Clone BO17372 Report

Search the DGRC for BO17372

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG10222-RA
Protein status:BO17372.pep: validated full length
Sequenced Size:955

Clone Sequence Records

BO17372.3prime Sequence

807 bp (725 high quality bases) assembled on 2006-10-13

> BO17372.3prime
ATGGTCTAGAAAGCTTGCTTCCATATAGGGTTGGACATCATGCTCCATGC
GAGCGGCCTCAGTTTCTGCACCCACGGCGCAGGCTAGTAGTGAGTTGACC
GTCTGCTCCTCACCTGCCTTGTAGACGTATCCATTAGCCTTGTCGATGTG
ATTGCGCAAGCGGAGCATGCTGTCCGTGCTGAAGACGTCCAGCAGTTGGA
ACGAAACGAGAGCGTAGTCCTCCACCATGGAGCAGATGGCTGCATTCAGT
TTTCGATACTTGCGCATGGCGGGATCATCGTCCAGTTTGTCCAGCAGATA
CTTGAGGTCCAGGACGTCCGTATAATAGTCCACGTTAAAGTGTAACTTGG
TCTCGTGCTTCTTTAGCAGATCGGCCTTGGAAAGCACATTAACGTGGGGT
AGACTCATCCGCAACATGGTGTTCAATGCCATCAGCAAAGTGGCAATGAA
TTTGGCAGGCTCCGAGCAGTAATGGGAATCTATAAGGTTAACGGTGACCA
GGCTATATCTTTCACGCTCCAAACGCTCGAAAATCCGGGCCATAGCGTTG
TGATGGGTATATAGCTCAACTTGGCCGGGACAGTCGAACAGGAAGTAGTT
GTAAGTGGCGCTTAGTTTGCGCAGTGCCGGCAACAGCCAATCCTCCAAAT
GGTCGGCCAGATACTCAGCGCAGTGCATTAGAGCTCCGTTTGGTCCCAGC
TTCAGGTGCTCCATGCAATCCTCCACAGTGATTAGCTCCATCACACTTAG
CACCGGTTCGTAGGACATGTTTTCGTTGGCTGGATCCAGATTCACAACGC
CCCACTG

BO17372.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-PA 924 CG10222-RA 138..921 802..19 3920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-RB 1332 CG10222-RB 139..922 802..19 3920 100 Minus
CG10222-RA 1074 CG10222-RA 139..922 802..19 3920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13411532..13412315 19..802 3920 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:23:59 has no hits.

BO17372.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:12 Download gff for BO17372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10222-PA 133..924 15..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:27 Download gff for BO17372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 134..925 15..807 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:20 Download gff for BO17372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 134..925 15..807 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:20 Download gff for BO17372.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13411528..13412320 15..807 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:27 Download gff for BO17372.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13404628..13405420 15..807 99   Plus

BO17372.5prime Sequence

843 bp (700 high quality bases) assembled on 2006-10-13

> BO17372.5prime
GAAGTTATCAGTCGACATGATGCAAAGATTTCCGACGCAGGCGACCGTGG
AGAATCCACGTTATGGACAGCTAATCATAGGACCTCCTGGTTCTGGGAAA
ACCACCTATTGCGGTGAGGCCCTTAAGTTCTATCGCGAACTGGGCCGTCA
GGTGGGCGTTGTGAATCTGGATCCAGCCAACGAAAACATGTCCTACGAAC
CGGTGCTAAGTGTGATGGAGCTAATCACTGTGGAGGATTGCATGGAGCAC
CTGAAGCTGGGACCAAACGGAGCTCTAATGCACTGCGCTGAGTATCTGGC
CGACCATTTGGAGGATTGGCTGTTGCCGGCACTGCGCAAACTAAGCGCCA
CTTACAACTACTTCCTGTTCGACTGTCCCGGCCAAGTTGAGCTATATACC
CATCACAACGCTATGGCCCGGATTTTCGAGCGTTTGGAGCGTGAAAGATA
TAGCCTGGTCACCGTTAACCTTATAGATTCCCATTACTGCTCGGAGCCTG
CCAAATTCATTGCCACTTTGCTGATGGCATTGAACACCATGTTGCGGATG
AGTCTACCCCACGTTAATGTGCTTTCCAAGGCCGATCTGCTAAAGAAGCA
CGAGACCAAGTTACACTTTAACGTGGACTATTATACGGACGTCCTGGACC
TCAAGTATCTGCTGGACAAACTGGACGATGATCCCGCCATGCGCAAGTAT
CGAAAACTGAATGCAGCCATCTGCTCCATGGTGGAGGACTACGCTCTCGT
TTCGTTCCAACTGCTGGACGTCTTCAGCACGGACAGCATGCTCCGCTTGC
GCAATCACATCGACAAAGCTAATGGATACGTCTACAAGGCAGG

BO17372.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-PA 924 CG10222-RA 1..827 17..843 4110 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-RB 1332 CG10222-RB 2..828 17..843 4120 99.9 Plus
CG10222-RA 1074 CG10222-RA 2..828 17..843 4120 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13411626..13412452 843..17 4120 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 17:55:08 has no hits.

BO17372.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:12 Download gff for BO17372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10222-PA 1..827 17..843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:59 Download gff for BO17372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 2..828 17..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:02 Download gff for BO17372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 2..828 17..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:02 Download gff for BO17372.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13411626..13412457 9..843 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:59 Download gff for BO17372.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13404726..13405557 9..843 99   Minus

BO17372.complete Sequence

955 bp assembled on 2006-10-11

GenBank Submission: FJ634097

> BO17372.complete
GAAGTTATCAGTCGACATGATGCAAAGATTTCCGACGCAGGCGACCGTGG
AGAATCCACGTTATGGACAGCTAATCATAGGACCTCCTGGTTCTGGGAAA
ACCACCTATTGCGGTGAGGCCCTTAAGTTCTATCGCGAACTGGGCCGTCA
GGTGGGCGTTGTGAATCTGGATCCAGCCAACGAAAACATGTCCTACGAAC
CGGTGCTAAGTGTGATGGAGCTAATCACTGTGGAGGATTGCATGGAGCAC
CTGAAGCTGGGACCAAACGGAGCTCTAATGCACTGCGCTGAGTATCTGGC
CGACCATTTGGAGGATTGGCTGTTGCCGGCACTGCGCAAACTAAGCGCCA
CTTACAACTACTTCCTGTTCGACTGTCCCGGCCAAGTTGAGCTATATACC
CATCACAACGCTATGGCCCGGATTTTCGAGCGTTTGGAGCGTGAAAGATA
TAGCCTGGTCACCGTTAACCTTATAGATTCCCATTACTGCTCGGAGCCTG
CCAAATTCATTGCCACTTTGCTGATGGCATTGAACACCATGTTGCGGATG
AGTCTACCCCACGTTAATGTGCTTTCCAAGGCCGATCTGCTAAAGAAGCA
CGAGACCAAGTTACACTTTAACGTGGACTATTATACGGACGTCCTGGACC
TCAAGTATCTGCTGGACAAACTGGACGATGATCCCGCCATGCGCAAGTAT
CGAAAACTGAATGCAGCCATCTGCTCCATGGTGGAGGACTACGCTCTCGT
TTCGTTCCAACTGCTGGACGTCTTCAGCACGGACAGCATGCTCCGCTTGC
GCAATCACATCGACAAGGCTAATGGATACGTCTACAAGGCAGGTGAGGAG
CAGACGGTCAACTCACTACTAGCCTGCGCCGTGGGTGCAGAAACTGAGGC
CGCTCGCATGGAGCATGATGTCCAACCCTATATGGAAGCAAGCTTTCTAG
ACCAT

BO17372.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-RB 924 CG10222-PB 1..921 17..937 4605 100 Plus
CG10222-RA 924 CG10222-PA 1..921 17..937 4605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-RB 1332 CG10222-RB 2..922 17..937 4605 100 Plus
CG10222-RA 1074 CG10222-RA 2..922 17..937 4605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13411532..13412452 937..17 4605 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:16:03 has no hits.

BO17372.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:04 Download gff for BO17372.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..924 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:03 Download gff for BO17372.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 2..925 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:19 Download gff for BO17372.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 2..922 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:04 Download gff for BO17372.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 2..925 17..941 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:13 Download gff for BO17372.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 2..922 17..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:13 Download gff for BO17372.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13411530..13412452 17..939 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:19 Download gff for BO17372.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13404630..13405552 17..939 99   Minus

BO17372.pep Sequence

Translation from 16 to 955

> BO17372.pep
MMQRFPTQATVENPRYGQLIIGPPGSGKTTYCGEALKFYRELGRQVGVVN
LDPANENMSYEPVLSVMELITVEDCMEHLKLGPNGALMHCAEYLADHLED
WLLPALRKLSATYNYFLFDCPGQVELYTHHNAMARIFERLERERYSLVTV
NLIDSHYCSEPAKFIATLLMALNTMLRMSLPHVNVLSKADLLKKHETKLH
FNVDYYTDVLDLKYLLDKLDDDPAMRKYRKLNAAICSMVEDYALVSFQLL
DVFSTDSMLRLRNHIDKANGYVYKAGEEQTVNSLLACAVGAETEAARMEH
DVQPYMEASFLDH

BO17372.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-PB 307 CG10222-PB 1..307 1..307 1610 100 Plus
CG10222-PA 307 CG10222-PA 1..307 1..307 1610 100 Plus
CG2656-PA 283 CG2656-PA 2..270 15..282 399 36.7 Plus
CG3704-PA 382 CG3704-PA 27..209 19..208 173 25.3 Plus