Clone Sequence Records
BO17366.3prime Sequence
633 bp (553 high quality bases) assembled on 2006-10-13
> BO17366.3prime
ATGGTCTAGAAAGCTTGCCACGCAATAAACCGCTTTGATCACCGATCCCT
GCTTGCACATAGTGTCCTTGTGCAGCTGGTACTGCAGTTGGTGGGGCGGA
AGGACGAGCAGGTCGCGTAACTTGAGTCCAATCTCCATGACGGCCAGCTC
GTTGTGCCCGTTGGCGGTCCAAATCGAAATTTTGTTGCTCTTCCCGCGCA
AGTTGATAACGGCGCCGCAGACTTCCTCGGTGTTTTCAAAGGCCTCGCCA
ATCAGTATGAGTAGCACATCTAACCAAAGCTTGTCGAGCTCCGCTTTGGA
GCCACGCCCCATATTGATGACCCAACGGCCGCCGAACTTGTTCGCATCAT
CCTCCCACATTGGCTGAATGCCCTTCTTGAACAAAGAATAATCGCTGCCC
ACTCTAATCTCAGATGGCTGCTTAATGTGATTGTAGAGACTCCAGAAGTC
CTCGACCATGTCAAAGCTAGTAATCTCGTTCTGCATGTCCTCCCAGTTCT
TGCTGCGATCATTCTCCAAGTACCACAGTGTCCAAGTGTTCTCTAGCGGA
TGCTTAAGGCGCAAATCAACAATCTCCGTTACGGGCTTGCGAATATCCAT
ATCCGAAAGCGTTTCAGATCCTCGCTGGAACTC
BO17366.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10124-PA | 690 | CG10124-RA | 92..687 | 614..19 | 2955 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-4-RA | 1031 | CG10124-RA | 206..821 | 633..19 | 3040 | 99.7 | Minus |
eIF-4E-RI | 1793 | CG4035-RI | 1020..1510 | 534..47 | 500 | 74.1 | Minus |
eIF-4E-RH | 1492 | CG4035-RH | 719..1209 | 534..47 | 500 | 74.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6665166..6665436 | 364..633 | 1305 | 99.6 | Plus |
3L | 28110227 | 3L | 6664434..6664591 | 19..176 | 775 | 99.4 | Plus |
3L | 28110227 | 3L | 6665015..6665114 | 265..364 | 500 | 100 | Plus |
3L | 28110227 | 3L | 6664847..6664935 | 177..265 | 445 | 100 | Plus |
3L | 28110227 | 3L | 9400584..9400752 | 366..534 | 290 | 78.1 | Plus |
X | 23542271 | X | 1159150..1159337 | 347..534 | 235 | 75 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:43:45 has no hits.
BO17366.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:02 Download gff for
BO17366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10124-PA | 72..690 | 15..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:50 Download gff for
BO17366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 206..831 | 8..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:49 Download gff for
BO17366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 206..831 | 8..633 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:49 Download gff for
BO17366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6664424..6664591 | 8..176 | 97 | <- | Plus |
3L | 6664847..6664934 | 177..264 | 100 | <- | Plus |
3L | 6665015..6665114 | 265..364 | 100 | <- | Plus |
3L | 6665167..6665436 | 365..633 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:50 Download gff for
BO17366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6657524..6657691 | 8..176 | 97 | <- | Plus |
arm_3L | 6657947..6658034 | 177..264 | 100 | <- | Plus |
arm_3L | 6658115..6658214 | 265..364 | 100 | <- | Plus |
arm_3L | 6658267..6658536 | 365..633 | 99 | | Plus |
BO17366.5prime Sequence
716 bp (588 high quality bases) assembled on 2006-10-13
> BO17366.5prime
GAAGTTATCAGTCGACATGCTGACGACCCAGCAGACCGAATTCAAGATGA
TGGACAACGGCACCGAGACGCTGGCCGATTCTCCTTCGAGTTCCAGCGAG
GATCTGAAAACGCTTTCGGATATGGATATTCGCAAGCCCGTAACGGAGAT
TGTTGATTTGCGCCTTAAGCATCCGCTAGAGAACACTTGGACACTGTGGT
ACTTGGAGAATGATCGCAGCAAGAACTGGGAGGACATGCAGAACGAGATT
ACTAGCTTTGACATGGTCGAGGACTTCTGGAGTCTCTACAATCACATTAA
GCAGCCATCTGAGATTAGAGTGGGCAGCGATTATTCTTTGTTCAAGAAGG
GCATTCAGCCAATGTGGGAGGATGATGCGAACAAGTTCGGCGGCCGTTGG
GTCATCAATATGGGGCGTGGCTCCAAAGCGGAGCTCGACAAGCTTTGGTT
AGATGTGCTACTCATACTGATTGGCGAGGCCTTTGAAAACACCGAGGAAG
TCTGCGGCGCCGTTATCAACTTGCGCGGGAAGAGCAACAAAATTTCGATT
TGGACCGCCAACGGGCACAACGAGCTGGCCGTCATGGAGATTGGACTCAA
GTTACGCGACCTGCTCGTCCTTCCCGCCCACCAACTGCAGTACCAGCTGC
ACAAGGACACTATGTGCAAGCAGGGATCGGTGATCAAAGCGGGTTATTGC
GTGGCAAGCTTTCTAG
BO17366.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10124-PA | 690 | CG10124-RA | 1..687 | 17..703 | 3335 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-4-RA | 1031 | CG10124-RA | 134..821 | 16..703 | 3380 | 99.4 | Plus |
eIF-4E-RI | 1793 | CG4035-RI | 1020..1510 | 188..675 | 500 | 74.1 | Plus |
eIF-4E-RH | 1492 | CG4035-RH | 719..1209 | 188..675 | 500 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6665166..6665508 | 358..16 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 6664434..6664591 | 703..546 | 730 | 97.5 | Minus |
3L | 28110227 | 3L | 6665015..6665114 | 457..358 | 500 | 100 | Minus |
3L | 28110227 | 3L | 6664847..6664935 | 545..457 | 445 | 100 | Minus |
3L | 28110227 | 3L | 9400584..9400752 | 356..188 | 290 | 78.1 | Minus |
X | 23542271 | X | 1159150..1159337 | 375..188 | 235 | 75 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:37:26 has no hits.
BO17366.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:04 Download gff for
BO17366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10124-PA | 1..690 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:34 Download gff for
BO17366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 124..831 | 6..714 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:50 Download gff for
BO17366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 124..831 | 6..714 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:50 Download gff for
BO17366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6664424..6664591 | 546..714 | 95 | <- | Minus |
3L | 6664847..6664934 | 458..545 | 100 | <- | Minus |
3L | 6665015..6665114 | 358..457 | 100 | <- | Minus |
3L | 6665167..6665518 | 6..357 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:34 Download gff for
BO17366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6657524..6657691 | 546..714 | 95 | <- | Minus |
arm_3L | 6657947..6658034 | 458..545 | 100 | <- | Minus |
arm_3L | 6658115..6658214 | 358..457 | 100 | <- | Minus |
arm_3L | 6658267..6658618 | 6..357 | 98 | | Minus |
BO17366.complete Sequence
721 bp assembled on 2006-10-11
GenBank Submission: FJ634093
> BO17366.complete
GAAGTTATCAGTCGACATGCTGACGACCCAGCAGACCGAATTCAAGATGA
TGGACAACGGCACCGAGACGCTGGCCGATTCTCCTTCGAGTTCCAGCGAG
GATCTGAAAACGCTTTCGGATATGGATATTCGCAAGCCCGTAACGGAGAT
TGTTGATTTGCGCCTTAAGCATCCGCTAGAGAACACTTGGACACTGTGGT
ACTTGGAGAATGATCGCAGCAAGAACTGGGAGGACATGCAGAACGAGATT
ACTAGCTTTGACATGGTCGAGGACTTCTGGAGTCTCTACAATCACATTAA
GCAGCCATCTGAGATTAGAGTGGGCAGCGATTATTCTTTGTTCAAGAAGG
GCATTCAGCCAATGTGGGAGGATGATGCGAACAAGTTCGGCGGCCGTTGG
GTCATCAATATGGGGCGTGGCTCCAAAGCGGAGCTCGACAAGCTTTGGTT
AGATGTGCTACTCATACTGATTGGCGAGGCCTTTGAAAACACCGAGGAAG
TCTGCGGCGCCGTTATCAACTTGCGCGGGAAGAGCAACAAAATTTCGATT
TGGACCGCCAACGGGCACAACGAGCTGGCCGTCATGGAGATTGGACTCAA
GTTACGCGACCTGCTCGTCCTTCCGCCCCACCAACTGCAGTACCAGCTGC
ACAAGGACACTATGTGCAAGCAGGGATCGGTGATCAAAGCGGTTTATTGC
GTGGCAAGCTTTCTAGACCAT
BO17366.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-4-RA | 690 | CG10124-PA | 1..687 | 17..703 | 3420 | 99.9 | Plus |
eIF-4E-RI | 780 | CG4035-PI | 259..680 | 188..609 | 490 | 74.4 | Plus |
eIF-4E-RH | 780 | CG4035-PH | 259..680 | 188..609 | 490 | 74.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-4-RA | 1031 | CG10124-RA | 134..821 | 16..703 | 3425 | 99.9 | Plus |
eIF-4E-RI | 1793 | CG4035-RI | 1020..1441 | 188..609 | 490 | 74.4 | Plus |
eIF-4E-RH | 1492 | CG4035-RH | 719..1140 | 188..609 | 490 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6665166..6665508 | 358..16 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 6664434..6664591 | 703..546 | 775 | 99.4 | Minus |
3L | 28110227 | 3L | 6665015..6665114 | 457..358 | 500 | 100 | Minus |
3L | 28110227 | 3L | 6664847..6664935 | 545..457 | 445 | 100 | Minus |
3L | 28110227 | 3L | 9400584..9400752 | 356..188 | 290 | 78.1 | Minus |
X | 23542271 | X | 1159150..1159337 | 375..188 | 235 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:49:14 has no hits.
BO17366.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:20 Download gff for
BO17366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 1..690 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:27 Download gff for
BO17366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 124..831 | 6..714 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:20 Download gff for
BO17366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 135..821 | 17..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:20 Download gff for
BO17366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 124..831 | 6..714 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:13 Download gff for
BO17366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-4-RA | 135..821 | 17..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:13 Download gff for
BO17366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6664432..6664591 | 546..705 | 98 | <- | Minus |
3L | 6664847..6664934 | 458..545 | 100 | <- | Minus |
3L | 6665015..6665114 | 358..457 | 100 | <- | Minus |
3L | 6665167..6665507 | 17..357 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:20 Download gff for
BO17366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6658267..6658607 | 17..357 | 100 | | Minus |
arm_3L | 6657532..6657691 | 546..705 | 98 | <- | Minus |
arm_3L | 6657947..6658034 | 458..545 | 100 | <- | Minus |
arm_3L | 6658115..6658214 | 358..457 | 100 | <- | Minus |
BO17366.pep Sequence
Translation from 16 to 721
> BO17366.pep
MLTTQQTEFKMMDNGTETLADSPSSSSEDLKTLSDMDIRKPVTEIVDLRL
KHPLENTWTLWYLENDRSKNWEDMQNEITSFDMVEDFWSLYNHIKQPSEI
RVGSDYSLFKKGIQPMWEDDANKFGGRWVINMGRGSKAELDKLWLDVLLI
LIGEAFENTEEVCGAVINLRGKSNKISIWTANGHNELAVMEIGLKLRDLL
VLPPHQLQYQLHKDTMCKQGSVIKAVYCVASFLDH
BO17366.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-4-PA | 229 | CG10124-PA | 1..229 | 1..229 | 1216 | 100 | Plus |
eIF-4E-PC | 248 | CG4035-PC | 69..246 | 51..227 | 724 | 74.7 | Plus |
eIF-4E-PI | 259 | CG4035-PI | 80..257 | 51..227 | 724 | 74.7 | Plus |
eIF-4E-PH | 259 | CG4035-PH | 80..257 | 51..227 | 724 | 74.7 | Plus |
eIF-4E-PD | 259 | CG4035-PD | 80..257 | 51..227 | 724 | 74.7 | Plus |