Clone BO17366 Report

Search the DGRC for BO17366

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:66
Vector:pDNR-Dual
Associated Gene/TranscripteIF4E-4-RA
Protein status:BO17366.pep: validated full length
Sequenced Size:721

Clone Sequence Records

BO17366.3prime Sequence

633 bp (553 high quality bases) assembled on 2006-10-13

> BO17366.3prime
ATGGTCTAGAAAGCTTGCCACGCAATAAACCGCTTTGATCACCGATCCCT
GCTTGCACATAGTGTCCTTGTGCAGCTGGTACTGCAGTTGGTGGGGCGGA
AGGACGAGCAGGTCGCGTAACTTGAGTCCAATCTCCATGACGGCCAGCTC
GTTGTGCCCGTTGGCGGTCCAAATCGAAATTTTGTTGCTCTTCCCGCGCA
AGTTGATAACGGCGCCGCAGACTTCCTCGGTGTTTTCAAAGGCCTCGCCA
ATCAGTATGAGTAGCACATCTAACCAAAGCTTGTCGAGCTCCGCTTTGGA
GCCACGCCCCATATTGATGACCCAACGGCCGCCGAACTTGTTCGCATCAT
CCTCCCACATTGGCTGAATGCCCTTCTTGAACAAAGAATAATCGCTGCCC
ACTCTAATCTCAGATGGCTGCTTAATGTGATTGTAGAGACTCCAGAAGTC
CTCGACCATGTCAAAGCTAGTAATCTCGTTCTGCATGTCCTCCCAGTTCT
TGCTGCGATCATTCTCCAAGTACCACAGTGTCCAAGTGTTCTCTAGCGGA
TGCTTAAGGCGCAAATCAACAATCTCCGTTACGGGCTTGCGAATATCCAT
ATCCGAAAGCGTTTCAGATCCTCGCTGGAACTC

BO17366.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10124-PA 690 CG10124-RA 92..687 614..19 2955 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-4-RA 1031 CG10124-RA 206..821 633..19 3040 99.7 Minus
eIF-4E-RI 1793 CG4035-RI 1020..1510 534..47 500 74.1 Minus
eIF-4E-RH 1492 CG4035-RH 719..1209 534..47 500 74.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6665166..6665436 364..633 1305 99.6 Plus
3L 28110227 3L 6664434..6664591 19..176 775 99.4 Plus
3L 28110227 3L 6665015..6665114 265..364 500 100 Plus
3L 28110227 3L 6664847..6664935 177..265 445 100 Plus
3L 28110227 3L 9400584..9400752 366..534 290 78.1 Plus
X 23542271 X 1159150..1159337 347..534 235 75 Plus
Blast to na_te.dros performed on 2015-02-11 17:43:45 has no hits.

BO17366.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:02 Download gff for BO17366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10124-PA 72..690 15..633 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:50 Download gff for BO17366.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 206..831 8..633 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:49 Download gff for BO17366.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 206..831 8..633 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:49 Download gff for BO17366.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6664424..6664591 8..176 97 <- Plus
3L 6664847..6664934 177..264 100 <- Plus
3L 6665015..6665114 265..364 100 <- Plus
3L 6665167..6665436 365..633 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:50 Download gff for BO17366.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6657524..6657691 8..176 97 <- Plus
arm_3L 6657947..6658034 177..264 100 <- Plus
arm_3L 6658115..6658214 265..364 100 <- Plus
arm_3L 6658267..6658536 365..633 99   Plus

BO17366.5prime Sequence

716 bp (588 high quality bases) assembled on 2006-10-13

> BO17366.5prime
GAAGTTATCAGTCGACATGCTGACGACCCAGCAGACCGAATTCAAGATGA
TGGACAACGGCACCGAGACGCTGGCCGATTCTCCTTCGAGTTCCAGCGAG
GATCTGAAAACGCTTTCGGATATGGATATTCGCAAGCCCGTAACGGAGAT
TGTTGATTTGCGCCTTAAGCATCCGCTAGAGAACACTTGGACACTGTGGT
ACTTGGAGAATGATCGCAGCAAGAACTGGGAGGACATGCAGAACGAGATT
ACTAGCTTTGACATGGTCGAGGACTTCTGGAGTCTCTACAATCACATTAA
GCAGCCATCTGAGATTAGAGTGGGCAGCGATTATTCTTTGTTCAAGAAGG
GCATTCAGCCAATGTGGGAGGATGATGCGAACAAGTTCGGCGGCCGTTGG
GTCATCAATATGGGGCGTGGCTCCAAAGCGGAGCTCGACAAGCTTTGGTT
AGATGTGCTACTCATACTGATTGGCGAGGCCTTTGAAAACACCGAGGAAG
TCTGCGGCGCCGTTATCAACTTGCGCGGGAAGAGCAACAAAATTTCGATT
TGGACCGCCAACGGGCACAACGAGCTGGCCGTCATGGAGATTGGACTCAA
GTTACGCGACCTGCTCGTCCTTCCCGCCCACCAACTGCAGTACCAGCTGC
ACAAGGACACTATGTGCAAGCAGGGATCGGTGATCAAAGCGGGTTATTGC
GTGGCAAGCTTTCTAG

BO17366.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10124-PA 690 CG10124-RA 1..687 17..703 3335 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-4-RA 1031 CG10124-RA 134..821 16..703 3380 99.4 Plus
eIF-4E-RI 1793 CG4035-RI 1020..1510 188..675 500 74.1 Plus
eIF-4E-RH 1492 CG4035-RH 719..1209 188..675 500 74.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6665166..6665508 358..16 1715 100 Minus
3L 28110227 3L 6664434..6664591 703..546 730 97.5 Minus
3L 28110227 3L 6665015..6665114 457..358 500 100 Minus
3L 28110227 3L 6664847..6664935 545..457 445 100 Minus
3L 28110227 3L 9400584..9400752 356..188 290 78.1 Minus
X 23542271 X 1159150..1159337 375..188 235 75 Minus
Blast to na_te.dros performed on 2015-02-06 10:37:26 has no hits.

BO17366.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:04 Download gff for BO17366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10124-PA 1..690 17..707 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:34 Download gff for BO17366.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 124..831 6..714 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:50 Download gff for BO17366.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 124..831 6..714 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:50 Download gff for BO17366.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6664424..6664591 546..714 95 <- Minus
3L 6664847..6664934 458..545 100 <- Minus
3L 6665015..6665114 358..457 100 <- Minus
3L 6665167..6665518 6..357 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:34 Download gff for BO17366.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6657524..6657691 546..714 95 <- Minus
arm_3L 6657947..6658034 458..545 100 <- Minus
arm_3L 6658115..6658214 358..457 100 <- Minus
arm_3L 6658267..6658618 6..357 98   Minus

BO17366.complete Sequence

721 bp assembled on 2006-10-11

GenBank Submission: FJ634093

> BO17366.complete
GAAGTTATCAGTCGACATGCTGACGACCCAGCAGACCGAATTCAAGATGA
TGGACAACGGCACCGAGACGCTGGCCGATTCTCCTTCGAGTTCCAGCGAG
GATCTGAAAACGCTTTCGGATATGGATATTCGCAAGCCCGTAACGGAGAT
TGTTGATTTGCGCCTTAAGCATCCGCTAGAGAACACTTGGACACTGTGGT
ACTTGGAGAATGATCGCAGCAAGAACTGGGAGGACATGCAGAACGAGATT
ACTAGCTTTGACATGGTCGAGGACTTCTGGAGTCTCTACAATCACATTAA
GCAGCCATCTGAGATTAGAGTGGGCAGCGATTATTCTTTGTTCAAGAAGG
GCATTCAGCCAATGTGGGAGGATGATGCGAACAAGTTCGGCGGCCGTTGG
GTCATCAATATGGGGCGTGGCTCCAAAGCGGAGCTCGACAAGCTTTGGTT
AGATGTGCTACTCATACTGATTGGCGAGGCCTTTGAAAACACCGAGGAAG
TCTGCGGCGCCGTTATCAACTTGCGCGGGAAGAGCAACAAAATTTCGATT
TGGACCGCCAACGGGCACAACGAGCTGGCCGTCATGGAGATTGGACTCAA
GTTACGCGACCTGCTCGTCCTTCCGCCCCACCAACTGCAGTACCAGCTGC
ACAAGGACACTATGTGCAAGCAGGGATCGGTGATCAAAGCGGTTTATTGC
GTGGCAAGCTTTCTAGACCAT

BO17366.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-4-RA 690 CG10124-PA 1..687 17..703 3420 99.9 Plus
eIF-4E-RI 780 CG4035-PI 259..680 188..609 490 74.4 Plus
eIF-4E-RH 780 CG4035-PH 259..680 188..609 490 74.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-4-RA 1031 CG10124-RA 134..821 16..703 3425 99.9 Plus
eIF-4E-RI 1793 CG4035-RI 1020..1441 188..609 490 74.4 Plus
eIF-4E-RH 1492 CG4035-RH 719..1140 188..609 490 74.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6665166..6665508 358..16 1715 100 Minus
3L 28110227 3L 6664434..6664591 703..546 775 99.4 Minus
3L 28110227 3L 6665015..6665114 457..358 500 100 Minus
3L 28110227 3L 6664847..6664935 545..457 445 100 Minus
3L 28110227 3L 9400584..9400752 356..188 290 78.1 Minus
X 23542271 X 1159150..1159337 375..188 235 75 Minus
Blast to na_te.dros performed on 2014-11-27 06:49:14 has no hits.

BO17366.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:20 Download gff for BO17366.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 1..690 17..707 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:27 Download gff for BO17366.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 124..831 6..714 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:20 Download gff for BO17366.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 135..821 17..705 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:20 Download gff for BO17366.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 124..831 6..714 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:13 Download gff for BO17366.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 135..821 17..705 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:13 Download gff for BO17366.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6664432..6664591 546..705 98 <- Minus
3L 6664847..6664934 458..545 100 <- Minus
3L 6665015..6665114 358..457 100 <- Minus
3L 6665167..6665507 17..357 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:20 Download gff for BO17366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6658267..6658607 17..357 100   Minus
arm_3L 6657532..6657691 546..705 98 <- Minus
arm_3L 6657947..6658034 458..545 100 <- Minus
arm_3L 6658115..6658214 358..457 100 <- Minus

BO17366.pep Sequence

Translation from 16 to 721

> BO17366.pep
MLTTQQTEFKMMDNGTETLADSPSSSSEDLKTLSDMDIRKPVTEIVDLRL
KHPLENTWTLWYLENDRSKNWEDMQNEITSFDMVEDFWSLYNHIKQPSEI
RVGSDYSLFKKGIQPMWEDDANKFGGRWVINMGRGSKAELDKLWLDVLLI
LIGEAFENTEEVCGAVINLRGKSNKISIWTANGHNELAVMEIGLKLRDLL
VLPPHQLQYQLHKDTMCKQGSVIKAVYCVASFLDH

BO17366.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-4-PA 229 CG10124-PA 1..229 1..229 1216 100 Plus
eIF-4E-PC 248 CG4035-PC 69..246 51..227 724 74.7 Plus
eIF-4E-PI 259 CG4035-PI 80..257 51..227 724 74.7 Plus
eIF-4E-PH 259 CG4035-PH 80..257 51..227 724 74.7 Plus
eIF-4E-PD 259 CG4035-PD 80..257 51..227 724 74.7 Plus