Clone Sequence Records
BO17372.3prime Sequence
807 bp (725 high quality bases) assembled on 2006-10-13
> BO17372.3prime
ATGGTCTAGAAAGCTTGCTTCCATATAGGGTTGGACATCATGCTCCATGC
GAGCGGCCTCAGTTTCTGCACCCACGGCGCAGGCTAGTAGTGAGTTGACC
GTCTGCTCCTCACCTGCCTTGTAGACGTATCCATTAGCCTTGTCGATGTG
ATTGCGCAAGCGGAGCATGCTGTCCGTGCTGAAGACGTCCAGCAGTTGGA
ACGAAACGAGAGCGTAGTCCTCCACCATGGAGCAGATGGCTGCATTCAGT
TTTCGATACTTGCGCATGGCGGGATCATCGTCCAGTTTGTCCAGCAGATA
CTTGAGGTCCAGGACGTCCGTATAATAGTCCACGTTAAAGTGTAACTTGG
TCTCGTGCTTCTTTAGCAGATCGGCCTTGGAAAGCACATTAACGTGGGGT
AGACTCATCCGCAACATGGTGTTCAATGCCATCAGCAAAGTGGCAATGAA
TTTGGCAGGCTCCGAGCAGTAATGGGAATCTATAAGGTTAACGGTGACCA
GGCTATATCTTTCACGCTCCAAACGCTCGAAAATCCGGGCCATAGCGTTG
TGATGGGTATATAGCTCAACTTGGCCGGGACAGTCGAACAGGAAGTAGTT
GTAAGTGGCGCTTAGTTTGCGCAGTGCCGGCAACAGCCAATCCTCCAAAT
GGTCGGCCAGATACTCAGCGCAGTGCATTAGAGCTCCGTTTGGTCCCAGC
TTCAGGTGCTCCATGCAATCCTCCACAGTGATTAGCTCCATCACACTTAG
CACCGGTTCGTAGGACATGTTTTCGTTGGCTGGATCCAGATTCACAACGC
CCCACTG
BO17372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-PA | 924 | CG10222-RA | 138..921 | 802..19 | 3920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-RB | 1332 | CG10222-RB | 139..922 | 802..19 | 3920 | 100 | Minus |
CG10222-RA | 1074 | CG10222-RA | 139..922 | 802..19 | 3920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13411532..13412315 | 19..802 | 3920 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:23:59 has no hits.
BO17372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:12 Download gff for
BO17372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-PA | 133..924 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:27 Download gff for
BO17372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 134..925 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:20 Download gff for
BO17372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 134..925 | 15..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:20 Download gff for
BO17372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13411528..13412320 | 15..807 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:27 Download gff for
BO17372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13404628..13405420 | 15..807 | 99 | | Plus |
BO17372.5prime Sequence
843 bp (700 high quality bases) assembled on 2006-10-13
> BO17372.5prime
GAAGTTATCAGTCGACATGATGCAAAGATTTCCGACGCAGGCGACCGTGG
AGAATCCACGTTATGGACAGCTAATCATAGGACCTCCTGGTTCTGGGAAA
ACCACCTATTGCGGTGAGGCCCTTAAGTTCTATCGCGAACTGGGCCGTCA
GGTGGGCGTTGTGAATCTGGATCCAGCCAACGAAAACATGTCCTACGAAC
CGGTGCTAAGTGTGATGGAGCTAATCACTGTGGAGGATTGCATGGAGCAC
CTGAAGCTGGGACCAAACGGAGCTCTAATGCACTGCGCTGAGTATCTGGC
CGACCATTTGGAGGATTGGCTGTTGCCGGCACTGCGCAAACTAAGCGCCA
CTTACAACTACTTCCTGTTCGACTGTCCCGGCCAAGTTGAGCTATATACC
CATCACAACGCTATGGCCCGGATTTTCGAGCGTTTGGAGCGTGAAAGATA
TAGCCTGGTCACCGTTAACCTTATAGATTCCCATTACTGCTCGGAGCCTG
CCAAATTCATTGCCACTTTGCTGATGGCATTGAACACCATGTTGCGGATG
AGTCTACCCCACGTTAATGTGCTTTCCAAGGCCGATCTGCTAAAGAAGCA
CGAGACCAAGTTACACTTTAACGTGGACTATTATACGGACGTCCTGGACC
TCAAGTATCTGCTGGACAAACTGGACGATGATCCCGCCATGCGCAAGTAT
CGAAAACTGAATGCAGCCATCTGCTCCATGGTGGAGGACTACGCTCTCGT
TTCGTTCCAACTGCTGGACGTCTTCAGCACGGACAGCATGCTCCGCTTGC
GCAATCACATCGACAAAGCTAATGGATACGTCTACAAGGCAGG
BO17372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-PA | 924 | CG10222-RA | 1..827 | 17..843 | 4110 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-RB | 1332 | CG10222-RB | 2..828 | 17..843 | 4120 | 99.9 | Plus |
CG10222-RA | 1074 | CG10222-RA | 2..828 | 17..843 | 4120 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13411626..13412452 | 843..17 | 4120 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:55:08 has no hits.
BO17372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:12 Download gff for
BO17372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-PA | 1..827 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:59 Download gff for
BO17372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 2..828 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:02 Download gff for
BO17372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 2..828 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:02 Download gff for
BO17372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13411626..13412457 | 9..843 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:59 Download gff for
BO17372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13404726..13405557 | 9..843 | 99 | | Minus |
BO17372.complete Sequence
955 bp assembled on 2006-10-11
GenBank Submission: FJ634097
> BO17372.complete
GAAGTTATCAGTCGACATGATGCAAAGATTTCCGACGCAGGCGACCGTGG
AGAATCCACGTTATGGACAGCTAATCATAGGACCTCCTGGTTCTGGGAAA
ACCACCTATTGCGGTGAGGCCCTTAAGTTCTATCGCGAACTGGGCCGTCA
GGTGGGCGTTGTGAATCTGGATCCAGCCAACGAAAACATGTCCTACGAAC
CGGTGCTAAGTGTGATGGAGCTAATCACTGTGGAGGATTGCATGGAGCAC
CTGAAGCTGGGACCAAACGGAGCTCTAATGCACTGCGCTGAGTATCTGGC
CGACCATTTGGAGGATTGGCTGTTGCCGGCACTGCGCAAACTAAGCGCCA
CTTACAACTACTTCCTGTTCGACTGTCCCGGCCAAGTTGAGCTATATACC
CATCACAACGCTATGGCCCGGATTTTCGAGCGTTTGGAGCGTGAAAGATA
TAGCCTGGTCACCGTTAACCTTATAGATTCCCATTACTGCTCGGAGCCTG
CCAAATTCATTGCCACTTTGCTGATGGCATTGAACACCATGTTGCGGATG
AGTCTACCCCACGTTAATGTGCTTTCCAAGGCCGATCTGCTAAAGAAGCA
CGAGACCAAGTTACACTTTAACGTGGACTATTATACGGACGTCCTGGACC
TCAAGTATCTGCTGGACAAACTGGACGATGATCCCGCCATGCGCAAGTAT
CGAAAACTGAATGCAGCCATCTGCTCCATGGTGGAGGACTACGCTCTCGT
TTCGTTCCAACTGCTGGACGTCTTCAGCACGGACAGCATGCTCCGCTTGC
GCAATCACATCGACAAGGCTAATGGATACGTCTACAAGGCAGGTGAGGAG
CAGACGGTCAACTCACTACTAGCCTGCGCCGTGGGTGCAGAAACTGAGGC
CGCTCGCATGGAGCATGATGTCCAACCCTATATGGAAGCAAGCTTTCTAG
ACCAT
BO17372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-RB | 924 | CG10222-PB | 1..921 | 17..937 | 4605 | 100 | Plus |
CG10222-RA | 924 | CG10222-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-RB | 1332 | CG10222-RB | 2..922 | 17..937 | 4605 | 100 | Plus |
CG10222-RA | 1074 | CG10222-RA | 2..922 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13411532..13412452 | 937..17 | 4605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:16:03 has no hits.
BO17372.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:04 Download gff for
BO17372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 1..924 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:03 Download gff for
BO17372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 2..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:19 Download gff for
BO17372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 2..922 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:04 Download gff for
BO17372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 2..925 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:13 Download gff for
BO17372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10222-RA | 2..922 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:13 Download gff for
BO17372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13411530..13412452 | 17..939 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:19 Download gff for
BO17372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13404630..13405552 | 17..939 | 99 | | Minus |
BO17372.pep Sequence
Translation from 16 to 955
> BO17372.pep
MMQRFPTQATVENPRYGQLIIGPPGSGKTTYCGEALKFYRELGRQVGVVN
LDPANENMSYEPVLSVMELITVEDCMEHLKLGPNGALMHCAEYLADHLED
WLLPALRKLSATYNYFLFDCPGQVELYTHHNAMARIFERLERERYSLVTV
NLIDSHYCSEPAKFIATLLMALNTMLRMSLPHVNVLSKADLLKKHETKLH
FNVDYYTDVLDLKYLLDKLDDDPAMRKYRKLNAAICSMVEDYALVSFQLL
DVFSTDSMLRLRNHIDKANGYVYKAGEEQTVNSLLACAVGAETEAARMEH
DVQPYMEASFLDH
BO17372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10222-PB | 307 | CG10222-PB | 1..307 | 1..307 | 1610 | 100 | Plus |
CG10222-PA | 307 | CG10222-PA | 1..307 | 1..307 | 1610 | 100 | Plus |
CG2656-PA | 283 | CG2656-PA | 2..270 | 15..282 | 399 | 36.7 | Plus |
CG3704-PA | 382 | CG3704-PA | 27..209 | 19..208 | 173 | 25.3 | Plus |