Clone BO17362 Report

Search the DGRC for BO17362

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptjdp-RA
Protein status:BO17362.pep: validated full length
Sequenced Size:619

Clone Sequence Records

BO17362.3prime Sequence

617 bp (617 high quality bases) assembled on 2006-10-13

> BO17362.3prime
ATGGTCTAGAAAGCTTGCGATCTCGTAGTTGCGGAACTTGTTGGCCACAT
CGGTGTTCTCGCCGCCCCACTCGCCCTTGCGACTCCCGTAGTACAAGGCC
GCCCCGCCCTCCGAGGCCCGCCGGTGGGCGGGATTGGGGGATGCTGCGGT
CAGGCCACCGCTGCTGCATCCTGCACCGGTTCCAGGTCCCTGGGCAGCTG
CTCCACCGGTCTCGGGCAGCATGCGATCCTTGGTCTTGGGTGTTACCCAG
TGCATGGACTCTTTATCCACTTTCTCGGCAATCGTGTATCTTCTCACCTG
ACCGACATGCTCCTTCATGCCCAGCCACTGTTTGTAGCTCATCGAGATGC
CGCTGTTGCGCCACTTGTCGTAGATGGCCCTCTTTTCGGGATCGCACAAG
GTTTCCTTGGCCTCCTTTAACTGCTGGAACTTGGCCTCCGCCTCCTTGTC
GCCGGAGTTCTTGTCGGGATGGTACTGAAGGGCCAGGACTTTGTACTCGG
CCTGGATCTGCTCGGGCGATGAGTTCTCATCGCAATGGAGCAGACCGTAG
AAGTCCTCGTTGGGACTGCGCTTGTAATTGATTATAGCATCAACGGCGCT
CATGTCGACTGATAACT

BO17362.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2239-PA 588 jdp-RA 1..585 603..19 2925 100 Minus
CG2239-PC 513 jdp-RC 1..345 603..259 1725 100 Minus
CG2239-PB 549 jdp-RB 1..306 603..298 1530 100 Minus
CG2239-PB 549 jdp-RB 305..546 260..19 1210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RA 1960 CG2239-RA 101..685 603..19 2925 100 Minus
jdp-RC 663 CG2239-RC 101..445 603..259 1725 100 Minus
jdp-RB 1921 CG2239-RB 101..406 603..298 1530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30518334..30518575 19..260 1210 100 Plus
3R 32079331 3R 30519608..30519765 259..416 790 100 Plus
3R 32079331 3R 30523227..30523330 414..517 520 100 Plus
3R 32079331 3R 30526243..30526329 517..603 435 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:57:14 has no hits.

BO17362.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:58 Download gff for BO17362.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2239-PA 1..588 15..603 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:05:28 Download gff for BO17362.3prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 101..689 14..603 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:50 Download gff for BO17362.3prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 101..689 14..603 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:50 Download gff for BO17362.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30518330..30518573 14..258 99 <- Plus
3R 30519608..30519763 259..414 100 <- Plus
3R 30523228..30523329 415..516 100 <- Plus
3R 30526243..30526329 517..603 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:05:28 Download gff for BO17362.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26344052..26344295 14..258 99 <- Plus
arm_3R 26345330..26345485 259..414 100 <- Plus
arm_3R 26348950..26349051 415..516 100 <- Plus
arm_3R 26351965..26352051 517..603 100   Plus

BO17362.5prime Sequence

617 bp (617 high quality bases) assembled on 2006-10-13

> BO17362.5prime
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGTCCATGCACTGGGTAACACCCAAGACCAAGGATCGCATG
CTGCCCGAGACCGGTGGAGCAGCTGCCCAGGGACCTGGAACCGGTGCAGG
ATGCAGCAGCGGTGGCCTGACCGCAGCATCCCCCAATCCCGCCCACCGGC
GGGCCTCGGAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAAGGGCGAG
TGGGGCGGCGAGAACACCGATGTGGCCAACAAGTTCCGCAACTACGAGAT
CGCAAGCTTTCTAGACC

BO17362.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2239-PA 588 jdp-RA 1..585 17..601 2925 100 Plus
CG2239-PC 513 jdp-RC 1..345 17..361 1725 100 Plus
CG2239-PB 549 jdp-RB 1..306 17..322 1530 100 Plus
CG2239-PB 549 jdp-RB 305..546 360..601 1210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RA 1960 CG2239-RA 101..685 17..601 2925 100 Plus
jdp-RC 663 CG2239-RC 101..445 17..361 1725 100 Plus
jdp-RB 1921 CG2239-RB 101..406 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30518334..30518575 601..360 1210 100 Minus
3R 32079331 3R 30519608..30519765 361..204 790 100 Minus
3R 32079331 3R 30523227..30523330 206..103 520 100 Minus
3R 32079331 3R 30526243..30526329 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:36:51 has no hits.

BO17362.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:59 Download gff for BO17362.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2239-PA 1..588 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:01:44 Download gff for BO17362.5prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 101..689 17..606 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:56:29 Download gff for BO17362.5prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 101..689 17..606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:56:29 Download gff for BO17362.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30518330..30518573 362..606 99 <- Minus
3R 30519608..30519763 206..361 100 <- Minus
3R 30523228..30523329 104..205 100 <- Minus
3R 30526243..30526329 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:01:44 Download gff for BO17362.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26344052..26344295 362..606 99 <- Minus
arm_3R 26345330..26345485 206..361 100 <- Minus
arm_3R 26348950..26349051 104..205 100 <- Minus
arm_3R 26351965..26352051 17..103 100   Minus

BO17362.complete Sequence

619 bp assembled on 2007-10-17

GenBank Submission: FJ634091

> BO17362.complete
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGTCCATGCACTGGGTAACACCCAAGACCAAGGATCGCATG
CTGCCCGAGACCGGTGGAGCAGCTGCCCAGGGACCTGGAACCGGTGCAGG
ATGCAGCAGCGGTGGCCTGACCGCAGCATCCCCCAATCCCGCCCACCGGC
GGGCCTCGGAGGGCGGGGCGGCCTTGTACTACGGGAGTCGCAAGGGCGAG
TGGGGCGGCGAGAACACCGATGTGGCCAACAAGTTCCGCAACTACGAGAT
CGCAAGCTTTCTAGACCAT

BO17362.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RA 588 CG2239-PA 1..585 17..601 2925 100 Plus
jdp-RC 513 CG2239-PC 1..345 17..361 1725 100 Plus
jdp-RB 549 CG2239-PB 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RA 1960 CG2239-RA 101..685 17..601 2925 100 Plus
jdp-RC 663 CG2239-RC 101..445 17..361 1725 100 Plus
jdp-RB 1921 CG2239-RB 101..406 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30518334..30518575 601..360 1210 100 Minus
3R 32079331 3R 30519608..30519765 361..204 790 100 Minus
3R 32079331 3R 30523227..30523330 206..103 520 100 Minus
3R 32079331 3R 30526243..30526329 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:19:14 has no hits.

BO17362.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:27 Download gff for BO17362.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 1..588 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:08 Download gff for BO17362.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 103..691 17..606 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:36 Download gff for BO17362.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 101..685 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:40 Download gff for BO17362.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 103..687 17..603 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:45 Download gff for BO17362.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RA 101..685 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:45 Download gff for BO17362.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30518332..30518573 362..603 99 <- Minus
3R 30519608..30519763 206..361 100 <- Minus
3R 30523228..30523329 104..205 100 <- Minus
3R 30526243..30526329 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:36 Download gff for BO17362.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26344054..26344295 362..603 99 <- Minus
arm_3R 26345330..26345485 206..361 100 <- Minus
arm_3R 26348950..26349051 104..205 100 <- Minus
arm_3R 26351965..26352051 17..103 100   Minus

BO17362.pep Sequence

Translation from 16 to 619

> BO17362.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQVRRYTIAEKVDKESMHWVTPKTKDRMLPETGGAAAQGPGTGAGCSSGG
LTAASPNPAHRRASEGGAALYYGSRKGEWGGENTDVANKFRNYEIASFLD
H

BO17362.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-PA 195 CG2239-PA 1..195 1..195 1047 100 Plus
jdp-PB 182 CG2239-PB 1..182 1..195 959 93.3 Plus
jdp-PC 170 CG2239-PC 1..115 1..115 611 100 Plus
DnaJ-1-PA 334 CG10578-PA 3..72 16..86 152 40.8 Plus
CG7130-PA 128 CG7130-PA 3..72 16..86 145 40.8 Plus