Clone BO17373 Report

Search the DGRC for BO17373

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG42540-RC
Protein status:BO17373.pep: validated full length
Sequenced Size:1225

Clone Sequence Records

BO17373.3prime Sequence

781 bp (710 high quality bases) assembled on 2006-10-13

> BO17373.3prime
ATGGTCTAGAAAGCTTGCCATGGCTGATGAGATCTGCTGCCCCTGTTGAT
AGAGTTGATCTTGCTGCTGCGGCTGTTGCTGCTGCTGCTGTTGTTGCTGC
TGCGGTTGGTACTGCTGCTGCTGCTGCTGCGGCTGTTGGTACTGCGGCTG
TTGCTGCTGCCCCATCTGCTGCTGCGGCGCCAGTTGCAATGGCGGCGGTG
TGTTGCCAATTGCTGCCGCAGCTGCTCGGGCATTTTGCTGCGTTGTGGCC
TCGTTGGTCTTCAGGAAATATGTTATTAAATCGATGGGCAGCGGGAACAC
AATCGTCGAGTTCTTCTCCGCAGATATGGTGTTGAGTGTCTGAAGGTAGC
GCAGTTGGAGGGCAGCCGGCGAATCGCCAATCACCTCGGACGCCTCGCGA
AGAGCCCTCGACGCCTTCTGTTCTCCTTCGGCGGCGATGACTTTGGCGCG
GGCTTCCCGGGCGGCTTCTGCCTCCGCGGCCATGGCACGTTGCAGTTGCA
CCGGCAGACGCACGTCCTTGATTTCCACACGTTCAACTTTGATGCCCCAG
GCATCGGTGGCTTCGTCGAGTTGAACCTGCATTGTGCCGGAAATCGTCAT
ACGCTCGCTGAGTATCTCATGCAAATGCCGAGTTCCCATTGTGTTTCGTA
GAGTAGTCTGTGCCAGTAGCCTGGTCGAATGGTGAGCATTCTCCACGTTC
GCGATAGAGACGGTCGCATTTGATACCCGATAGTAAACCACTGCATCAAC
CGAAACCGTAACGCTATCCTTTGTGAAAACC

BO17373.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG32245-PB 1518 CG32245-RB 758..1515 776..19 3765 99.8 Minus
CG32245-PC 1197 CG32245-RC 437..1194 776..19 3765 99.8 Minus
CG32245-PA 1194 CG32245-RA 434..1191 776..19 3765 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-RG 3802 CG42540-RG 1097..1859 781..19 3785 99.7 Minus
CG42540-RJ 4175 CG42540-RJ 1470..2232 781..19 3785 99.7 Minus
CG42540-RI 3899 CG42540-RI 1194..1956 781..19 3785 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4590026..4590352 345..19 1635 100 Minus
3L 28110227 3L 4586579..4586785 781..575 1005 99 Minus
3L 28110227 3L 4589787..4589967 520..340 905 100 Minus
3L 28110227 3L 4588066..4588124 579..521 295 100 Minus
X 23542271 X 19186315..19186413 483..385 210 80.8 Minus
Blast to na_te.dros performed 2015-02-10 21:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tel 2485 Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). 1502..1565 271..334 121 69.2 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 514..661 392..544 114 54.9 Plus

BO17373.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:13 Download gff for BO17373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32245-PA 429..1194 15..781 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:16 Download gff for BO17373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42540-RI 1194..1959 15..781 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:46 Download gff for BO17373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42540-RI 1194..1959 15..781 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:46 Download gff for BO17373.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4586579..4586783 577..781 99 -> Minus
3L 4588069..4588124 521..576 100 -> Minus
3L 4589787..4589967 340..520 100 -> Minus
3L 4590032..4590355 15..339 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:16 Download gff for BO17373.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4586579..4586783 577..781 99 -> Minus
arm_3L 4588069..4588124 521..576 100 -> Minus
arm_3L 4589787..4589967 340..520 100 -> Minus
arm_3L 4590032..4590355 15..339 99   Minus

BO17373.5prime Sequence

754 bp (674 high quality bases) assembled on 2006-10-13

> BO17373.5prime
GAAGTTATCAGTCGACATGGTCGAGGAGTTCCTGGAGAAGTTGCCAGAAA
TCGACACACGCTACGAGGATATTGTGCCCATGGAACAAGTGAGCTCGATG
GTCTCCAATGGCGGTGGCAGCGTGGCCATGCAGCGCGATGATGAGTACAG
GAATCGGATCATGAAAATACGTAGACTTGCGGACGAGGAAATCAGCGATA
AGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTTGTG
ATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCAGGA
GTACGAGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCGGTG
CCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTATGCC
CGTGTGGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGTTCT
CACAAAGGATAGCGTTACGGTTTCGGTGGATGCAGTGGTTTACTATCGGG
TATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCATTCG
ACCAGGCTACTGGCACAGACTACTCTACGAAACACAATGGGAACTCGGCA
TTTGCATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGCAGG
TTCAACTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGTGTG
GAAATCAAGGACGTGCGTCTGCCGGTGCAACTGCAACGTGCCATGGCCGC
GGAG

BO17373.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32245-PA 1194 CG32245-RA 1..738 17..754 3690 100 Plus
CG32245-PB 1518 CG32245-RB 487..1062 179..754 2880 100 Plus
CG32245-PC 1197 CG32245-RC 167..741 180..754 2875 100 Plus
CG32245-PC 1197 CG32245-RC 18..130 67..179 565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-RC 3863 CG42540-RC 730..1467 17..754 3690 100 Plus
CG42540-RH 3851 CG42540-RH 730..1455 17..754 3500 98.4 Plus
CG42540-RK 3887 CG42540-RK 730..1491 17..754 3370 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4586578..4586785 444..651 1040 100 Plus
3L 28110227 3L 4578759..4578871 179..291 565 100 Plus
3L 28110227 3L 4563795..4563896 66..167 510 100 Plus
3L 28110227 3L 4580074..4580161 360..447 440 100 Plus
3L 28110227 3L 4579445..4579521 288..364 385 100 Plus
3L 28110227 3L 4588066..4588124 647..705 295 100 Plus
3L 28110227 3L 4558002..4558053 17..68 260 100 Plus
3L 28110227 3L 4589787..4589835 706..754 245 100 Plus
Blast to na_te.dros performed on 2015-01-30 18:05:57 has no hits.

BO17373.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:14 Download gff for BO17373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32245-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:58 Download gff for BO17373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42540-RC 730..1467 17..754 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:19 Download gff for BO17373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42540-RC 730..1467 17..754 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:19 Download gff for BO17373.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4558002..4558052 17..67 100 -> Plus
3L 4563797..4563904 68..179 93 -> Plus
3L 4578760..4578869 180..289 100 -> Plus
3L 4579447..4579519 290..362 100 -> Plus
3L 4580077..4580159 363..445 100 -> Plus
3L 4586580..4586783 446..649 100 -> Plus
3L 4588069..4588124 650..705 100 -> Plus
3L 4589787..4589835 706..754 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:58 Download gff for BO17373.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4579447..4579519 290..362 100 -> Plus
arm_3L 4580077..4580159 363..445 100 -> Plus
arm_3L 4558002..4558052 17..67 100 -> Plus
arm_3L 4563797..4563904 68..179 93 -> Plus
arm_3L 4578760..4578869 180..289 100 -> Plus
arm_3L 4586580..4586783 446..649 100 -> Plus
arm_3L 4588069..4588124 650..705 100 -> Plus
arm_3L 4589787..4589835 706..754 100   Plus

BO17373.complete Sequence

1225 bp assembled on 2006-10-11

GenBank Submission: FJ634098

> BO17373.complete
GAAGTTATCAGTCGACATGGTCGAGGAGTTCCTGGAGAAGTTGCCAGAAA
TCGACACACGCTACGAGGATATTGTGCCCATGGAACAAGTGAGCTCGATG
GTCTCCAATGGCGGTGGCAGCGTGGCCATGCAGCGCGATGATGAGTACAG
GAATCGGATCATGAAAATACGTAGACTTGCGGACGAGGAAATCAGCGATA
AGGCATCAACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTTGTG
ATAATGACGCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCAGGA
GTACGAGCGCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCGGTG
CCAAGGGCCCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTATGCC
CGTGTGGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGTTCT
CACAAAGGATAGCGTTACGGTTTCGGTGGATGCAGTGGTTTACTATCGGG
TATCAAATGCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCATTCG
ACCAGGCTACTGGCACAGACTACTCTACGAAACACAATGGGAACTCGGCA
TTTGCATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGCAGG
TTCAACTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGTGTG
GAAATCAAGGACGTGCGTCTGCCGGTGCAACTGCAACGTGCCATGGCCGC
GGAGGCAGAAGCCGCCCGGGAAGCCCGCGCCAAAGTCATCGCCGCCGAAG
GAGAACAGAAGGCGTCGAGGGCTCTTCGCGAGGCGTCCGAGGTGATTGGC
GATTCGCCGGCTGCCCTCCAACTGCGCTACCTTCAGACACTCAACACCAT
ATCTGCGGAGAAGAACTCGACGATTGTGTTCCCGCTGCCCATCGATTTAA
TAACATATTTCCTGAAGACCAACGAGGCCACAACGCAGCAAAATGCCCGA
GCAGCTGCGGCAGCAATTGGCAACACACCGCCGCCATTGCAACTGGCGCC
GCAGCAGCAGATGGGGCAGCAGCAACAGCCGCAGTACCAACAGCCGCAGC
AGCAGCAGCAGCAGTACCAACCGCAGCAGCAACAACAGCAGCAGCAGCAA
CAGCCGCAGCAGCAAGATCAACTCTATCAACAGGGGCAGCAGATCTCATC
AGCCATGGCAAGCTTTCTAGACCAT

BO17373.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-RC 1194 CG42540-PC 1..1191 17..1207 5955 100 Plus
CG42540-RH 1182 CG42540-PH 1..1179 17..1207 5740 99 Plus
CG42540-RJ 1506 CG42540-PJ 475..1503 179..1207 5145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-RC 3863 CG42540-RC 730..1920 17..1207 5955 100 Plus
CG42540-RH 3851 CG42540-RH 730..1908 17..1207 5740 99 Plus
CG42540-RJ 4175 CG42540-RJ 1204..2232 179..1207 5145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4590026..4590352 881..1207 1635 100 Plus
3L 28110227 3L 4586578..4586785 444..651 1040 100 Plus
3L 28110227 3L 4589787..4589967 706..886 905 100 Plus
3L 28110227 3L 4578759..4578871 179..291 565 100 Plus
3L 28110227 3L 4563795..4563896 66..167 510 100 Plus
3L 28110227 3L 4580074..4580161 360..447 440 100 Plus
3L 28110227 3L 4579445..4579521 288..364 385 100 Plus
3L 28110227 3L 4588066..4588124 647..705 295 100 Plus
3L 28110227 3L 4558002..4558053 17..68 260 100 Plus
X 23542271 X 19186315..19186413 743..841 210 80.8 Plus
Blast to na_te.dros performed 2014-11-28 08:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tel 2485 Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). 1502..1565 955..892 121 69.2 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 514..661 834..682 114 54.9 Minus

BO17373.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:05 Download gff for BO17373.complete
Subject Subject Range Query Range Percent Splice Strand
CG32245-RA 1..1194 17..1211 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:42 Download gff for BO17373.complete
Subject Subject Range Query Range Percent Splice Strand
CG32245-RA 728..1918 17..1209 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:07 Download gff for BO17373.complete
Subject Subject Range Query Range Percent Splice Strand
CG42540-RC 730..1920 17..1209 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:05 Download gff for BO17373.complete
Subject Subject Range Query Range Percent Splice Strand
CG32245-RA 728..1921 17..1211 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:49 Download gff for BO17373.complete
Subject Subject Range Query Range Percent Splice Strand
CG42540-RC 730..1920 17..1209 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:49 Download gff for BO17373.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4589787..4589967 706..886 100 -> Plus
3L 4590032..4590352 887..1209 99   Plus
3L 4558002..4558052 17..67 100 -> Plus
3L 4563797..4563904 68..179 93 -> Plus
3L 4578760..4578869 180..289 100 -> Plus
3L 4579447..4579519 290..362 100 -> Plus
3L 4580077..4580159 363..445 100 -> Plus
3L 4586580..4586783 446..649 100 -> Plus
3L 4588069..4588124 650..705 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:07 Download gff for BO17373.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4558002..4558052 17..67 100 -> Plus
arm_3L 4563797..4563904 68..179 93 -> Plus
arm_3L 4578760..4578869 180..289 100 -> Plus
arm_3L 4579447..4579519 290..362 100 -> Plus
arm_3L 4580077..4580159 363..445 100 -> Plus
arm_3L 4586580..4586783 446..649 100 -> Plus
arm_3L 4588069..4588124 650..705 100 -> Plus
arm_3L 4589787..4589967 706..886 100 -> Plus
arm_3L 4590032..4590352 887..1209 99   Plus

BO17373.pep Sequence

Translation from 16 to 1225

> BO17373.pep
MVEEFLEKLPEIDTRYEDIVPMEQVSSMVSNGGGSVAMQRDDEYRNRIMK
IRRLADEEISDKASTCGKLLIFLSVALVIMTLPFSLFVCFKVVQEYERAV
IFRLGRLMQGGAKGPGIFFILPCIDSYARVDLRTRTYDVPPQEVLTKDSV
TVSVDAVVYYRVSNATVSIANVENAHHSTRLLAQTTLRNTMGTRHLHEIL
SERMTISGTMQVQLDEATDAWGIKVERVEIKDVRLPVQLQRAMAAEAEAA
REARAKVIAAEGEQKASRALREASEVIGDSPAALQLRYLQTLNTISAEKN
STIVFPLPIDLITYFLKTNEATTQQNARAAAAAIGNTPPPLQLAPQQQMG
QQQQPQYQQPQQQQQQYQPQQQQQQQQQQPQQQDQLYQQGQQISSAMASF
LDH

BO17373.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG42540-PC 397 CG32245-PA 1..397 1..397 1983 100 Plus
CG42540-PI 409 CG42540-PI 1..409 1..397 1957 96.8 Plus
CG42540-PH 393 CG42540-PH 1..393 1..397 1946 98.7 Plus
CG42540-PK 405 CG42540-PK 1..405 1..397 1939 96.8 Plus
CG42540-PB 398 CG32245-PC 7..398 18..397 1870 96.7 Plus