Clone Sequence Records
BO17365.3prime Sequence
737 bp (687 high quality bases) assembled on 2006-10-13
> BO17365.3prime
ATGGTCTAGAAAGCTTGCTAGTCCCGGCTTGGTTTTGTCATCGATGCTGC
TTCCGGCGCTCGCCGTGCTGCCCGCATCCGATGGCACCGGGCTGGACCGT
CCTGATCCTGCCCTGGATCCGGATTCCACGGGAGTGGGAATGGGACTGGT
TGTCGGACTGGTCTCCAGGTCGCTTGTGCTGCAGATTTCCTCATCCGCTT
GTGTCTTGCTGGTCACCGCCTCGGGCTTGCACTCCTCGCTGGACTGGTCG
GCCTTCTCCGCCCAGGAGCGAAGGAACTCCACCACGTGACAGTGGCCGAA
GTTCTCTGCCTCATCCACGGGCAGATTTCCCCAGCGATCCTTGGGGTTGT
GTGGTACATGACACTGTTCCAGCAGGAACTTGACGCACTCCAAGTGTCCT
TCGGACGCAGCCAAATGGAGGGCAGTGCGACCATCGTAGTCGGCCAGAGT
GATATCCATTCCGGAGAGACGATGACGCCGCAAGGCTGTAACATCGCCGC
TGGCAGCTGAAAAGAGTAGATTCACGATGGACAGACCCTTGGTCTCGTAG
CGGTGCTTCCGCGGATCCTTCTTGTTGGACAGATGCTTCAGGTTGTCGTA
GCGATGGAAATTGAACATGGAGACCAGCTCCTCACAAAACTGTAGTCCTC
TCACTGTATTGCCTAAGTGATCCAAGGGCGGAGACCAGGCAAAGATGCCC
ATTACGTTGGGGATGACCAGCATCATGCCGCCACTCA
BO17365.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8772-PF | 2016 | nemy-RF | 1295..2013 | 737..19 | 3595 | 100 | Minus |
| CG8772-PD | 2151 | nemy-RD | 1430..2148 | 737..19 | 3595 | 100 | Minus |
| CG8772-PA | 2121 | nemy-RA | 1400..2118 | 737..19 | 3595 | 100 | Minus |
| CG8772-PE | 1947 | nemy-RE | 1226..1944 | 737..19 | 3595 | 100 | Minus |
| CG8772-PC | 1977 | nemy-RC | 1256..1974 | 737..19 | 3595 | 100 | Minus |
| CG8772-PB | 2214 | nemy-RB | 1493..2211 | 737..19 | 3595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RB | 2970 | CG42708-RB | 1556..2274 | 737..19 | 3595 | 100 | Minus |
| CG42708-RC | 2741 | CG42708-RC | 1327..2045 | 737..19 | 3595 | 100 | Minus |
| CG42708-RE | 2711 | CG42708-RE | 1297..2015 | 737..19 | 3595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12671556..12672104 | 189..737 | 2745 | 100 | Plus |
| 2R | 25286936 | 2R | 12671179..12671351 | 19..191 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:52:19 has no hits.
BO17365.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:01 Download gff for
BO17365.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8772-PB | 1494..2214 | 15..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:33:11 Download gff for
BO17365.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RE | 1298..2027 | 5..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:33 Download gff for
BO17365.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RE | 1298..2027 | 5..736 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:33 Download gff for
BO17365.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12671167..12671349 | 5..189 | 97 | <- | Plus |
| 2R | 12671557..12672103 | 190..736 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:33:11 Download gff for
BO17365.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8558672..8558854 | 5..189 | 97 | <- | Plus |
| arm_2R | 8559062..8559608 | 190..736 | 100 | | Plus |
BO17365.5prime Sequence
779 bp (699 high quality bases) assembled on 2006-10-13
> BO17365.5prime
GAAGTTATCAGTCGACATGCTTAAAGGTGTTCCCACGCTAGCCGGTCGAA
ACCTTCGTCTCCTGACGACCCAGGCACAGGTGCTGGTCCATCAACGCGCC
AAAGCGTCCGCCGCCGAGCCCGTCGAGGACTTTGACCAGGAGACGGATCT
TTTGAAGCGCGCCAAGTTCGGACACACGGGCAAACAGCTGCAGCAGAAAA
TAATCAATGAGAAAAATCTGCGCGCTCCACCGCTTATGAACTTGGTGTTT
GCCAATCGGAAGTTGTCCTTCTACGATACCAGTTCCACTCCCAAGACCAA
AGAGGATAATGCCAAGCTCAGTCAGAGACGCCACTATTCGATGCGGCCCC
ATCGCGAGCAGGAGCAGCGAAATGCGGAGGATGTGCTATTCGACATGTTC
GCCAGCGAGGAGACGGGCCTCATCTCGATGGGCAAGTTCCTGGCCGGGCT
AAAGACCACCGGAATTCGCCGGAACGATCCGCGAGTGCGAGAACTGATGG
ACAACTTGAAGAAAGTGCACAAGCTAAATAACTACGAGACGGGTTCTTCG
GCGGAAACTCAGCATCTCAATCGAGAGACCTTCAAGGCTGTGGTTGCCCC
CAATATTGTGCTGATTGCCAAGGCCTTCCGGCAGCAGTTCGTTATTCCCG
ACTTTACGAGTTTCGTCAAGGACATCGAGGATATTTACAATCGCTGCAAG
ACCAACACTTTGGGCAAGTTGGCCGACTACATTCCGCAGCTGGCTCGCTA
TAATCCCGATTCTTGGGGCCTGAACATCT
BO17365.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8772-PD | 2151 | nemy-RD | 1..763 | 17..779 | 3765 | 99.7 | Plus |
| CG8772-PC | 1977 | nemy-RC | 22..589 | 212..779 | 2790 | 99.6 | Plus |
| CG8772-PB | 2214 | nemy-RB | 366..826 | 319..779 | 2255 | 99.5 | Plus |
| CG8772-PA | 2121 | nemy-RA | 303..733 | 349..779 | 2105 | 99.5 | Plus |
| CG8772-PE | 1947 | nemy-RE | 129..559 | 349..779 | 2105 | 99.5 | Plus |
| CG8772-PF | 2016 | nemy-RF | 198..628 | 349..779 | 2105 | 99.5 | Plus |
| CG8772-PA | 2121 | nemy-RA | 1..303 | 17..319 | 1515 | 100 | Plus |
| CG8772-PE | 1947 | nemy-RE | 22..129 | 212..319 | 540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RD | 2912 | CG42708-RD | 192..954 | 17..779 | 3785 | 99.7 | Plus |
| CG42708-RC | 2741 | CG42708-RC | 93..660 | 212..779 | 2810 | 99.6 | Plus |
| CG42708-RB | 2970 | CG42708-RB | 429..889 | 319..779 | 2275 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12673100..12673339 | 588..349 | 1200 | 100 | Minus |
| 2R | 25286936 | 2R | 12679208..12679402 | 211..17 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 12672847..12673037 | 779..589 | 925 | 99 | Minus |
| 2R | 25286936 | 2R | 12676125..12676233 | 318..210 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:18:33 has no hits.
BO17365.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:02 Download gff for
BO17365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8772-PD | 1..763 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:16:37 Download gff for
BO17365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RD | 186..954 | 11..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:32 Download gff for
BO17365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RD | 186..954 | 11..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:32 Download gff for
BO17365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12673100..12673339 | 349..588 | 100 | <- | Minus |
| 2R | 12673899..12673928 | 319..348 | 100 | <- | Minus |
| 2R | 12676125..12676231 | 212..318 | 100 | <- | Minus |
| 2R | 12679208..12679408 | 11..211 | 98 | | Minus |
| 2R | 12672847..12673037 | 589..779 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:16:37 Download gff for
BO17365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8560352..8560542 | 589..779 | 98 | <- | Minus |
| arm_2R | 8560605..8560844 | 349..588 | 100 | <- | Minus |
| arm_2R | 8561404..8561433 | 319..348 | 100 | <- | Minus |
| arm_2R | 8563630..8563736 | 212..318 | 100 | <- | Minus |
| arm_2R | 8566713..8566913 | 11..211 | 98 | | Minus |
BO17365.complete Sequence
2182 bp assembled on 2006-12-18
GenBank Submission: FJ634092
> BO17365.complete
GAAGTTATCAGTCGACATGCTTAAAGGTGTTCCCACGCTAGCCGGTCGAA
ACCTTCGTCTCCTGACGACCCAGGCACAGGTGCTGGTCCATCAACGCGCC
AAAGCGTCCGCCGCCGAGCCCGTCGAGGACTTTGACCAGGAGACGGATCT
TTTGAAGCGCGCCAAGTTCGGACACACGGGCAAACAGCTGCAGCAGAAAA
TAATCAATGAGAAAAATCTGCGCGCTCCACCGCTTATGAACTTGGTGTTT
GCCAATCGGAAGTTGTCCTTCTACGATACCAGTTCCACTCCCAAGACCAA
AGAGGATAATGCCAAGCTCAGTCAGAGACGCCACTATTCGATGCGGCCCC
ATCGCGAGCAGGAGCAGCGAAATGCGGAGGATGTGCTATTCGACATGTTC
GCCAGCGAGGAGACGGGCCTCATCTCGATGGGCAAGTTCCTGGCCGGGCT
AAAGACCACCGGAATTCGCCGGAACGATCCGCGAGTGCGAGAACTGATGG
ACAACTTGAAGAAAGTGCACAAGCTAAATAACTACGAGACGGGTTCTTCG
GCGGAAACTCAGCATCTCAATCGAGAGACCTTCAAGGCTGTGGTTGCCCC
CAATATTGTGCTGATTGCCAAGGCCTTCCGGCAGCAGTTCGTTATTCCCG
ACTTTACGAGTTTCGTCAAGGACATCGAGGATATTTACAATCGCTGCAAG
ACCAACACTTTGGGCAAGTTGGCCGACTACATTCCGCAGCTGGCTCGCTA
TAATCCCGATTCCTGGGGCCTGAGCATCTGCACGATTGATGGCCAGCGCT
TCTCCATCGGCGATGTGGATGTGCCCTTCACACTCCAGAGTTGCAGTAAG
CCGCTGACCTACGCCATTGCCCTGGAGAAACTGGGTCCCAAGGTCGTGCA
CTCTTATGTGGGCCAGGAGCCGAGTGGCAGGAACTTCAACGAACTTGTTC
TGGATCAGAACAAAAAGCCACACAATCCGATGATCAACGCTGGTGCCATT
CTGACGTGCTCCCTGATGAACGCCCTTGTCAAGCCGGACATGACCTCCGC
TGAGATCTTCGACTACACCATGTCTTGGTTCAAACGGCTGTCGGGCGGAG
AGTATATCGGCTTTAATAATGCCGTATTCCTGTCCGAACGCGAGGCTGCC
GATCGGAACTATGCCCTGGGCTTCTACATGCGGGAGAACAAGTGCTTCCC
CAAGCGCACCAATCTCAAGGAGGTGATGGACTTTTACTTCCAGTGCTGCT
CCATGGAGACCAACTGCGAGGCAATGTCCGTAATCGCGGCCAGTTTGGCC
AATGGTGGCATCTGCCCCACCACCGAGGAGAAGGTGTTCCGGCCGGAGGT
AATCCGGGATGTGCTCTCGATTATGCACTCATGCGGTACATACGACTATT
CCGGACAGTTCGCCTTCAAGGTGGGTCTGCCAGCCAAGTCTGGAGTGAGT
GGCGGCATGATGCTGGTCATCCCCAACGTAATGGGCATCTTTGCCTGGTC
TCCGCCCTTGGATCACTTAGGCAATACAGTGAGAGGACTACAGTTTTGTG
AGGAGCTGGTCTCCATGTTCAATTTCCATCGCTACGACAACCTGAAGCAT
CTGTCCAACAAGAAGGATCCGCGGAAGCACCGCTACGAGACCAAGGGTCT
GTCCATCGTGAATCTACTCTTTTCAGCTGCCAGCGGCGATGTTACAGCCT
TGCGGCGTCATCGTCTCTCCGGAATGGATATCACTCTGGCCGACTACGAT
GGTCGCACTGCCCTCCATTTGGCTGCGTCCGAAGGACACTTGGAGTGCGT
CAAGTTCCTGCTGGAACAGTGTCATGTACCACACAACCCCAAGGATCGCT
GGGGAAATCTGCCCGTGGATGAGGCAGAGAACTTCGGCCACTGTCACGTG
GTGGAGTTCCTTCGCTCCTGGGCGGAGAAGGCCGACCAGTCCAGCGAGGA
GTGCAAGCCCGAGGCGGTGACCAGCAAGACACAAGCGGATGAGGAAATCT
GCAGCACAAGCGACCTGGAGACCAGTCCGACAACCAGTCCCATTCCCACT
CCCGTGGAATCCGGATCCAGGGCAGGATCAGGACGGTCCAGCCCGGTGCC
ATCGGATGCGGGCAGCACGGCGAGCGCCGGAAGCAGCATCGATGACAAAA
CCAAGCCGGGACTAGCAAGCTTTCTAGACCAT
BO17365.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:52:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RD | 2151 | CG42708-PD | 1..2148 | 17..2164 | 10740 | 100 | Plus |
| CG42708-RC | 1977 | CG42708-PC | 22..1974 | 212..2164 | 9765 | 100 | Plus |
| CG42708-RB | 2214 | CG42708-PB | 366..2211 | 319..2164 | 9230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RD | 2912 | CG42708-RD | 192..2339 | 17..2164 | 10740 | 100 | Plus |
| CG42708-RC | 2741 | CG42708-RC | 93..2045 | 212..2164 | 9765 | 100 | Plus |
| CG42708-RB | 2970 | CG42708-RB | 429..2274 | 319..2164 | 9230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12671556..12672587 | 1994..963 | 5160 | 100 | Minus |
| 2R | 25286936 | 2R | 12672664..12673037 | 962..589 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 12673100..12673339 | 588..349 | 1200 | 100 | Minus |
| 2R | 25286936 | 2R | 12679208..12679402 | 211..17 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 12671179..12671351 | 2164..1992 | 865 | 100 | Minus |
| 2R | 25286936 | 2R | 12676125..12676233 | 318..210 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:52:15 has no hits.
BO17365.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:19 Download gff for
BO17365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RD | 1..2151 | 17..2168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:57 Download gff for
BO17365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RD | 182..2347 | 11..2178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:23 Download gff for
BO17365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RD | 192..2339 | 17..2166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:19 Download gff for
BO17365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RD | 182..2347 | 11..2178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:20 Download gff for
BO17365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RD | 192..2339 | 17..2166 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:20 Download gff for
BO17365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12671177..12671349 | 1994..2166 | 98 | <- | Minus |
| 2R | 12671557..12672587 | 963..1993 | 100 | <- | Minus |
| 2R | 12672664..12673037 | 589..962 | 100 | <- | Minus |
| 2R | 12673100..12673339 | 349..588 | 100 | <- | Minus |
| 2R | 12673899..12673928 | 319..348 | 100 | <- | Minus |
| 2R | 12676125..12676231 | 212..318 | 100 | <- | Minus |
| 2R | 12679208..12679402 | 17..211 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:23 Download gff for
BO17365.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8560169..8560542 | 589..962 | 100 | <- | Minus |
| arm_2R | 8558682..8558854 | 1994..2166 | 98 | <- | Minus |
| arm_2R | 8559062..8560092 | 963..1993 | 100 | <- | Minus |
| arm_2R | 8560605..8560844 | 349..588 | 100 | <- | Minus |
| arm_2R | 8561404..8561433 | 319..348 | 100 | <- | Minus |
| arm_2R | 8563630..8563736 | 212..318 | 100 | <- | Minus |
| arm_2R | 8566713..8566907 | 17..211 | 100 | | Minus |
BO17365.pep Sequence
Translation from 16 to 2182
> BO17365.pep
MLKGVPTLAGRNLRLLTTQAQVLVHQRAKASAAEPVEDFDQETDLLKRAK
FGHTGKQLQQKIINEKNLRAPPLMNLVFANRKLSFYDTSSTPKTKEDNAK
LSQRRHYSMRPHREQEQRNAEDVLFDMFASEETGLISMGKFLAGLKTTGI
RRNDPRVRELMDNLKKVHKLNNYETGSSAETQHLNRETFKAVVAPNIVLI
AKAFRQQFVIPDFTSFVKDIEDIYNRCKTNTLGKLADYIPQLARYNPDSW
GLSICTIDGQRFSIGDVDVPFTLQSCSKPLTYAIALEKLGPKVVHSYVGQ
EPSGRNFNELVLDQNKKPHNPMINAGAILTCSLMNALVKPDMTSAEIFDY
TMSWFKRLSGGEYIGFNNAVFLSEREAADRNYALGFYMRENKCFPKRTNL
KEVMDFYFQCCSMETNCEAMSVIAASLANGGICPTTEEKVFRPEVIRDVL
SIMHSCGTYDYSGQFAFKVGLPAKSGVSGGMMLVIPNVMGIFAWSPPLDH
LGNTVRGLQFCEELVSMFNFHRYDNLKHLSNKKDPRKHRYETKGLSIVNL
LFSAASGDVTALRRHRLSGMDITLADYDGRTALHLAASEGHLECVKFLLE
QCHVPHNPKDRWGNLPVDEAENFGHCHVVEFLRSWAEKADQSSEECKPEA
VTSKTQADEEICSTSDLETSPTTSPIPTPVESGSRAGSGRSSPVPSDAGS
TASAGSSIDDKTKPGLASFLDH
BO17365.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-PD | 716 | CG8772-PD | 1..716 | 1..716 | 3754 | 100 | Plus |
| CG42708-PA | 706 | CG8772-PA | 1..706 | 1..716 | 3678 | 98.6 | Plus |
| CG42708-PH | 775 | CG8772-PH | 1..696 | 1..710 | 3433 | 93.8 | Plus |
| CG42708-PC | 658 | CG8772-PC | 8..658 | 66..716 | 3431 | 100 | Plus |
| CG42708-PE | 648 | CG8772-PE | 8..648 | 66..716 | 3355 | 98.5 | Plus |
| CG42708-PH | 775 | CG8772-PH | 718..775 | 659..716 | 290 | 98.3 | Plus |
