Clone Sequence Records
BO17371.3prime Sequence
747 bp (726 high quality bases) assembled on 2006-10-13
> BO17371.3prime
ATGGTCTAGAAAGCTTGCAAGCTTGCTCTCCTTCGCCTCCTTGGCCTTCT
GGCGGGATGCAGCCGCTGCCGCCGGTCCGAAGCGCTGGATAAAGTTGTTG
ACCGGTGCAATGATGGCCTCTGGATCGTTCATGTGCACATGGTGCGAGCC
ATTAACCTCCAGGTACTCAAAGTTCGGCTTCTTCAACAGCACATCCAGCA
CCTCGTCGTAGTACTTCTTGTCCTCGAAATACGAGGACTGGGCGGCCTTG
ATGAACAAGTAAGGACATGTAATCCGATTGGCCATTTCCACACACAGCTC
CTGGGACCCGATGGCATAGTTGTAAAACTTGAGACGCCTATCGCGGCAGA
AGAAGTACTTGTCCGGGTACTTCTCCGACTTGCCGATGTTGCGAGCCATT
AAATGCTTGCAGTGCTCCTTGTTCACCGAATGGAAGGTGCCGATATAGAC
CCTCTCAATAAGTTCATCGTAGGTGTAGCTCGGCGGCTCGTTCTTACTCC
GGTTCCTTTCGTCTTCACGCAAGAACTCGTCCAAACGGGTTTCCATGGTC
CTAATAACCGACGGATACGGACGCTGATGAGGTTTCAGGGCATCAATCCC
AATGATCATGTCCACCTTGTCCGGAAAGACCGCGGCGAAAACAAAGCAAA
TAATGGACGACATTGAGTGTCCAACCAGGGACACTTTCTCCCACTTGTAC
TGCTTCATGATCAGGCGGATCACATACAGATTATCCACGGAGTTGTA
BO17371.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-PB | 1047 | CG11309-RB | 316..1044 | 747..19 | 3645 | 100 | Minus |
CG11309-PA | 1077 | CG11309-RA | 346..1074 | 747..19 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RF | 2125 | CG11309-RF | 574..1302 | 747..19 | 3645 | 100 | Minus |
CG11309-RE | 1206 | CG11309-RE | 350..1078 | 747..19 | 3645 | 100 | Minus |
CG11309-RD | 1536 | CG11309-RD | 476..1204 | 747..19 | 3645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21302608..21303336 | 19..747 | 3645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:21:57 has no hits.
BO17371.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:10 Download gff for
BO17371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-PA | 347..1077 | 18..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:06 Download gff for
BO17371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RC | 447..1179 | 13..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:42:58 Download gff for
BO17371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RD | 477..1209 | 13..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:42:58 Download gff for
BO17371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21302603..21303335 | 13..746 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:06 Download gff for
BO17371.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21295703..21296435 | 13..746 | 99 | | Plus |
BO17371.5prime Sequence
810 bp (649 high quality bases) assembled on 2006-10-13
> BO17371.5prime
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCTTCGCCGAGATCAGCATTACGGTTCCATGGGG
GCACATATCCGGCAAGTGGTACGGTCCGCAGAACGTCCAACCAATTTTAG
GACTGCACGGGTGGCAGGATAATGCGGGAACCTTTGATCGCCTGATGCCG
CTGCTGTCGCCGGACGTGGCATTCCTCGCGATCGATCTTCCTGGTCACGG
GCTATCGTCCCGACTGCCTGATGGCTGCTACTACAACTCCGTGGATAATC
TGTATGTGATCCGCCTGATCATGAAGCAGTACAAGTGGGAGAAAGTGTCC
CTGGTTGGACACTCAATGTCGTCCATTATTTGCTTTGTTTTCGCCGCGGT
CTTTCCGGACAAGGTGGACATGATCATTGGGATTGATGCCCTGAAACCTC
ATCAGCGTCCGTATCCGTCGGTTATTAGGACCATGGAAACCCGTTTGGAC
GAGTTCTTGCGTGAAGACGAAAGGAACCGGAGTAAGAACGAGCCGCCGAG
CTACACCTACGATGAACTTATTGAGAGGGTCTATATCGGCACCTTCCATT
CGGTGAACAAGGAGCACTGCAAGCATTTAATGGCTCGCAACATCGGCAAG
TCGGAGAAGTACCCGGACAAGTACTTCTTCTGCCGCGATAGGCGTCTCAA
GTTTTACAACTATGCCATCGGGTCCCAGGAGCTGTGTGTGGAAATGCCAA
TCGGATTACA
BO17371.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-PB | 1047 | CG11309-RB | 1..780 | 17..796 | 3900 | 100 | Plus |
CG11309-PA | 1077 | CG11309-RA | 132..810 | 118..796 | 3395 | 100 | Plus |
CG11309-PA | 1077 | CG11309-RA | 1..102 | 17..118 | 510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RF | 2125 | CG11309-RF | 259..1053 | 17..810 | 3950 | 99.9 | Plus |
CG11309-RE | 1206 | CG11309-RE | 35..829 | 17..810 | 3950 | 99.9 | Plus |
CG11309-RD | 1536 | CG11309-RD | 161..955 | 17..810 | 3950 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21302857..21303549 | 810..119 | 3415 | 99.9 | Minus |
3L | 28110227 | 3L | 21303910..21304011 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 21305088..21305198 | 128..238 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:16:11 has no hits.
BO17371.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:11 Download gff for
BO17371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-PB | 1..794 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:21 Download gff for
BO17371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RC | 128..924 | 14..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:57 Download gff for
BO17371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RD | 158..954 | 14..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:57 Download gff for
BO17371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21302858..21303549 | 119..809 | 99 | <- | Minus |
3L | 21303910..21304014 | 14..118 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:21 Download gff for
BO17371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21295958..21296649 | 119..809 | 99 | <- | Minus |
arm_3L | 21297010..21297114 | 14..118 | 99 | | Minus |
BO17371.complete Sequence
1078 bp assembled on 2006-10-11
GenBank Submission: FJ634096
> BO17371.complete
GAAGTTATCAGTCGACATGGACACGGACGACAACTCAAGTGGCACTATTA
CCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGACTTAACTGGC
GAAGCCCCAACCAGACCCTTCGCCGAGATCAGCATTACGGTTCCATGGGG
GCACATATCCGGCAAGTGGTACGGTCCGCAGAACGTCCAACCAATTTTAG
GACTGCACGGGTGGCAGGATAATGCGGGAACCTTTGATCGCCTGATGCCG
CTGCTGTCGCCGGACGTGGCATTCCTCGCGATCGATCTTCCTGGTCACGG
GCTATCGTCCCGACTGCCTGATGGCTGCTACTACAACTCCGTGGATAATC
TGTATGTGATCCGCCTGATCATGAAGCAGTACAAGTGGGAGAAAGTGTCC
CTGGTTGGACACTCAATGTCGTCCATTATTTGCTTTGTTTTCGCCGCGGT
CTTTCCGGACAAGGTGGACATGATCATTGGGATTGATGCCCTGAAACCTC
ATCAGCGTCCGTATCCGTCGGTTATTAGGACCATGGAAACCCGTTTGGAC
GAGTTCTTGCGTGAAGACGAAAGGAACCGGAGTAAGAACGAGCCGCCGAG
CTACACCTACGATGAACTTATTGAGAGGGTCTATATCGGCACCTTCCATT
CGGTGAACAAGGAGCACTGCAAGCATTTAATGGCTCGCAACATCGGCAAG
TCGGAGAAGTACCCGGACAAGTACTTCTTCTGCCGCGATAGGCGTCTCAA
GTTTTACAACTATGCCATCGGGTCCCAGGAGCTGTGTGTGGAAATGGCCA
ATCGGATTACATGTCCTTACTTGTTCATCAAGGCCGCCCAGTCCTCGTAT
TTCGAGGACAAGAAGTACTACGACGAGGTGCTGGATGTGCTGTTGAAGAA
GCCGAACTTTGAGTACCTGGAGGTTAATGGCTCGCACCATGTGCACATGA
ACGATCCAGAGGCCATCATTGCACCGGTCAACAACTTTATCCAGCGCTTC
GGACCGGCGGCAGCGGCTGCATCCCGCCAGAAGGCCAAGGAGGCGAAGGA
GAGCAAGCTTGCAAGCTTTCTAGACCAT
BO17371.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RF | 1047 | CG11309-PF | 1..1044 | 17..1060 | 5220 | 100 | Plus |
CG11309-RE | 1047 | CG11309-PE | 1..1044 | 17..1060 | 5220 | 100 | Plus |
CG11309-RD | 1047 | CG11309-PD | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-RF | 2125 | CG11309-RF | 259..1302 | 17..1060 | 5220 | 100 | Plus |
CG11309-RE | 1206 | CG11309-RE | 35..1078 | 17..1060 | 5220 | 100 | Plus |
CG11309-RD | 1536 | CG11309-RD | 161..1204 | 17..1060 | 5220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21302608..21303549 | 1060..119 | 4710 | 100 | Minus |
3L | 28110227 | 3L | 21303910..21304011 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 21305088..21305198 | 128..238 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:56:00 has no hits.
BO17371.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:23 Download gff for
BO17371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RB | 1..1047 | 17..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:32 Download gff for
BO17371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RB | 251..1302 | 14..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:23 Download gff for
BO17371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RC | 131..1174 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:23 Download gff for
BO17371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RB | 251..1302 | 14..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:24 Download gff for
BO17371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11309-RD | 161..1204 | 17..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:24 Download gff for
BO17371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21302606..21303549 | 119..1062 | 99 | <- | Minus |
3L | 21303910..21304011 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:23 Download gff for
BO17371.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21295706..21296649 | 119..1062 | 99 | <- | Minus |
arm_3L | 21297010..21297111 | 17..118 | 100 | | Minus |
BO17371.pep Sequence
Translation from 16 to 1078
> BO17371.pep
MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPFAEISITVPWGHISGK
WYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAIDLPGHGLSSRL
PDGCYYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICFVFAAVFPDKV
DMIIGIDALKPHQRPYPSVIRTMETRLDEFLREDERNRSKNEPPSYTYDE
LIERVYIGTFHSVNKEHCKHLMARNIGKSEKYPDKYFFCRDRRLKFYNYA
IGSQELCVEMANRITCPYLFIKAAQSSYFEDKKYYDEVLDVLLKKPNFEY
LEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKAKEAKESKLAS
FLDH
BO17371.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11309-PF | 348 | CG11309-PF | 1..348 | 1..348 | 1864 | 100 | Plus |
CG11309-PE | 348 | CG11309-PE | 1..348 | 1..348 | 1864 | 100 | Plus |
CG11309-PD | 348 | CG11309-PD | 1..348 | 1..348 | 1864 | 100 | Plus |
CG11309-PC | 348 | CG11309-PC | 1..348 | 1..348 | 1864 | 100 | Plus |
CG11309-PB | 348 | CG11309-PB | 1..348 | 1..348 | 1864 | 100 | Plus |