Clone BO17367 Report

Search the DGRC for BO17367

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:67
Vector:pDNR-Dual
Associated Gene/Transcriptparvin-RA
Protein status:BO17367.pep: validated full length
Sequenced Size:1135

Clone Sequence Records

BO17367.3prime Sequence

694 bp (692 high quality bases) assembled on 2006-10-13

> BO17367.3prime
ATGGTCTAGAAAGCTTGCGGCGAAGTCCCTGAACATGGTGAACAGGCTGT
ATAGGACGCGCAGGGTGGACTTGAGGTCCATGTTCACGATGTCCTCCGGC
CGCGCCTTTGGTTTGGGCAGGCCCACGTCCTGCATCAGGTCGAAGGCGAA
GGCCACGTTGCTGACCATCTGATCCACGTCCTGCGGCGTCAAATGGAACT
CGTGCAGCGGCACAAAGAATCCACCGAGCAGGCCCATCAGCAGGCACAGG
TATACGCCGTCGCGAAAGTCCGTGTTCAGATCGCTGATCTCAAAGTTCAG
CTTGGCCAGGTGCTTGTTCACGAACGTGATCAAGGACTTCTTCACCACGG
CCAGCTTGTCCGGCGCACAGTCGATCAGCGTGTCGAAGGCGTCCTTTTCG
CAGCGCATGCCCAGGTCGTCGTACTCGGACGTTATCTGCTCCTGGAACTT
CTGCGCGTTCAGCACGCCCGCATTCTTCTCCGCAATCACGACGGTCACGA
ACACGTTCTCTGGCAGGCGAACGGGCGCCCGGAAGTGACGCACCAGTGCC
ACCAGCAGATGTAATATGGCCACAATGTTCTTCGAGTGCACGCTGGCCAC
CGACCACTTGGGAATCTTTTGGTGAAAGCCGAGTGTATGGTTGACGGCCT
TCAGGACGATGTTGAGCTTCTCGTGCTGGCCCTGCTCTGACTGG

BO17367.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32528-PA 1104 CG32528-RA 426..1101 694..19 3380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
parvin-RB 1840 CG32528-RB 574..1249 694..19 3380 100 Minus
parvin-RA 1801 CG32528-RA 535..1210 694..19 3380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19747250..19747867 636..19 3090 100 Minus
X 23542271 X 19747025..19747082 694..637 290 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:09:46 has no hits.

BO17367.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:04 Download gff for BO17367.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32528-PA 426..1104 16..694 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:04 Download gff for BO17367.3prime
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 558..1233 19..694 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:15 Download gff for BO17367.3prime
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 535..1210 19..694 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:15 Download gff for BO17367.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19747025..19747082 637..694 100 -> Minus
X 19747250..19747867 19..636 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:04 Download gff for BO17367.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19641058..19641115 637..694 100 -> Minus
arm_X 19641283..19641900 19..636 100   Minus

BO17367.5prime Sequence

720 bp (659 high quality bases) assembled on 2006-10-13

> BO17367.5prime
GAAGTTATCAGTCGACATGTCCACACTGAACCGCCCTAAATCCCCGCACA
CGCCCACCGCCATTAAAAAGGGCGAGAAGGAGGACAGCTTCTGGGACAAG
TTCAGCACTTTGGGCCGCAAACGCGGCACCCGCGAAGTGAAGAAGGTCCA
AGAGGAGGGCAAGTACGCCATCGACTCGCCTGGATCGCCCAGCCAGTATG
ACATCCCGCCGGAGGACTATGCCCTGCGCGAGCACGAACAGCGCGCCGTC
ATCGATCCACAGTCCATCAGTGATCCCCAGGTGATAAAGCTGCAGCGCAT
CCTCGTCGACTGGATCAACGACGAGCTGGCCGAGCAGCGCATAATTGTTC
AGCACCTGGAAGAGGACATGTATGACGGCCAGGTGCTGCACAAGCTGTGG
GAGAAGCTCACCGGCAAGAAGCTGGACGTTCCTGAGGTCACCCAGTCAGA
GCAGGGCCAGCACGAGAAGCTCAACATCGTCCTGAAGGCCGTCAACCATA
CACTCGGCTTTCACCAAAAGATTCCCAAGTGGTCGGTGGCCAGCGTGCAC
TCGAAGAACATTGTGGCCATATTACATCTGCTGGTGGCACTGGTGCGTCA
CTTCCGGGCGCCCGTTCGCCTGCCAGAGAACGTGTTCGTGACCGTCGTGA
TTGCGGAGAAGAATGCGGGCGTGCTGAACGCGCAGAAGTTCCAGGAGCAG
ATAACGTCCGAGTACGACGA

BO17367.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32528-PA 1104 CG32528-RA 1..704 17..720 3520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
parvin-RB 1840 CG32528-RB 148..852 16..720 3525 100 Plus
parvin-RA 1801 CG32528-RA 109..813 16..720 3525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19746811..19747082 228..499 1360 100 Plus
X 23542271 X 19747250..19747470 500..720 1105 100 Plus
X 23542271 X 19746188..19746309 16..137 610 100 Plus
X 23542271 X 19746640..19746732 136..228 465 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:14:07 has no hits.

BO17367.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:05 Download gff for BO17367.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32528-PA 1..703 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:23 Download gff for BO17367.5prime
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 126..835 9..719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:29:28 Download gff for BO17367.5prime
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 103..812 9..719 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:29:28 Download gff for BO17367.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19746185..19746309 11..137 96 -> Plus
X 19746642..19746731 138..227 100 -> Plus
X 19746811..19747082 228..499 100 -> Plus
X 19747250..19747469 500..719 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:23 Download gff for BO17367.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19640218..19640342 11..137 96 -> Plus
arm_X 19640675..19640764 138..227 100 -> Plus
arm_X 19640844..19641115 228..499 100 -> Plus
arm_X 19641283..19641502 500..719 100   Plus

BO17367.complete Sequence

1135 bp assembled on 2006-10-11

GenBank Submission: FJ634094

> BO17367.complete
GAAGTTATCAGTCGACATGTCCACACTGAACCGCCCTAAATCCCCGCACA
CGCCCACCGCCATTAAAAAGGGCGAGAAGGAGGACAGCTTCTGGGACAAG
TTCAGCACTTTGGGCCGCAAACGCGGCACCCGCGAAGTGAAGAAGGTCCA
AGAGGAGGGCAAGTACGCCATCGACTCGCCTGGATCGCCCAGCCAGTATG
ACATCCCGCCGGAGGACTATGCCCTGCGCGAGCACGAACAGCGCGCCGTC
ATCGATCCACAGTCCATCAGTGATCCCCAGGTGATAAAGCTGCAGCGCAT
CCTCGTCGACTGGATCAACGACGAGCTGGCCGAGCAGCGCATAATTGTTC
AGCACCTGGAAGAGGACATGTATGACGGCCAGGTGCTGCACAAGCTGTGG
GAGAAGCTCACCGGCAAGAAGCTGGACGTTCCTGAGGTCACCCAGTCAGA
GCAGGGCCAGCACGAGAAGCTCAACATCGTCCTGAAGGCCGTCAACCATA
CACTCGGCTTTCACCAAAAGATTCCCAAGTGGTCGGTGGCCAGCGTGCAC
TCGAAGAACATTGTGGCCATATTACATCTGCTGGTGGCACTGGTGCGTCA
CTTCCGGGCGCCCGTTCGCCTGCCAGAGAACGTGTTCGTGACCGTCGTGA
TTGCGGAGAAGAATGCGGGCGTGCTGAACGCGCAGAAGTTCCAGGAGCAG
ATAACGTCCGAGTACGACGACCTGGGCATGCGCTGCGAAAAGGACGCCTT
CGACACGCTGATCGACTGTGCGCCGGACAAGCTGGCCGTGGTGAAGAAGT
CCTTGATCACGTTCGTGAACAAGCACCTGGCCAAGCTGAACTTTGAGATC
AGCGATCTGAACACGGACTTTCGCGACGGCGTATACCTGTGCCTGCTGAT
GGGCCTGCTCGGTGGATTCTTTGTGCCGCTGCACGAGTTCCATTTGACGC
CGCAGGACGTGGATCAGATGGTCAGCAACGTGGCCTTCGCCTTCGACCTG
ATGCAGGACGTGGGCCTGCCCAAACCAAAGGCGCGGCCGGAGGACATCGT
GAACATGGACCTCAAGTCCACCCTGCGCGTCCTATACAGCCTGTTCACCA
TGTTCAGGGACTTCGCCGCAAGCTTTCTAGACCAT

BO17367.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
parvin-RB 1104 CG32528-PB 1..1101 17..1117 5505 100 Plus
parvin-RA 1104 CG32528-PA 1..1101 17..1117 5505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
parvin-RB 1840 CG32528-RB 148..1249 16..1117 5510 100 Plus
parvin-RA 1801 CG32528-RA 109..1210 16..1117 5510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19747250..19747867 500..1117 3090 100 Plus
X 23542271 X 19746811..19747082 228..499 1360 100 Plus
X 23542271 X 19746188..19746309 16..137 610 100 Plus
X 23542271 X 19746640..19746732 136..228 465 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:33:21 has no hits.

BO17367.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:21 Download gff for BO17367.complete
Subject Subject Range Query Range Percent Splice Strand
CG32528-RA 1..1104 17..1120 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:29 Download gff for BO17367.complete
Subject Subject Range Query Range Percent Splice Strand
CG32528-RA 126..1233 9..1117 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:19 Download gff for BO17367.complete
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 133..1233 17..1119 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:21 Download gff for BO17367.complete
Subject Subject Range Query Range Percent Splice Strand
CG32528-RA 126..1233 9..1117 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:10 Download gff for BO17367.complete
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 110..1210 17..1119 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:10 Download gff for BO17367.complete
Subject Subject Range Query Range Percent Splice Strand
X 19746642..19746731 138..227 100 -> Plus
X 19746811..19747082 228..499 100 -> Plus
X 19746189..19746309 17..137 100 -> Plus
X 19747250..19747867 500..1119 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:19 Download gff for BO17367.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19640222..19640342 17..137 100 -> Plus
arm_X 19640675..19640764 138..227 100 -> Plus
arm_X 19640844..19641115 228..499 100 -> Plus
arm_X 19641283..19641900 500..1119 99   Plus

BO17367.pep Sequence

Translation from 16 to 1135

> BO17367.pep
MSTLNRPKSPHTPTAIKKGEKEDSFWDKFSTLGRKRGTREVKKVQEEGKY
AIDSPGSPSQYDIPPEDYALREHEQRAVIDPQSISDPQVIKLQRILVDWI
NDELAEQRIIVQHLEEDMYDGQVLHKLWEKLTGKKLDVPEVTQSEQGQHE
KLNIVLKAVNHTLGFHQKIPKWSVASVHSKNIVAILHLLVALVRHFRAPV
RLPENVFVTVVIAEKNAGVLNAQKFQEQITSEYDDLGMRCEKDAFDTLID
CAPDKLAVVKKSLITFVNKHLAKLNFEISDLNTDFRDGVYLCLLMGLLGG
FFVPLHEFHLTPQDVDQMVSNVAFAFDLMQDVGLPKPKARPEDIVNMDLK
STLRVLYSLFTMFRDFAASFLDH

BO17367.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
parvin-PB 367 CG32528-PB 1..367 1..367 1904 100 Plus
parvin-PA 367 CG32528-PA 1..367 1..367 1904 100 Plus