GCCTCGGCATGCTCGTTAAAGGTCACGCTAAGTCTATTGCTGGCCACCAC
CCAGTTGGGCACTCGCACGGCGCTGGGTGGCGGCAGAATAGCGTCAGCTC
CAATGCCCGCGTTCCCGCTGTAGCCAGCTGCTCCATACAGTTCCAGGTCC
GATTCCTCTCCGTCAGGCTCCTGTCTGGAGTCGTAGAAGTCCAGGCTGCT
CTCATGCGGTCCAACAGAGGTTCTTCCTGAGTCAACGCTCAAGGATGGTG
CATCGTAGTGTGGAATGTAGGGCTTAATGTCCAACACGGGTGTGCCGTCT
ACCATGTCCGTACCAAAGAAACTAATGGTGGCGTTCTCGATCTTCTCAAT
CTCCACCAACGAGAGACCAATGGGACACGGGCGGTGTGGAGATCGTGTGG
AAAACACACCCACCCGCTCCCCACCAAGACGGGGAGGCGCCACCTTGGCC
TTGGGGTGGGAATTGTTGCGGTGAAAATGATAGATGAGCCACAGATGGGA
AAAGTCCTCTAGTCCCTCCAAGGAGTGCTCC
BO17360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-PB | 1185 | CG12822-RB | 420..1182 | 781..19 | 3815 | 100 | Minus |
CG12822-PA | 1239 | CG12822-RA | 776..1236 | 479..19 | 2305 | 100 | Minus |
CG12822-PA | 1239 | CG12822-RA | 420..725 | 781..476 | 1530 | 100 | Minus |
CG18853-PA | 993 | CG18853-RA | 420..508 | 781..693 | 445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-RB | 1468 | CG12822-RB | 553..1315 | 781..19 | 3815 | 100 | Minus |
CG12822-RA | 1522 | CG12822-RA | 909..1369 | 479..19 | 2305 | 100 | Minus |
CG12822-RA | 1522 | CG12822-RA | 553..858 | 781..476 | 1530 | 100 | Minus |
CG18853-RA | 1157 | CG18853-RA | 552..640 | 781..693 | 445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7833228..7833688 | 479..19 | 2305 | 100 | Minus |
2R | 25286936 | 2R | 7832872..7833177 | 781..476 | 1530 | 100 | Minus |
2R | 25286936 | 2R | 7829762..7829850 | 781..693 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:21:10 has no hits.
BO17360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:55 Download gff for
BO17360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-PB | 420..1185 | 15..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:16 Download gff for
BO17360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 553..1321 | 11..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:13 Download gff for
BO17360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 553..1321 | 11..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:13 Download gff for
BO17360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7832872..7833176 | 477..781 | 100 | -> | Minus |
2R | 7833231..7833694 | 11..476 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:16 Download gff for
BO17360.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3720377..3720681 | 477..781 | 100 | -> | Minus |
arm_2R | 3720736..3721199 | 11..476 | 99 | | Minus |
BO17360.5prime Sequence
828 bp (697 high quality bases) assembled on 2006-10-13
> BO17360.5prime
GAAGTTATCAGTCGACATGCACGAGGATGATCTGAAGAGTCAGTTGACCA
TCGCGCGGAACGAGATCAACAATCTCAGGCAGCAAGTGCGCAACCTGCAG
CATGTGCAGCGCAAGGACATTGAGACGATAACCCGCCTGCTGCAGGACTT
CCGCTGCGAGGGGTGTGCGAACAACAACAAAAGCGCCAAGGACAAGGTCG
CCGGCGAGAAGCAGGAGCACCAGCACCAACAGCAGACGCAGGACCAGCAG
ACGGGCCAAGGTCAGAGCAATTATACCAATGGTGGGCACTGCTTGGGAGA
GGACTACGCACACTTTCGGCCCATAGGAGTGATCCGGACAGCATTCCCAG
AGAAGCGGGCCGTGCCGAGGCAGTCAATTGTGGGCAGTCGCCTGCGGGGT
ATCATCCAACTGAACGACGGTGTGTTCACCAATCCGGAGCACTCCTTGGA
GGGACTAGAGGACTTTTCCCATCTGTGGCTCATCTATCATTTTCACCGCA
ACAATTCCCACCCCAAGGCCAAGGTGGCGCCTCCCCGTCTTGGTGGGGAG
CGGGTGGGTGTGTTTTCCACACGATCTCCACACCGCCCGTGTCCCATTGG
TCTCTCGTTGGTGGAGATTGAGAAGATCGAGAACGCCACCATTAGTTTCT
TTGGTACGGACATGGTAGACGGCACACCCGTGTTGGACATTAAGCCCTAC
ATTCCACACTACGATGCACCATCCTTGAGCGTTGACTCAGGAAGAACCTC
TGTTGGACCGCATGAGAGCAGCCTGGACTTCTACGACTCCAGACAGGAGC
CTGACGGAAAGGAATCGGACCTGGAACT
BO17360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-PB | 1185 | CG12822-RB | 1..812 | 17..828 | 4035 | 99.8 | Plus |
CG12822-PA | 1239 | CG12822-RA | 1..725 | 17..741 | 3625 | 100 | Plus |
CG18853-PA | 993 | CG18853-RA | 1..508 | 17..524 | 2540 | 100 | Plus |
CG12822-PA | 1239 | CG12822-RA | 776..866 | 738..828 | 430 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-RB | 1468 | CG12822-RB | 134..945 | 17..828 | 4045 | 99.9 | Plus |
CG12822-RA | 1522 | CG12822-RA | 134..858 | 17..741 | 3625 | 100 | Plus |
CG18853-RA | 1157 | CG18853-RA | 133..640 | 17..524 | 2540 | 100 | Plus |
CG12822-RA | 1522 | CG12822-RA | 909..999 | 738..828 | 440 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7832700..7833177 | 264..741 | 2390 | 100 | Plus |
2R | 25286936 | 2R | 7829590..7829850 | 264..524 | 1305 | 100 | Plus |
2R | 25286936 | 2R | 7829343..7829532 | 76..265 | 950 | 100 | Plus |
2R | 25286936 | 2R | 7832453..7832642 | 76..265 | 950 | 100 | Plus |
2R | 25286936 | 2R | 7833228..7833318 | 738..828 | 440 | 98.9 | Plus |
2R | 25286936 | 2R | 7829194..7829256 | 17..79 | 315 | 100 | Plus |
2R | 25286936 | 2R | 7832304..7832366 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed 2015-01-31 10:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6891 | 66..249 | 164 | 59.3 | Plus |
BO17360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:56 Download gff for
BO17360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-PB | 1..812 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:18 Download gff for
BO17360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 126..945 | 9..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:14 Download gff for
BO17360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 126..945 | 9..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:14 Download gff for
BO17360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7832296..7832365 | 9..78 | 95 | -> | Plus |
2R | 7832456..7832642 | 79..265 | 100 | -> | Plus |
2R | 7832702..7833176 | 266..740 | 100 | -> | Plus |
2R | 7833231..7833318 | 741..828 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:18 Download gff for
BO17360.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3719961..3720147 | 79..265 | 100 | -> | Plus |
arm_2R | 3719801..3719870 | 9..78 | 95 | -> | Plus |
arm_2R | 3720207..3720681 | 266..740 | 100 | -> | Plus |
arm_2R | 3720736..3720823 | 741..828 | 98 | | Plus |
BO17360.complete Sequence
1216 bp assembled on 2006-10-11
GenBank Submission: FJ634089
> BO17360.complete
GAAGTTATCAGTCGACATGCACGAGGATGATCTGAAGAGTCAGTTGACCA
TCGCGCGGAACGAGATCAACAATCTCAGGCAGCAAGTGCGCAACCTGCAG
CATGTGCAGCGCAAGGACATTGAGACGATAACCCGCCTGCTGCAGGACTT
CCGCTGCGAGGGGTGTGCGAACAACAACAAAAGCGCCAAGGACAAGGTCG
CCGGCGAGAAGCAGGAGCACCAGCACCAACAGCAGACGCAGGACCAGCAG
ACGGGCCAAGGTCAGAGCAATTATACCAATGGTGGGCACTGCTTGGGAGA
GGACTACGCACACTTTCGGCCCATAGGAGTGATCCGGACAGCATTCCCAG
AGAAGCGGGCCGTGCCGAGGCAGTCAATTGTGGGCAGTCGCCTGCGGGGT
ATCATCCAACTGAACGACGGTGTGTTCACCAATCCGGAGCACTCCTTGGA
GGGACTAGAGGACTTTTCCCATCTGTGGCTCATCTATCATTTTCACCGCA
ACAATTCCCACCCCAAGGCCAAGGTGGCGCCTCCCCGTCTTGGTGGGGAG
CGGGTGGGTGTGTTTTCCACACGATCTCCACACCGCCCGTGTCCCATTGG
TCTCTCGTTGGTGGAGATTGAGAAGATCGAGAACGCCACCATTAGTTTCT
TTGGTACGGACATGGTAGACGGCACACCCGTGTTGGACATTAAGCCCTAC
ATTCCACACTACGATGCACCATCCTTGAGCGTTGACTCAGGAAGAACCTC
TGTTGGACCGCATGAGAGCAGCCTGGACTTCTACGACTCCAGACAGGAGC
CTGACGGAGAGGAATCGGACCTGGAACTGTATGGAGCAGCTGGCTACAGC
GGGAACGCGGGCATTGGAGCTGACGCTATTCTGCCGCCACCCAGCGCCGT
GCGAGTGCCCAACTGGGTGGTGGCCAGCAATAGACTTAGCGTGACCTTTA
ACGAGCATGCCGAGGCGCAGTTAAAGGAGCTGCAGGTGGAGAAGCAGTGC
ATCGTGGACATTCTGGAGGCGGATCCGCGCTCCGTTTACTTGCGCACAAA
ATATGGCTCGCAAATATTTACCTTCCAGCTGCGGGAGGTCACGGTGACGT
GCAAATTTGATGACAAGGCCGGCACGGTGACTGTGGTTCAGGTCCGGCGC
AACGAGAATGTCCAGGTTACCGCCCTGGACGGCGACCTGCGCAGCGCCGC
AAGCTTTCTAGACCAT
BO17360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-RB | 1185 | CG12822-PB | 1..1182 | 17..1198 | 5910 | 100 | Plus |
CG12822-RA | 1239 | CG12822-PA | 1..725 | 17..741 | 3625 | 100 | Plus |
CG18853-RA | 993 | CG18853-PA | 1..508 | 17..524 | 2540 | 100 | Plus |
CG12822-RA | 1239 | CG12822-PA | 776..1236 | 738..1198 | 2305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-RB | 1468 | CG12822-RB | 134..1315 | 17..1198 | 5910 | 100 | Plus |
CG12822-RA | 1522 | CG12822-RA | 134..858 | 17..741 | 3625 | 100 | Plus |
CG18853-RA | 1157 | CG18853-RA | 133..640 | 17..524 | 2540 | 100 | Plus |
CG12822-RA | 1522 | CG12822-RA | 909..1369 | 738..1198 | 2305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7832700..7833177 | 264..741 | 2390 | 100 | Plus |
2R | 25286936 | 2R | 7833228..7833688 | 738..1198 | 2305 | 100 | Plus |
2R | 25286936 | 2R | 7829590..7829850 | 264..524 | 1305 | 100 | Plus |
2R | 25286936 | 2R | 7829343..7829532 | 76..265 | 950 | 100 | Plus |
2R | 25286936 | 2R | 7832453..7832642 | 76..265 | 950 | 100 | Plus |
2R | 25286936 | 2R | 7829194..7829256 | 17..79 | 315 | 100 | Plus |
2R | 25286936 | 2R | 7832304..7832366 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6712..6891 | 66..249 | 164 | 59.3 | Plus |
BO17360.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:19 Download gff for
BO17360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 1..1185 | 17..1202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:25 Download gff for
BO17360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 130..1325 | 9..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:38 Download gff for
BO17360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 134..1315 | 17..1200 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:19 Download gff for
BO17360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 130..1325 | 9..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:30 Download gff for
BO17360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12822-RB | 134..1315 | 17..1200 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:30 Download gff for
BO17360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7832304..7832365 | 17..78 | 100 | -> | Plus |
2R | 7832456..7832642 | 79..265 | 100 | -> | Plus |
2R | 7832702..7833176 | 266..740 | 100 | -> | Plus |
2R | 7833231..7833688 | 741..1200 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:38 Download gff for
BO17360.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3719809..3719870 | 17..78 | 100 | -> | Plus |
arm_2R | 3719961..3720147 | 79..265 | 100 | -> | Plus |
arm_2R | 3720207..3720681 | 266..740 | 100 | -> | Plus |
arm_2R | 3720736..3721193 | 741..1200 | 99 | | Plus |
BO17360.pep Sequence
Translation from 16 to 1216
> BO17360.pep
MHEDDLKSQLTIARNEINNLRQQVRNLQHVQRKDIETITRLLQDFRCEGC
ANNNKSAKDKVAGEKQEHQHQQQTQDQQTGQGQSNYTNGGHCLGEDYAHF
RPIGVIRTAFPEKRAVPRQSIVGSRLRGIIQLNDGVFTNPEHSLEGLEDF
SHLWLIYHFHRNNSHPKAKVAPPRLGGERVGVFSTRSPHRPCPIGLSLVE
IEKIENATISFFGTDMVDGTPVLDIKPYIPHYDAPSLSVDSGRTSVGPHE
SSLDFYDSRQEPDGEESDLELYGAAGYSGNAGIGADAILPPPSAVRVPNW
VVASNRLSVTFNEHAEAQLKELQVEKQCIVDILEADPRSVYLRTKYGSQI
FTFQLREVTVTCKFDDKAGTVTVVQVRRNENVQVTALDGDLRSAASFLDH
BO17360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12822-PB | 394 | CG12822-PB | 1..394 | 1..394 | 2068 | 100 | Plus |
CG12822-PA | 412 | CG12822-PA | 1..412 | 1..394 | 2039 | 95.6 | Plus |
CG18853-PA | 330 | CG18853-PA | 1..213 | 1..203 | 907 | 83.8 | Plus |