Clone Sequence Records
BO17367.3prime Sequence
694 bp (692 high quality bases) assembled on 2006-10-13
> BO17367.3prime
ATGGTCTAGAAAGCTTGCGGCGAAGTCCCTGAACATGGTGAACAGGCTGT
ATAGGACGCGCAGGGTGGACTTGAGGTCCATGTTCACGATGTCCTCCGGC
CGCGCCTTTGGTTTGGGCAGGCCCACGTCCTGCATCAGGTCGAAGGCGAA
GGCCACGTTGCTGACCATCTGATCCACGTCCTGCGGCGTCAAATGGAACT
CGTGCAGCGGCACAAAGAATCCACCGAGCAGGCCCATCAGCAGGCACAGG
TATACGCCGTCGCGAAAGTCCGTGTTCAGATCGCTGATCTCAAAGTTCAG
CTTGGCCAGGTGCTTGTTCACGAACGTGATCAAGGACTTCTTCACCACGG
CCAGCTTGTCCGGCGCACAGTCGATCAGCGTGTCGAAGGCGTCCTTTTCG
CAGCGCATGCCCAGGTCGTCGTACTCGGACGTTATCTGCTCCTGGAACTT
CTGCGCGTTCAGCACGCCCGCATTCTTCTCCGCAATCACGACGGTCACGA
ACACGTTCTCTGGCAGGCGAACGGGCGCCCGGAAGTGACGCACCAGTGCC
ACCAGCAGATGTAATATGGCCACAATGTTCTTCGAGTGCACGCTGGCCAC
CGACCACTTGGGAATCTTTTGGTGAAAGCCGAGTGTATGGTTGACGGCCT
TCAGGACGATGTTGAGCTTCTCGTGCTGGCCCTGCTCTGACTGG
BO17367.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32528-PA | 1104 | CG32528-RA | 426..1101 | 694..19 | 3380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
parvin-RB | 1840 | CG32528-RB | 574..1249 | 694..19 | 3380 | 100 | Minus |
parvin-RA | 1801 | CG32528-RA | 535..1210 | 694..19 | 3380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19747250..19747867 | 636..19 | 3090 | 100 | Minus |
X | 23542271 | X | 19747025..19747082 | 694..637 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:09:46 has no hits.
BO17367.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:04 Download gff for
BO17367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32528-PA | 426..1104 | 16..694 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:04 Download gff for
BO17367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
parvin-RA | 558..1233 | 19..694 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:15 Download gff for
BO17367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
parvin-RA | 535..1210 | 19..694 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:15 Download gff for
BO17367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19747025..19747082 | 637..694 | 100 | -> | Minus |
X | 19747250..19747867 | 19..636 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:04 Download gff for
BO17367.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19641058..19641115 | 637..694 | 100 | -> | Minus |
arm_X | 19641283..19641900 | 19..636 | 100 | | Minus |
BO17367.5prime Sequence
720 bp (659 high quality bases) assembled on 2006-10-13
> BO17367.5prime
GAAGTTATCAGTCGACATGTCCACACTGAACCGCCCTAAATCCCCGCACA
CGCCCACCGCCATTAAAAAGGGCGAGAAGGAGGACAGCTTCTGGGACAAG
TTCAGCACTTTGGGCCGCAAACGCGGCACCCGCGAAGTGAAGAAGGTCCA
AGAGGAGGGCAAGTACGCCATCGACTCGCCTGGATCGCCCAGCCAGTATG
ACATCCCGCCGGAGGACTATGCCCTGCGCGAGCACGAACAGCGCGCCGTC
ATCGATCCACAGTCCATCAGTGATCCCCAGGTGATAAAGCTGCAGCGCAT
CCTCGTCGACTGGATCAACGACGAGCTGGCCGAGCAGCGCATAATTGTTC
AGCACCTGGAAGAGGACATGTATGACGGCCAGGTGCTGCACAAGCTGTGG
GAGAAGCTCACCGGCAAGAAGCTGGACGTTCCTGAGGTCACCCAGTCAGA
GCAGGGCCAGCACGAGAAGCTCAACATCGTCCTGAAGGCCGTCAACCATA
CACTCGGCTTTCACCAAAAGATTCCCAAGTGGTCGGTGGCCAGCGTGCAC
TCGAAGAACATTGTGGCCATATTACATCTGCTGGTGGCACTGGTGCGTCA
CTTCCGGGCGCCCGTTCGCCTGCCAGAGAACGTGTTCGTGACCGTCGTGA
TTGCGGAGAAGAATGCGGGCGTGCTGAACGCGCAGAAGTTCCAGGAGCAG
ATAACGTCCGAGTACGACGA
BO17367.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32528-PA | 1104 | CG32528-RA | 1..704 | 17..720 | 3520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
parvin-RB | 1840 | CG32528-RB | 148..852 | 16..720 | 3525 | 100 | Plus |
parvin-RA | 1801 | CG32528-RA | 109..813 | 16..720 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19746811..19747082 | 228..499 | 1360 | 100 | Plus |
X | 23542271 | X | 19747250..19747470 | 500..720 | 1105 | 100 | Plus |
X | 23542271 | X | 19746188..19746309 | 16..137 | 610 | 100 | Plus |
X | 23542271 | X | 19746640..19746732 | 136..228 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:14:07 has no hits.
BO17367.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:05 Download gff for
BO17367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32528-PA | 1..703 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:23 Download gff for
BO17367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
parvin-RA | 126..835 | 9..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:29:28 Download gff for
BO17367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
parvin-RA | 103..812 | 9..719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:29:28 Download gff for
BO17367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19746185..19746309 | 11..137 | 96 | -> | Plus |
X | 19746642..19746731 | 138..227 | 100 | -> | Plus |
X | 19746811..19747082 | 228..499 | 100 | -> | Plus |
X | 19747250..19747469 | 500..719 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:23 Download gff for
BO17367.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19640218..19640342 | 11..137 | 96 | -> | Plus |
arm_X | 19640675..19640764 | 138..227 | 100 | -> | Plus |
arm_X | 19640844..19641115 | 228..499 | 100 | -> | Plus |
arm_X | 19641283..19641502 | 500..719 | 100 | | Plus |
BO17367.complete Sequence
1135 bp assembled on 2006-10-11
GenBank Submission: FJ634094
> BO17367.complete
GAAGTTATCAGTCGACATGTCCACACTGAACCGCCCTAAATCCCCGCACA
CGCCCACCGCCATTAAAAAGGGCGAGAAGGAGGACAGCTTCTGGGACAAG
TTCAGCACTTTGGGCCGCAAACGCGGCACCCGCGAAGTGAAGAAGGTCCA
AGAGGAGGGCAAGTACGCCATCGACTCGCCTGGATCGCCCAGCCAGTATG
ACATCCCGCCGGAGGACTATGCCCTGCGCGAGCACGAACAGCGCGCCGTC
ATCGATCCACAGTCCATCAGTGATCCCCAGGTGATAAAGCTGCAGCGCAT
CCTCGTCGACTGGATCAACGACGAGCTGGCCGAGCAGCGCATAATTGTTC
AGCACCTGGAAGAGGACATGTATGACGGCCAGGTGCTGCACAAGCTGTGG
GAGAAGCTCACCGGCAAGAAGCTGGACGTTCCTGAGGTCACCCAGTCAGA
GCAGGGCCAGCACGAGAAGCTCAACATCGTCCTGAAGGCCGTCAACCATA
CACTCGGCTTTCACCAAAAGATTCCCAAGTGGTCGGTGGCCAGCGTGCAC
TCGAAGAACATTGTGGCCATATTACATCTGCTGGTGGCACTGGTGCGTCA
CTTCCGGGCGCCCGTTCGCCTGCCAGAGAACGTGTTCGTGACCGTCGTGA
TTGCGGAGAAGAATGCGGGCGTGCTGAACGCGCAGAAGTTCCAGGAGCAG
ATAACGTCCGAGTACGACGACCTGGGCATGCGCTGCGAAAAGGACGCCTT
CGACACGCTGATCGACTGTGCGCCGGACAAGCTGGCCGTGGTGAAGAAGT
CCTTGATCACGTTCGTGAACAAGCACCTGGCCAAGCTGAACTTTGAGATC
AGCGATCTGAACACGGACTTTCGCGACGGCGTATACCTGTGCCTGCTGAT
GGGCCTGCTCGGTGGATTCTTTGTGCCGCTGCACGAGTTCCATTTGACGC
CGCAGGACGTGGATCAGATGGTCAGCAACGTGGCCTTCGCCTTCGACCTG
ATGCAGGACGTGGGCCTGCCCAAACCAAAGGCGCGGCCGGAGGACATCGT
GAACATGGACCTCAAGTCCACCCTGCGCGTCCTATACAGCCTGTTCACCA
TGTTCAGGGACTTCGCCGCAAGCTTTCTAGACCAT
BO17367.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
parvin-RB | 1104 | CG32528-PB | 1..1101 | 17..1117 | 5505 | 100 | Plus |
parvin-RA | 1104 | CG32528-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
parvin-RB | 1840 | CG32528-RB | 148..1249 | 16..1117 | 5510 | 100 | Plus |
parvin-RA | 1801 | CG32528-RA | 109..1210 | 16..1117 | 5510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19747250..19747867 | 500..1117 | 3090 | 100 | Plus |
X | 23542271 | X | 19746811..19747082 | 228..499 | 1360 | 100 | Plus |
X | 23542271 | X | 19746188..19746309 | 16..137 | 610 | 100 | Plus |
X | 23542271 | X | 19746640..19746732 | 136..228 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:33:21 has no hits.
BO17367.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:21 Download gff for
BO17367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32528-RA | 1..1104 | 17..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:29 Download gff for
BO17367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32528-RA | 126..1233 | 9..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:19 Download gff for
BO17367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
parvin-RA | 133..1233 | 17..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:21 Download gff for
BO17367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32528-RA | 126..1233 | 9..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:10 Download gff for
BO17367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
parvin-RA | 110..1210 | 17..1119 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:10 Download gff for
BO17367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19746642..19746731 | 138..227 | 100 | -> | Plus |
X | 19746811..19747082 | 228..499 | 100 | -> | Plus |
X | 19746189..19746309 | 17..137 | 100 | -> | Plus |
X | 19747250..19747867 | 500..1119 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:19 Download gff for
BO17367.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19640222..19640342 | 17..137 | 100 | -> | Plus |
arm_X | 19640675..19640764 | 138..227 | 100 | -> | Plus |
arm_X | 19640844..19641115 | 228..499 | 100 | -> | Plus |
arm_X | 19641283..19641900 | 500..1119 | 99 | | Plus |
BO17367.pep Sequence
Translation from 16 to 1135
> BO17367.pep
MSTLNRPKSPHTPTAIKKGEKEDSFWDKFSTLGRKRGTREVKKVQEEGKY
AIDSPGSPSQYDIPPEDYALREHEQRAVIDPQSISDPQVIKLQRILVDWI
NDELAEQRIIVQHLEEDMYDGQVLHKLWEKLTGKKLDVPEVTQSEQGQHE
KLNIVLKAVNHTLGFHQKIPKWSVASVHSKNIVAILHLLVALVRHFRAPV
RLPENVFVTVVIAEKNAGVLNAQKFQEQITSEYDDLGMRCEKDAFDTLID
CAPDKLAVVKKSLITFVNKHLAKLNFEISDLNTDFRDGVYLCLLMGLLGG
FFVPLHEFHLTPQDVDQMVSNVAFAFDLMQDVGLPKPKARPEDIVNMDLK
STLRVLYSLFTMFRDFAASFLDH
BO17367.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
parvin-PB | 367 | CG32528-PB | 1..367 | 1..367 | 1904 | 100 | Plus |
parvin-PA | 367 | CG32528-PA | 1..367 | 1..367 | 1904 | 100 | Plus |