Clone Sequence Records
BO17373.3prime Sequence
781 bp (710 high quality bases) assembled on 2006-10-13
> BO17373.3prime
ATGGTCTAGAAAGCTTGCCATGGCTGATGAGATCTGCTGCCCCTGTTGAT
AGAGTTGATCTTGCTGCTGCGGCTGTTGCTGCTGCTGCTGTTGTTGCTGC
TGCGGTTGGTACTGCTGCTGCTGCTGCTGCGGCTGTTGGTACTGCGGCTG
TTGCTGCTGCCCCATCTGCTGCTGCGGCGCCAGTTGCAATGGCGGCGGTG
TGTTGCCAATTGCTGCCGCAGCTGCTCGGGCATTTTGCTGCGTTGTGGCC
TCGTTGGTCTTCAGGAAATATGTTATTAAATCGATGGGCAGCGGGAACAC
AATCGTCGAGTTCTTCTCCGCAGATATGGTGTTGAGTGTCTGAAGGTAGC
GCAGTTGGAGGGCAGCCGGCGAATCGCCAATCACCTCGGACGCCTCGCGA
AGAGCCCTCGACGCCTTCTGTTCTCCTTCGGCGGCGATGACTTTGGCGCG
GGCTTCCCGGGCGGCTTCTGCCTCCGCGGCCATGGCACGTTGCAGTTGCA
CCGGCAGACGCACGTCCTTGATTTCCACACGTTCAACTTTGATGCCCCAG
GCATCGGTGGCTTCGTCGAGTTGAACCTGCATTGTGCCGGAAATCGTCAT
ACGCTCGCTGAGTATCTCATGCAAATGCCGAGTTCCCATTGTGTTTCGTA
GAGTAGTCTGTGCCAGTAGCCTGGTCGAATGGTGAGCATTCTCCACGTTC
GCGATAGAGACGGTCGCATTTGATACCCGATAGTAAACCACTGCATCAAC
CGAAACCGTAACGCTATCCTTTGTGAAAACC
BO17373.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32245-PB | 1518 | CG32245-RB | 758..1515 | 776..19 | 3765 | 99.8 | Minus |
CG32245-PC | 1197 | CG32245-RC | 437..1194 | 776..19 | 3765 | 99.8 | Minus |
CG32245-PA | 1194 | CG32245-RA | 434..1191 | 776..19 | 3765 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-RG | 3802 | CG42540-RG | 1097..1859 | 781..19 | 3785 | 99.7 | Minus |
CG42540-RJ | 4175 | CG42540-RJ | 1470..2232 | 781..19 | 3785 | 99.7 | Minus |
CG42540-RI | 3899 | CG42540-RI | 1194..1956 | 781..19 | 3785 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4590026..4590352 | 345..19 | 1635 | 100 | Minus |
3L | 28110227 | 3L | 4586579..4586785 | 781..575 | 1005 | 99 | Minus |
3L | 28110227 | 3L | 4589787..4589967 | 520..340 | 905 | 100 | Minus |
3L | 28110227 | 3L | 4588066..4588124 | 579..521 | 295 | 100 | Minus |
X | 23542271 | X | 19186315..19186413 | 483..385 | 210 | 80.8 | Minus |
Blast to na_te.dros performed 2015-02-10 21:49:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 1502..1565 | 271..334 | 121 | 69.2 | Plus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 514..661 | 392..544 | 114 | 54.9 | Plus |
BO17373.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:13 Download gff for
BO17373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-PA | 429..1194 | 15..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:16 Download gff for
BO17373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RI | 1194..1959 | 15..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:46 Download gff for
BO17373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RI | 1194..1959 | 15..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:46 Download gff for
BO17373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4586579..4586783 | 577..781 | 99 | -> | Minus |
3L | 4588069..4588124 | 521..576 | 100 | -> | Minus |
3L | 4589787..4589967 | 340..520 | 100 | -> | Minus |
3L | 4590032..4590355 | 15..339 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:16 Download gff for
BO17373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4586579..4586783 | 577..781 | 99 | -> | Minus |
arm_3L | 4588069..4588124 | 521..576 | 100 | -> | Minus |
arm_3L | 4589787..4589967 | 340..520 | 100 | -> | Minus |
arm_3L | 4590032..4590355 | 15..339 | 99 | | Minus |
BO17373.5prime Sequence
754 bp (674 high quality bases) assembled on 2006-10-13
> BO17373.5prime
GAAGTTATCAGTCGACATGGTCGAGGAGTTCCTGGAGAAGTTGCCAGAAA
TCGACACACGCTACGAGGATATTGTGCCCATGGAACAAGTGAGCTCGATG
GTCTCCAATGGCGGTGGCAGCGTGGCCATGCAGCGCGATGATGAGTACAG
GAATCGGATCATGAAAATACGTAGACTTGCGGACGAGGAAATCAGCGATA
AGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTTGTG
ATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCAGGA
GTACGAGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCGGTG
CCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTATGCC
CGTGTGGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGTTCT
CACAAAGGATAGCGTTACGGTTTCGGTGGATGCAGTGGTTTACTATCGGG
TATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCATTCG
ACCAGGCTACTGGCACAGACTACTCTACGAAACACAATGGGAACTCGGCA
TTTGCATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGCAGG
TTCAACTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGTGTG
GAAATCAAGGACGTGCGTCTGCCGGTGCAACTGCAACGTGCCATGGCCGC
GGAG
BO17373.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32245-PA | 1194 | CG32245-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
CG32245-PB | 1518 | CG32245-RB | 487..1062 | 179..754 | 2880 | 100 | Plus |
CG32245-PC | 1197 | CG32245-RC | 167..741 | 180..754 | 2875 | 100 | Plus |
CG32245-PC | 1197 | CG32245-RC | 18..130 | 67..179 | 565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-RC | 3863 | CG42540-RC | 730..1467 | 17..754 | 3690 | 100 | Plus |
CG42540-RH | 3851 | CG42540-RH | 730..1455 | 17..754 | 3500 | 98.4 | Plus |
CG42540-RK | 3887 | CG42540-RK | 730..1491 | 17..754 | 3370 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4586578..4586785 | 444..651 | 1040 | 100 | Plus |
3L | 28110227 | 3L | 4578759..4578871 | 179..291 | 565 | 100 | Plus |
3L | 28110227 | 3L | 4563795..4563896 | 66..167 | 510 | 100 | Plus |
3L | 28110227 | 3L | 4580074..4580161 | 360..447 | 440 | 100 | Plus |
3L | 28110227 | 3L | 4579445..4579521 | 288..364 | 385 | 100 | Plus |
3L | 28110227 | 3L | 4588066..4588124 | 647..705 | 295 | 100 | Plus |
3L | 28110227 | 3L | 4558002..4558053 | 17..68 | 260 | 100 | Plus |
3L | 28110227 | 3L | 4589787..4589835 | 706..754 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:05:57 has no hits.
BO17373.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:14 Download gff for
BO17373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:58 Download gff for
BO17373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RC | 730..1467 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:19 Download gff for
BO17373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RC | 730..1467 | 17..754 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:19 Download gff for
BO17373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4558002..4558052 | 17..67 | 100 | -> | Plus |
3L | 4563797..4563904 | 68..179 | 93 | -> | Plus |
3L | 4578760..4578869 | 180..289 | 100 | -> | Plus |
3L | 4579447..4579519 | 290..362 | 100 | -> | Plus |
3L | 4580077..4580159 | 363..445 | 100 | -> | Plus |
3L | 4586580..4586783 | 446..649 | 100 | -> | Plus |
3L | 4588069..4588124 | 650..705 | 100 | -> | Plus |
3L | 4589787..4589835 | 706..754 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:58 Download gff for
BO17373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4579447..4579519 | 290..362 | 100 | -> | Plus |
arm_3L | 4580077..4580159 | 363..445 | 100 | -> | Plus |
arm_3L | 4558002..4558052 | 17..67 | 100 | -> | Plus |
arm_3L | 4563797..4563904 | 68..179 | 93 | -> | Plus |
arm_3L | 4578760..4578869 | 180..289 | 100 | -> | Plus |
arm_3L | 4586580..4586783 | 446..649 | 100 | -> | Plus |
arm_3L | 4588069..4588124 | 650..705 | 100 | -> | Plus |
arm_3L | 4589787..4589835 | 706..754 | 100 | | Plus |
BO17373.complete Sequence
1225 bp assembled on 2006-10-11
GenBank Submission: FJ634098
> BO17373.complete
GAAGTTATCAGTCGACATGGTCGAGGAGTTCCTGGAGAAGTTGCCAGAAA
TCGACACACGCTACGAGGATATTGTGCCCATGGAACAAGTGAGCTCGATG
GTCTCCAATGGCGGTGGCAGCGTGGCCATGCAGCGCGATGATGAGTACAG
GAATCGGATCATGAAAATACGTAGACTTGCGGACGAGGAAATCAGCGATA
AGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTTGTG
ATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCAGGA
GTACGAGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCGGTG
CCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTATGCC
CGTGTGGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGTTCT
CACAAAGGATAGCGTTACGGTTTCGGTGGATGCAGTGGTTTACTATCGGG
TATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCATTCG
ACCAGGCTACTGGCACAGACTACTCTACGAAACACAATGGGAACTCGGCA
TTTGCATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGCAGG
TTCAACTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGTGTG
GAAATCAAGGACGTGCGTCTGCCGGTGCAACTGCAACGTGCCATGGCCGC
GGAGGCAGAAGCCGCCCGGGAAGCCCGCGCCAAAGTCATCGCCGCCGAAG
GAGAACAGAAGGCGTCGAGGGCTCTTCGCGAGGCGTCCGAGGTGATTGGC
GATTCGCCGGCTGCCCTCCAACTGCGCTACCTTCAGACACTCAACACCAT
ATCTGCGGAGAAGAACTCGACGATTGTGTTCCCGCTGCCCATCGATTTAA
TAACATATTTCCTGAAGACCAACGAGGCCACAACGCAGCAAAATGCCCGA
GCAGCTGCGGCAGCAATTGGCAACACACCGCCGCCATTGCAACTGGCGCC
GCAGCAGCAGATGGGGCAGCAGCAACAGCCGCAGTACCAACAGCCGCAGC
AGCAGCAGCAGCAGTACCAACCGCAGCAGCAACAACAGCAGCAGCAGCAA
CAGCCGCAGCAGCAAGATCAACTCTATCAACAGGGGCAGCAGATCTCATC
AGCCATGGCAAGCTTTCTAGACCAT
BO17373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-RC | 1194 | CG42540-PC | 1..1191 | 17..1207 | 5955 | 100 | Plus |
CG42540-RH | 1182 | CG42540-PH | 1..1179 | 17..1207 | 5740 | 99 | Plus |
CG42540-RJ | 1506 | CG42540-PJ | 475..1503 | 179..1207 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-RC | 3863 | CG42540-RC | 730..1920 | 17..1207 | 5955 | 100 | Plus |
CG42540-RH | 3851 | CG42540-RH | 730..1908 | 17..1207 | 5740 | 99 | Plus |
CG42540-RJ | 4175 | CG42540-RJ | 1204..2232 | 179..1207 | 5145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4590026..4590352 | 881..1207 | 1635 | 100 | Plus |
3L | 28110227 | 3L | 4586578..4586785 | 444..651 | 1040 | 100 | Plus |
3L | 28110227 | 3L | 4589787..4589967 | 706..886 | 905 | 100 | Plus |
3L | 28110227 | 3L | 4578759..4578871 | 179..291 | 565 | 100 | Plus |
3L | 28110227 | 3L | 4563795..4563896 | 66..167 | 510 | 100 | Plus |
3L | 28110227 | 3L | 4580074..4580161 | 360..447 | 440 | 100 | Plus |
3L | 28110227 | 3L | 4579445..4579521 | 288..364 | 385 | 100 | Plus |
3L | 28110227 | 3L | 4588066..4588124 | 647..705 | 295 | 100 | Plus |
3L | 28110227 | 3L | 4558002..4558053 | 17..68 | 260 | 100 | Plus |
X | 23542271 | X | 19186315..19186413 | 743..841 | 210 | 80.8 | Plus |
Blast to na_te.dros performed 2014-11-28 08:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 1502..1565 | 955..892 | 121 | 69.2 | Minus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 514..661 | 834..682 | 114 | 54.9 | Minus |
BO17373.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:05 Download gff for
BO17373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-RA | 1..1194 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:42 Download gff for
BO17373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-RA | 728..1918 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:07 Download gff for
BO17373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RC | 730..1920 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:05 Download gff for
BO17373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32245-RA | 728..1921 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:49 Download gff for
BO17373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42540-RC | 730..1920 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:49 Download gff for
BO17373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4589787..4589967 | 706..886 | 100 | -> | Plus |
3L | 4590032..4590352 | 887..1209 | 99 | | Plus |
3L | 4558002..4558052 | 17..67 | 100 | -> | Plus |
3L | 4563797..4563904 | 68..179 | 93 | -> | Plus |
3L | 4578760..4578869 | 180..289 | 100 | -> | Plus |
3L | 4579447..4579519 | 290..362 | 100 | -> | Plus |
3L | 4580077..4580159 | 363..445 | 100 | -> | Plus |
3L | 4586580..4586783 | 446..649 | 100 | -> | Plus |
3L | 4588069..4588124 | 650..705 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:07 Download gff for
BO17373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4558002..4558052 | 17..67 | 100 | -> | Plus |
arm_3L | 4563797..4563904 | 68..179 | 93 | -> | Plus |
arm_3L | 4578760..4578869 | 180..289 | 100 | -> | Plus |
arm_3L | 4579447..4579519 | 290..362 | 100 | -> | Plus |
arm_3L | 4580077..4580159 | 363..445 | 100 | -> | Plus |
arm_3L | 4586580..4586783 | 446..649 | 100 | -> | Plus |
arm_3L | 4588069..4588124 | 650..705 | 100 | -> | Plus |
arm_3L | 4589787..4589967 | 706..886 | 100 | -> | Plus |
arm_3L | 4590032..4590352 | 887..1209 | 99 | | Plus |
BO17373.pep Sequence
Translation from 16 to 1225
> BO17373.pep
MVEEFLEKLPEIDTRYEDIVPMEQVSSMVSNGGGSVAMQRDDEYRNRIMK
IRRLADEEISDKASTCGKLLIFLSVALVIMTLPFSLFVCFKVVQEYERAV
IFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDSV
TVSVDAVVYYRVSNATVSIANVENAHHSTRLLAQTTLRNTMGTRHLHEIL
SERMTISGTMQVQLDEATDAWGIKVERVEIKDVRLPVQLQRAMAAEAEAA
REARAKVIAAEGEQKASRALREASEVIGDSPAALQLRYLQTLNTISAEKN
STIVFPLPIDLITYFLKTNEATTQQNARAAAAAIGNTPPPLQLAPQQQMG
QQQQPQYQQPQQQQQQYQPQQQQQQQQQQPQQQDQLYQQGQQISSAMASF
LDH
BO17373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42540-PC | 397 | CG32245-PA | 1..397 | 1..397 | 1983 | 100 | Plus |
CG42540-PI | 409 | CG42540-PI | 1..409 | 1..397 | 1957 | 96.8 | Plus |
CG42540-PH | 393 | CG42540-PH | 1..393 | 1..397 | 1946 | 98.7 | Plus |
CG42540-PK | 405 | CG42540-PK | 1..405 | 1..397 | 1939 | 96.8 | Plus |
CG42540-PB | 398 | CG32245-PC | 7..398 | 18..397 | 1870 | 96.7 | Plus |