Clone Sequence Records
BO17370.3prime Sequence
789 bp (685 high quality bases) assembled on 2006-10-13
> BO17370.3prime
ATGGTCTAGAAAGCTTGCGCTTTCGGCATTGGAAGAGAACGTGCGCCAAT
TGTCCGATCGCCACTGGCAGCGTGTGTCCAGGTGGCGCAACTTGATCTCT
GCGTAGATCTTTTCGAAATGAGGAGCCGCCTTGCGAGCACTTTCGGCCAG
GATCTCAAACCAGATGGCCTCACTGAGTTCGGTGCTGGTGTGGCACATAG
AGATGCGCGTGCATCCGAGGATACGTTCTCGGAACTGACGCACCAGTTCG
CCGAGGCAGGAATGGAAAGCGGTGGCTTTGTTGCTACTCACCTCCGGCAG
GAGGAAGGTGTTTAAGCACCGTGCATCGCCTCTTCCCCGGTATATGGGCA
GCCCCGTCGGCCCGTATAAGTAGGCCAACTTTTTGTCCAGTCGTTCCCGC
TGCTGTATCTCAAAGTCTATTCGATGGGCACGCGCGCGGACGAATACTAC
CTGCGGCATGTGATCCCGTACATAGCCTTTGCAATGAAGCGTCGGTCTCA
GGCGAAGGGCAGCGTTTATCAGACGCAATTGTTCCAAGGCCAAGCCATCG
ATGACTAAAATTAATATATGGCATACACTCAACAGTTGCGCCATGGTGCC
CAGGGAGTAAAGATCCTGGTGATCCGAGTCCTTGCCTACAGGCATTAACG
GTGGTGTGTCCAGCAGTATGTGACGTTCCCGGGTGATAAAAAACTGCAGG
GTTTCCGTGCGAGGACGCAAAATGCTCTTCTGCCCATTGTTCGGCTTCAA
CTTGTGACGCGTGGCAAAGATGCATTCATCCGCCTCTGG
BO17370.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-PA | 1464 | CG3857-RA | 691..1461 | 789..19 | 3855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-RA | 2341 | CG3857-RA | 777..1547 | 789..19 | 3855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1938494..1939264 | 19..789 | 3855 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 18:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader6 | 4885 | invader6 INVADER6 4885bp | 3429..3477 | 163..115 | 110 | 69.4 | Minus |
BO17370.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:09 Download gff for
BO17370.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-PA | 691..1464 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:51 Download gff for
BO17370.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 777..1547 | 19..789 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:14 Download gff for
BO17370.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 777..1547 | 19..789 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:14 Download gff for
BO17370.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1938494..1939264 | 19..789 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:51 Download gff for
BO17370.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1832527..1833297 | 19..789 | 100 | | Plus |
BO17370.5prime Sequence
834 bp (739 high quality bases) assembled on 2006-10-13
> BO17370.5prime
GAAGTTATCAGTCGACATGGCTGATCCCCGTCGTCGTTTCCGTAACAAAA
AGCGGGATGAAGCCTGCTCCGGCCTCCTGGCACCCGTGACCATCGCCCGG
CGCGAGGACGCCGCCCGCATGATGCAGCCAAAAATTCTGCTAAAGAAGGA
TCGCGATCGGGAGCAAGAGACCTGGGACAGAGAGCGGGACAAGGATAGGA
AGCTGGAGAGGGACAGGGAGGCGGAGCCAAGTCCCAGTTGTTACCCCGAT
ACACCGCCGGCCCTCAAAACGATGATCGTCAATCGTACGGGTGAGGTGCG
GCCTGCAGACAGATGCCAGATGCCTTTGGCCGGAGGTGCTCTTGTCCAGG
GAAGCGGGCAATTGTCCGCCGTGCCATCCAGCTCCGTTTGCGCCGCATTG
GTTAGCTCGGTACCAACTAGCAGGGACAAGGGGAGCTGCAGTGGTGGTGC
CGGAACAGCTGGCACCTCGGCCGGAGCACCGAATGCTCTCCAGGAGCTGC
AGCCGCCACGCATGAACCGTCCCACACCCCTAATCGTGGCCAATGGTATT
TTTAATGCCAATGCCCGCAAGCTCTTCCACAAAACCAATACGGACTTCAC
CGTAATCGGGGTCCTGGGTGGTCAGAGTTCCGGAAAAAGCACGCTGCTCA
ATCTTCTGGCCGCAGAGCGGTCCCTGGACTACGACTACTATCAACATCTA
TTCTCTCCAGAGGCGGATGAATGCATCTTTGCCACGCGTCACAAGTTGAA
GCCGAACAATGGGCAGAAGAGCATTTTGCGTCCTCGCACGGAAACCCTGC
AGTTTTTATCACCGGGAACGTCACATACTGCTGG
BO17370.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-PA | 1464 | CG3857-RA | 1..791 | 17..807 | 3955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-RA | 2341 | CG3857-RA | 87..906 | 17..834 | 4050 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1939135..1939954 | 834..17 | 4000 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:23:34 has no hits.
BO17370.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:10 Download gff for
BO17370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-PA | 1..820 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:24 Download gff for
BO17370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 82..906 | 8..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:16 Download gff for
BO17370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 82..906 | 8..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:16 Download gff for
BO17370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1939135..1939959 | 8..834 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:24 Download gff for
BO17370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1833168..1833992 | 8..834 | 99 | | Minus |
BO17370.complete Sequence
1495 bp assembled on 2006-10-11
GenBank Submission: FJ634095
> BO17370.complete
GAAGTTATCAGTCGACATGGCTGATCCCCGTCGTCGTTTCCGTAACAAAA
AGCGGGATGAAGCCTGCTCCGGCCTCCTGGCACCCGTGACCATCGCCCGG
CGCGAGGACGCCGCCCGCATGATGCAGCCAAAAATTCTGCTAAAGAAGGA
TCGCGATCGGGAGCAAGAGACCTGGGACAGAGAGCGGGACAAGGATAGGA
AGCTGGAGAGGGACAGGGAGGCGGAGCCAAGTCCCAGTTGTTACCCCGAT
ACACCGCCGGCCCTCAAAACGATGATCGTCAATCGTACGGGTGAGGTGCG
GCCTGCAGACAGATGCCAGATGCCTTTGGCCGGAGGTGCTCTTGTCCAGG
GAAGCGGGCAATTGTCCGCCGTGCCATCCAGCTCCGTTTGCGCCGCATTG
GTTAGCTCGGTACCAACTAGCAGGGACAAGGGGAGCTGCAGTGGTGGTGC
CGGAACAGCTGGCACCTCGGCCGGAGCACCGAATGCTCTCCAGGAGCTGC
AGCCGCCACGCATGAACCGTCCCACACCCCTAATCGTGGCCAATGGTATT
TTTAATGCCAATGCCCGCAAGCTCTTCCACAAAACCAATACGGACTTCAC
CGTAATCGGGGTCCTGGGTGGTCAGAGTTCCGGAAAAAGCACGCTGCTCA
ATCTTCTGGCCGCAGAGCGGTCCCTGGACTACGACTACTATCAACATCTA
TTCTCTCCAGAGGCGGATGAATGCATCTTTGCCACGCGTCACAAGTTGAA
GCCGAACAATGGGCAGAAGAGCATTTTGCGTCCTCGCACGGAAACCCTGC
AGTTTTTTATCACCCGGGAACGTCACATACTGCTGGACACACCACCGTTA
ATGCCTGTAGGCAAGGACTCGGATCACCAGGATCTTTACTCCCTGGGCAC
CATGGCGCAACTGTTGAGTGTATGCCATATATTAATTTTAGTCATCGATG
GCTTGGCCTTGGAACAATTGCGTCTGATAAACGCTGCCCTTCGCCTGAGA
CCGACGCTTCATTGCAAAGGCTATGTACGGGATCACATGCCGCAGGTAGT
ATTCGTCCGCGCGCGTGCCCATCGAATAGACTTTGAGATACAGCAGCGGG
AACGACTGGACAAAAAGTTGGCCTACTTATACGGGCCGACGGGGCTGCCC
ATATACCGGGGAAGAGGCGATGCACGGTGCTTAAACACCTTCCTCCTGCC
GGAGGTGAGTAGCAACAAAGCCACCGCTTTCCATTCCTGCCTCGGCGAAC
TGGTGCGTCAGTTCCGAGAACGTATCCTCGGATGCACGCGCATCTCTATG
TGCCACACCAGCACCGAACTCAGTGAGGCCATCTGGTTTGAGATCCTGGC
CGAAAGTGCTCGCAAGGCGGCTCCTCATTTCGAAAAGATCTACGCAGAGA
TCAAGTTGCGCCACCTGGACACACGCTGCCAGTGGCGATCGGACAATTGG
CGCACGTTCTCTTCCAATGCCGAAAGCGCAAGCTTTCTAGACCAT
BO17370.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-RA | 1464 | CG3857-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-RA | 2341 | CG3857-RA | 87..1547 | 17..1477 | 7305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1938494..1939954 | 1477..17 | 7305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:00:47 has no hits.
BO17370.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:22 Download gff for
BO17370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 1..1464 | 17..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:30 Download gff for
BO17370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 49..1514 | 8..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:00 Download gff for
BO17370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 87..1547 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:22 Download gff for
BO17370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 49..1514 | 8..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:38 Download gff for
BO17370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3857-RA | 87..1547 | 17..1479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:38 Download gff for
BO17370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1938491..1939954 | 17..1479 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:00 Download gff for
BO17370.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1832524..1833987 | 17..1479 | 99 | | Minus |
BO17370.pep Sequence
Translation from 16 to 1495
> BO17370.pep
MADPRRRFRNKKRDEACSGLLAPVTIARREDAARMMQPKILLKKDRDREQ
ETWDRERDKDRKLERDREAEPSPSCYPDTPPALKTMIVNRTGEVRPADRC
QMPLAGGALVQGSGQLSAVPSSSVCAALVSSVPTSRDKGSCSGGAGTAGT
SAGAPNALQELQPPRMNRPTPLIVANGIFNANARKLFHKTNTDFTVIGVL
GGQSSGKSTLLNLLAAERSLDYDYYQHLFSPEADECIFATRHKLKPNNGQ
KSILRPRTETLQFFITRERHILLDTPPLMPVGKDSDHQDLYSLGTMAQLL
SVCHILILVIDGLALEQLRLINAALRLRPTLHCKGYVRDHMPQVVFVRAR
AHRIDFEIQQRERLDKKLAYLYGPTGLPIYRGRGDARCLNTFLLPEVSSN
KATAFHSCLGELVRQFRERILGCTRISMCHTSTELSEAIWFEILAESARK
AAPHFEKIYAEIKLRHLDTRCQWRSDNWRTFSSNAESASFLDH
BO17370.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3857-PA | 487 | CG3857-PA | 1..487 | 1..487 | 2541 | 100 | Plus |
