Clone Sequence Records
BO17377.3prime Sequence
623 bp (623 high quality bases) assembled on 2006-10-13
> BO17377.3prime
ATGGTCTAGAAAGCTTGCAACCTGAACCAACTCGAACAGGGTGTGGTCCT
CTTCGTCACTATTCACGTCCTCGATGGCCATGGGCAGTGGTGTCAGCTCC
TGGTTGGCGCGGTCGCCCTGCACGCCGTACTTGCGCTCCGCCCGGGAAAG
TCGGAGCCTATAAACCCTCATAATAAGCAGCAGTATTGCAGTACTGGTGA
TTCCCACGAGGATGTAGACAACAGCCTGGCCCGGAAAGTCCACATCGGGG
GACATGGGAGAGCGTTCAACATGAACATCATCCACGGGAAGACCTCCCGG
AGGCTGCACCATTTCCGGTGCCTTGGCATCTCCTGGTGAAACTTGTGTGG
CAACCGAAGCACCTGGAGCAACCGGAGCAGGTCCGCCATCGTCTACGACC
ACCATAGAATCCTTTGGTCCTGCCGGAGGATTCTCTGCTTGCGATTTCTT
CACGACTGGCTTTTTGGCCTCCACCTCAGCAGCCGGCGCACTCTGCTCCG
CAATTACCACCGTCTTTTGGGGCGTCTGGGTGGCTGCGTCACAGGATTGC
TGGTGGAAGAACAGCAGCAGCAGTGCTGCAGCCACTAAGCAGAAGCAGCG
ACAGGACATGTCGACTGATAACT
BO17377.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-PB | 594 | CG12159-RB | 1..591 | 609..19 | 2955 | 100 | Minus |
CG12159-PA | 609 | CG12159-RA | 1..579 | 609..31 | 2895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-RB | 861 | CG12159-RB | 127..717 | 609..19 | 2955 | 100 | Minus |
CG12159-RA | 889 | CG12159-RA | 127..705 | 609..31 | 2895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7915900..7916352 | 157..609 | 2265 | 100 | Plus |
2R | 25286936 | 2R | 7915395..7915523 | 31..159 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:57:32 has no hits.
BO17377.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:16 Download gff for
BO17377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-PB | 1..594 | 15..609 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:05:34 Download gff for
BO17377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 127..720 | 15..609 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:18:33 Download gff for
BO17377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 127..720 | 15..609 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:18:33 Download gff for
BO17377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7915395..7915521 | 31..157 | 100 | <- | Plus |
2R | 7915901..7916352 | 158..609 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:05:34 Download gff for
BO17377.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3802900..3803026 | 31..157 | 100 | <- | Plus |
arm_2R | 3803406..3803857 | 158..609 | 100 | | Plus |
BO17377.5prime Sequence
623 bp (623 high quality bases) assembled on 2006-10-13
> BO17377.5prime
GAAGTTATCAGTCGACATGTCCTGTCGCTGCTTCTGCTTAGTGGCTGCAG
CACTGCTGCTGCTGTTCTTCCACCAGCAATCCTGTGACGCAGCCACCCAG
ACGCCCCAAAAGACGGTGGTAATTGCGGAGCAGAGTGCGCCGGCTGCTGA
GGTGGAGGCCAAAAAGCCAGTCGTGAAGAAATCGCAAGCAGAGAATCCTC
CGGCAGGACCAAAGGATTCTATGGTGGTCGTAGACGATGGCGGACCTGCT
CCGGTTGCTCCAGGTGCTTCGGTTGCCACACAAGTTTCACCAGGAGATGC
CAAGGCACCGGAAATGGTGCAGCCTCCGGGAGGTCTTCCCGTGGATGATG
TTCATGTTGAACGCTCTCCCATGTCCCCCGATGTGGACTTTCCGGGCCAG
GCTGTTGTCTACATCCTCGTGGGAATCACCAGTACTGCAATACTGCTGCT
TATTATGAGGGTTTATAGGCTCCGACTTTCCCGGGCGGAGCGCAAGTACG
GCGTGCAGGGCGACCGCGCCAACCAGGAGCTGACACCACTGCCCATGGCC
ATCGAGGACGTGAATAGTGACGAAGAGGACCACACCCTGTTCGAGTTGGT
TCAGGTTGCAAGCTTTCTAGACC
BO17377.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-PB | 594 | CG12159-RB | 1..591 | 17..607 | 2955 | 100 | Plus |
CG12159-PA | 609 | CG12159-RA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-RB | 861 | CG12159-RB | 127..717 | 17..607 | 2955 | 100 | Plus |
CG12159-RA | 889 | CG12159-RA | 127..705 | 17..595 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7915900..7916352 | 469..17 | 2265 | 100 | Minus |
2R | 25286936 | 2R | 7915395..7915523 | 595..467 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:54:35 has no hits.
BO17377.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:17 Download gff for
BO17377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-PB | 1..594 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:46:06 Download gff for
BO17377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 127..720 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:52 Download gff for
BO17377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 127..720 | 17..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:52 Download gff for
BO17377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7915395..7915521 | 469..595 | 100 | <- | Minus |
2R | 7915901..7916352 | 17..468 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:46:06 Download gff for
BO17377.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3802900..3803026 | 469..595 | 100 | <- | Minus |
arm_2R | 3803406..3803857 | 17..468 | 100 | | Minus |
BO17377.complete Sequence
625 bp assembled on 2007-10-17
GenBank Submission: FJ634099
> BO17377.complete
GAAGTTATCAGTCGACATGTCCTGTCGCTGCTTCTGCTTAGTGGCTGCAG
CACTGCTGCTGCTGTTCTTCCACCAGCAATCCTGTGACGCAGCCACCCAG
ACGCCCCAAAAGACGGTGGTAATTGCGGAGCAGAGTGCGCCGGCTGCTGA
GGTGGAGGCCAAAAAGCCAGTCGTGAAGAAATCGCAAGCAGAGAATCCTC
CGGCAGGACCAAAGGATTCTATGGTGGTCGTAGACGATGGCGGACCTGCT
CCGGTTGCTCCAGGTGCTTCGGTTGCCACACAAGTTTCACCAGGAGATGC
CAAGGCACCGGAAATGGTGCAGCCTCCGGGAGGTCTTCCCGTGGATGATG
TTCATGTTGAACGCTCTCCCATGTCCCCCGATGTGGACTTTCCGGGCCAG
GCTGTTGTCTACATCCTCGTGGGAATCACCAGTACTGCAATACTGCTGCT
TATTATGAGGGTTTATAGGCTCCGACTTTCCCGGGCGGAGCGCAAGTACG
GCGTGCAGGGCGACCGCGCCAACCAGGAGCTGACACCACTGCCCATGGCC
ATCGAGGACGTGAATAGTGACGAAGAGGACCACACCCTGTTCGAGTTGGT
TCAGGTTGCAAGCTTTCTAGACCAT
BO17377.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-RB | 594 | CG12159-PB | 1..591 | 17..607 | 2955 | 100 | Plus |
CG12159-RA | 609 | CG12159-PA | 1..579 | 17..595 | 2895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-RB | 861 | CG12159-RB | 127..717 | 17..607 | 2955 | 100 | Plus |
CG12159-RA | 889 | CG12159-RA | 127..705 | 17..595 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7915900..7916352 | 469..17 | 2265 | 100 | Minus |
2R | 25286936 | 2R | 7915395..7915523 | 595..467 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:15:23 has no hits.
BO17377.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:28 Download gff for
BO17377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 1..594 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:10 Download gff for
BO17377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 112..705 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:13 Download gff for
BO17377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 127..717 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:31 Download gff for
BO17377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 112..702 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:21:53 Download gff for
BO17377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12159-RB | 127..717 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:21:53 Download gff for
BO17377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7915901..7916352 | 17..468 | 100 | | Minus |
2R | 7915395..7915521 | 469..595 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:13 Download gff for
BO17377.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3802900..3803026 | 469..595 | 100 | <- | Minus |
arm_2R | 3803406..3803857 | 17..468 | 100 | | Minus |
BO17377.pep Sequence
Translation from 16 to 625
> BO17377.pep
MSCRCFCLVAAALLLLFFHQQSCDAATQTPQKTVVIAEQSAPAAEVEAKK
PVVKKSQAENPPAGPKDSMVVVDDGGPAPVAPGASVATQVSPGDAKAPEM
VQPPGGLPVDDVHVERSPMSPDVDFPGQAVVYILVGITSTAILLLIMRVY
RLRLSRAERKYGVQGDRANQELTPLPMAIEDVNSDEEDHTLFELVQVASF
LDH
BO17377.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12159-PB | 197 | CG12159-PB | 1..197 | 1..197 | 1004 | 100 | Plus |
CG12159-PA | 202 | CG12159-PA | 1..194 | 1..194 | 988 | 99.5 | Plus |