Clone Sequence Records
BO17362.3prime Sequence
617 bp (617 high quality bases) assembled on 2006-10-13
> BO17362.3prime
ATGGTCTAGAAAGCTTGCGATCTCGTAGTTGCGGAACTTGTTGGCCACAT
CGGTGTTCTCGCCGCCCCACTCGCCCTTGCGACTCCCGTAGTACAAGGCC
GCCCCGCCCTCCGAGGCCCGCCGGTGGGCGGGATTGGGGGATGCTGCGGT
CAGGCCACCGCTGCTGCATCCTGCACCGGTTCCAGGTCCCTGGGCAGCTG
CTCCACCGGTCTCGGGCAGCATGCGATCCTTGGTCTTGGGTGTTACCCAG
TGCATGGACTCTTTATCCACTTTCTCGGCAATCGTGTATCTTCTCACCTG
ACCGACATGCTCCTTCATGCCCAGCCACTGTTTGTAGCTCATCGAGATGC
CGCTGTTGCGCCACTTGTCGTAGATGGCCCTCTTTTCGGGATCGCACAAG
GTTTCCTTGGCCTCCTTTAACTGCTGGAACTTGGCCTCCGCCTCCTTGTC
GCCGGAGTTCTTGTCGGGATGGTACTGAAGGGCCAGGACTTTGTACTCGG
CCTGGATCTGCTCGGGCGATGAGTTCTCATCGCAATGGAGCAGACCGTAG
AAGTCCTCGTTGGGACTGCGCTTGTAATTGATTATAGCATCAACGGCGCT
CATGTCGACTGATAACT
BO17362.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2239-PA | 588 | jdp-RA | 1..585 | 603..19 | 2925 | 100 | Minus |
CG2239-PC | 513 | jdp-RC | 1..345 | 603..259 | 1725 | 100 | Minus |
CG2239-PB | 549 | jdp-RB | 1..306 | 603..298 | 1530 | 100 | Minus |
CG2239-PB | 549 | jdp-RB | 305..546 | 260..19 | 1210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:57:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RA | 1960 | CG2239-RA | 101..685 | 603..19 | 2925 | 100 | Minus |
jdp-RC | 663 | CG2239-RC | 101..445 | 603..259 | 1725 | 100 | Minus |
jdp-RB | 1921 | CG2239-RB | 101..406 | 603..298 | 1530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30518334..30518575 | 19..260 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 30519608..30519765 | 259..416 | 790 | 100 | Plus |
3R | 32079331 | 3R | 30523227..30523330 | 414..517 | 520 | 100 | Plus |
3R | 32079331 | 3R | 30526243..30526329 | 517..603 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:57:14 has no hits.
BO17362.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:58 Download gff for
BO17362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2239-PA | 1..588 | 15..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:05:28 Download gff for
BO17362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 101..689 | 14..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:50 Download gff for
BO17362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 101..689 | 14..603 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:50 Download gff for
BO17362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30518330..30518573 | 14..258 | 99 | <- | Plus |
3R | 30519608..30519763 | 259..414 | 100 | <- | Plus |
3R | 30523228..30523329 | 415..516 | 100 | <- | Plus |
3R | 30526243..30526329 | 517..603 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:05:28 Download gff for
BO17362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26344052..26344295 | 14..258 | 99 | <- | Plus |
arm_3R | 26345330..26345485 | 259..414 | 100 | <- | Plus |
arm_3R | 26348950..26349051 | 415..516 | 100 | <- | Plus |
arm_3R | 26351965..26352051 | 517..603 | 100 | | Plus |
BO17362.5prime Sequence
617 bp (617 high quality bases) assembled on 2006-10-13
> BO17362.5prime
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGTCCATGCACTGGGTAACACCCAAGACCAAGGATCGCATG
CTGCCCGAGACCGGTGGAGCAGCTGCCCAGGGACCTGGAACCGGTGCAGG
ATGCAGCAGCGGTGGCCTGACCGCAGCATCCCCCAATCCCGCCCACCGGC
GGGCCTCGGAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAAGGGCGAG
TGGGGCGGCGAGAACACCGATGTGGCCAACAAGTTCCGCAACTACGAGAT
CGCAAGCTTTCTAGACC
BO17362.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2239-PA | 588 | jdp-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
CG2239-PC | 513 | jdp-RC | 1..345 | 17..361 | 1725 | 100 | Plus |
CG2239-PB | 549 | jdp-RB | 1..306 | 17..322 | 1530 | 100 | Plus |
CG2239-PB | 549 | jdp-RB | 305..546 | 360..601 | 1210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RA | 1960 | CG2239-RA | 101..685 | 17..601 | 2925 | 100 | Plus |
jdp-RC | 663 | CG2239-RC | 101..445 | 17..361 | 1725 | 100 | Plus |
jdp-RB | 1921 | CG2239-RB | 101..406 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30518334..30518575 | 601..360 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 30519608..30519765 | 361..204 | 790 | 100 | Minus |
3R | 32079331 | 3R | 30523227..30523330 | 206..103 | 520 | 100 | Minus |
3R | 32079331 | 3R | 30526243..30526329 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:36:51 has no hits.
BO17362.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:59 Download gff for
BO17362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2239-PA | 1..588 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:01:44 Download gff for
BO17362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 101..689 | 17..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:56:29 Download gff for
BO17362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 101..689 | 17..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:56:29 Download gff for
BO17362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30518330..30518573 | 362..606 | 99 | <- | Minus |
3R | 30519608..30519763 | 206..361 | 100 | <- | Minus |
3R | 30523228..30523329 | 104..205 | 100 | <- | Minus |
3R | 30526243..30526329 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:01:44 Download gff for
BO17362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26344052..26344295 | 362..606 | 99 | <- | Minus |
arm_3R | 26345330..26345485 | 206..361 | 100 | <- | Minus |
arm_3R | 26348950..26349051 | 104..205 | 100 | <- | Minus |
arm_3R | 26351965..26352051 | 17..103 | 100 | | Minus |
BO17362.complete Sequence
619 bp assembled on 2007-10-17
GenBank Submission: FJ634091
> BO17362.complete
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGTCCATGCACTGGGTAACACCCAAGACCAAGGATCGCATG
CTGCCCGAGACCGGTGGAGCAGCTGCCCAGGGACCTGGAACCGGTGCAGG
ATGCAGCAGCGGTGGCCTGACCGCAGCATCCCCCAATCCCGCCCACCGGC
GGGCCTCGGAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAAGGGCGAG
TGGGGCGGCGAGAACACCGATGTGGCCAACAAGTTCCGCAACTACGAGAT
CGCAAGCTTTCTAGACCAT
BO17362.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RA | 588 | CG2239-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
jdp-RC | 513 | CG2239-PC | 1..345 | 17..361 | 1725 | 100 | Plus |
jdp-RB | 549 | CG2239-PB | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RA | 1960 | CG2239-RA | 101..685 | 17..601 | 2925 | 100 | Plus |
jdp-RC | 663 | CG2239-RC | 101..445 | 17..361 | 1725 | 100 | Plus |
jdp-RB | 1921 | CG2239-RB | 101..406 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30518334..30518575 | 601..360 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 30519608..30519765 | 361..204 | 790 | 100 | Minus |
3R | 32079331 | 3R | 30523227..30523330 | 206..103 | 520 | 100 | Minus |
3R | 32079331 | 3R | 30526243..30526329 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:19:14 has no hits.
BO17362.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:27 Download gff for
BO17362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 1..588 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:08 Download gff for
BO17362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 103..691 | 17..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:36 Download gff for
BO17362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 101..685 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:40 Download gff for
BO17362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 103..687 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:45 Download gff for
BO17362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RA | 101..685 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:45 Download gff for
BO17362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30518332..30518573 | 362..603 | 99 | <- | Minus |
3R | 30519608..30519763 | 206..361 | 100 | <- | Minus |
3R | 30523228..30523329 | 104..205 | 100 | <- | Minus |
3R | 30526243..30526329 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:36 Download gff for
BO17362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26344054..26344295 | 362..603 | 99 | <- | Minus |
arm_3R | 26345330..26345485 | 206..361 | 100 | <- | Minus |
arm_3R | 26348950..26349051 | 104..205 | 100 | <- | Minus |
arm_3R | 26351965..26352051 | 17..103 | 100 | | Minus |
BO17362.pep Sequence
Translation from 16 to 619
> BO17362.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQVRRYTIAEKVDKESMHWVTPKTKDRMLPETGGAAAQGPGTGAGCSSGG
LTAASPNPAHRRASEGGAALYYGSRKGEWGGENTDVANKFRNYEIASFLD
H
BO17362.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-PA | 195 | CG2239-PA | 1..195 | 1..195 | 1047 | 100 | Plus |
jdp-PB | 182 | CG2239-PB | 1..182 | 1..195 | 959 | 93.3 | Plus |
jdp-PC | 170 | CG2239-PC | 1..115 | 1..115 | 611 | 100 | Plus |
DnaJ-1-PA | 334 | CG10578-PA | 3..72 | 16..86 | 152 | 40.8 | Plus |
CG7130-PA | 128 | CG7130-PA | 3..72 | 16..86 | 145 | 40.8 | Plus |