Clone BO17371 Report

Search the DGRC for BO17371

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG11309-RB
Protein status:BO17371.pep: validated full length
Sequenced Size:1078

Clone Sequence Records

BO17371.3prime Sequence

747 bp (726 high quality bases) assembled on 2006-10-13

> BO17371.3prime
ATGGTCTAGAAAGCTTGCAAGCTTGCTCTCCTTCGCCTCCTTGGCCTTCT
GGCGGGATGCAGCCGCTGCCGCCGGTCCGAAGCGCTGGATAAAGTTGTTG
ACCGGTGCAATGATGGCCTCTGGATCGTTCATGTGCACATGGTGCGAGCC
ATTAACCTCCAGGTACTCAAAGTTCGGCTTCTTCAACAGCACATCCAGCA
CCTCGTCGTAGTACTTCTTGTCCTCGAAATACGAGGACTGGGCGGCCTTG
ATGAACAAGTAAGGACATGTAATCCGATTGGCCATTTCCACACACAGCTC
CTGGGACCCGATGGCATAGTTGTAAAACTTGAGACGCCTATCGCGGCAGA
AGAAGTACTTGTCCGGGTACTTCTCCGACTTGCCGATGTTGCGAGCCATT
AAATGCTTGCAGTGCTCCTTGTTCACCGAATGGAAGGTGCCGATATAGAC
CCTCTCAATAAGTTCATCGTAGGTGTAGCTCGGCGGCTCGTTCTTACTCC
GGTTCCTTTCGTCTTCACGCAAGAACTCGTCCAAACGGGTTTCCATGGTC
CTAATAACCGACGGATACGGACGCTGATGAGGTTTCAGGGCATCAATCCC
AATGATCATGTCCACCTTGTCCGGAAAGACCGCGGCGAAAACAAAGCAAA
TAATGGACGACATTGAGTGTCCAACCAGGGACACTTTCTCCCACTTGTAC
TGCTTCATGATCAGGCGGATCACATACAGATTATCCACGGAGTTGTA

BO17371.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PB 1047 CG11309-RB 316..1044 747..19 3645 100 Minus
CG11309-PA 1077 CG11309-RA 346..1074 747..19 3645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RF 2125 CG11309-RF 574..1302 747..19 3645 100 Minus
CG11309-RE 1206 CG11309-RE 350..1078 747..19 3645 100 Minus
CG11309-RD 1536 CG11309-RD 476..1204 747..19 3645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302608..21303336 19..747 3645 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:21:57 has no hits.

BO17371.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:10 Download gff for BO17371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-PA 347..1077 18..746 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:06 Download gff for BO17371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RC 447..1179 13..746 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:42:58 Download gff for BO17371.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RD 477..1209 13..746 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:42:58 Download gff for BO17371.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21302603..21303335 13..746 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:06 Download gff for BO17371.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295703..21296435 13..746 99   Plus

BO17371.5prime Sequence

810 bp (649 high quality bases) assembled on 2006-10-13

> BO17371.5prime
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCTTCGCCGAGATCAGCATTACGGTTCCATGGGG
GCACATATCCGGCAAGTGGTACGGTCCGCAGAACGTCCAACCAATTTTAG
GACTGCACGGGTGGCAGGATAATGCGGGAACCTTTGATCGCCTGATGCCG
CTGCTGTCGCCGGACGTGGCATTCCTCGCGATCGATCTTCCTGGTCACGG
GCTATCGTCCCGACTGCCTGATGGCTGCTACTACAACTCCGTGGATAATC
TGTATGTGATCCGCCTGATCATGAAGCAGTACAAGTGGGAGAAAGTGTCC
CTGGTTGGACACTCAATGTCGTCCATTATTTGCTTTGTTTTCGCCGCGGT
CTTTCCGGACAAGGTGGACATGATCATTGGGATTGATGCCCTGAAACCTC
ATCAGCGTCCGTATCCGTCGGTTATTAGGACCATGGAAACCCGTTTGGAC
GAGTTCTTGCGTGAAGACGAAAGGAACCGGAGTAAGAACGAGCCGCCGAG
CTACACCTACGATGAACTTATTGAGAGGGTCTATATCGGCACCTTCCATT
CGGTGAACAAGGAGCACTGCAAGCATTTAATGGCTCGCAACATCGGCAAG
TCGGAGAAGTACCCGGACAAGTACTTCTTCTGCCGCGATAGGCGTCTCAA
GTTTTACAACTATGCCATCGGGTCCCAGGAGCTGTGTGTGGAAATGCCAA
TCGGATTACA

BO17371.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PB 1047 CG11309-RB 1..780 17..796 3900 100 Plus
CG11309-PA 1077 CG11309-RA 132..810 118..796 3395 100 Plus
CG11309-PA 1077 CG11309-RA 1..102 17..118 510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RF 2125 CG11309-RF 259..1053 17..810 3950 99.9 Plus
CG11309-RE 1206 CG11309-RE 35..829 17..810 3950 99.9 Plus
CG11309-RD 1536 CG11309-RD 161..955 17..810 3950 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302857..21303549 810..119 3415 99.9 Minus
3L 28110227 3L 21303910..21304011 118..17 510 100 Minus
3L 28110227 3L 21305088..21305198 128..238 210 79.3 Plus
Blast to na_te.dros performed on 2015-02-08 12:16:11 has no hits.

BO17371.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:11 Download gff for BO17371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-PB 1..794 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:21 Download gff for BO17371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RC 128..924 14..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:57 Download gff for BO17371.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11309-RD 158..954 14..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:57 Download gff for BO17371.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21302858..21303549 119..809 99 <- Minus
3L 21303910..21304014 14..118 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:21 Download gff for BO17371.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295958..21296649 119..809 99 <- Minus
arm_3L 21297010..21297114 14..118 99   Minus

BO17371.complete Sequence

1078 bp assembled on 2006-10-11

GenBank Submission: FJ634096

> BO17371.complete
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCTTCGCCGAGATCAGCATTACGGTTCCATGGGG
GCACATATCCGGCAAGTGGTACGGTCCGCAGAACGTCCAACCAATTTTAG
GACTGCACGGGTGGCAGGATAATGCGGGAACCTTTGATCGCCTGATGCCG
CTGCTGTCGCCGGACGTGGCATTCCTCGCGATCGATCTTCCTGGTCACGG
GCTATCGTCCCGACTGCCTGATGGCTGCTACTACAACTCCGTGGATAATC
TGTATGTGATCCGCCTGATCATGAAGCAGTACAAGTGGGAGAAAGTGTCC
CTGGTTGGACACTCAATGTCGTCCATTATTTGCTTTGTTTTCGCCGCGGT
CTTTCCGGACAAGGTGGACATGATCATTGGGATTGATGCCCTGAAACCTC
ATCAGCGTCCGTATCCGTCGGTTATTAGGACCATGGAAACCCGTTTGGAC
GAGTTCTTGCGTGAAGACGAAAGGAACCGGAGTAAGAACGAGCCGCCGAG
CTACACCTACGATGAACTTATTGAGAGGGTCTATATCGGCACCTTCCATT
CGGTGAACAAGGAGCACTGCAAGCATTTAATGGCTCGCAACATCGGCAAG
TCGGAGAAGTACCCGGACAAGTACTTCTTCTGCCGCGATAGGCGTCTCAA
GTTTTACAACTATGCCATCGGGTCCCAGGAGCTGTGTGTGGAAATGGCCA
ATCGGATTACATGTCCTTACTTGTTCATCAAGGCCGCCCAGTCCTCGTAT
TTCGAGGACAAGAAGTACTACGACGAGGTGCTGGATGTGCTGTTGAAGAA
GCCGAACTTTGAGTACCTGGAGGTTAATGGCTCGCACCATGTGCACATGA
ACGATCCAGAGGCCATCATTGCACCGGTCAACAACTTTATCCAGCGCTTC
GGACCGGCGGCAGCGGCTGCATCCCGCCAGAAGGCCAAGGAGGCGAAGGA
GAGCAAGCTTGCAAGCTTTCTAGACCAT

BO17371.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RF 1047 CG11309-PF 1..1044 17..1060 5220 100 Plus
CG11309-RE 1047 CG11309-PE 1..1044 17..1060 5220 100 Plus
CG11309-RD 1047 CG11309-PD 1..1044 17..1060 5220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RF 2125 CG11309-RF 259..1302 17..1060 5220 100 Plus
CG11309-RE 1206 CG11309-RE 35..1078 17..1060 5220 100 Plus
CG11309-RD 1536 CG11309-RD 161..1204 17..1060 5220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302608..21303549 1060..119 4710 100 Minus
3L 28110227 3L 21303910..21304011 118..17 510 100 Minus
3L 28110227 3L 21305088..21305198 128..238 210 79.3 Plus
Blast to na_te.dros performed on 2014-11-27 06:56:00 has no hits.

BO17371.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:23 Download gff for BO17371.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 1..1047 17..1061 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:32 Download gff for BO17371.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 251..1302 14..1066 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:23 Download gff for BO17371.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RC 131..1174 17..1062 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:23 Download gff for BO17371.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 251..1302 14..1066 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:24 Download gff for BO17371.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RD 161..1204 17..1062 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:24 Download gff for BO17371.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21302606..21303549 119..1062 99 <- Minus
3L 21303910..21304011 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:23 Download gff for BO17371.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295706..21296649 119..1062 99 <- Minus
arm_3L 21297010..21297111 17..118 100   Minus

BO17371.pep Sequence

Translation from 16 to 1078

> BO17371.pep
MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPFAEISITVPWGHISGK
WYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAIDLPGHGLSSRL
PDGCYYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICFVFAAVFPDKV
DMIIGIDALKPHQRPYPSVIRTMETRLDEFLREDERNRSKNEPPSYTYDE
LIERVYIGTFHSVNKEHCKHLMARNIGKSEKYPDKYFFCRDRRLKFYNYA
IGSQELCVEMANRITCPYLFIKAAQSSYFEDKKYYDEVLDVLLKKPNFEY
LEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKAKEAKESKLAS
FLDH

BO17371.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PF 348 CG11309-PF 1..348 1..348 1864 100 Plus
CG11309-PE 348 CG11309-PE 1..348 1..348 1864 100 Plus
CG11309-PD 348 CG11309-PD 1..348 1..348 1864 100 Plus
CG11309-PC 348 CG11309-PC 1..348 1..348 1864 100 Plus
CG11309-PB 348 CG11309-PB 1..348 1..348 1864 100 Plus