Clone BO17377 Report

Search the DGRC for BO17377

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG12159-RB
Protein status:BO17377.pep: validated full length
Sequenced Size:625

Clone Sequence Records

BO17377.3prime Sequence

623 bp (623 high quality bases) assembled on 2006-10-13

> BO17377.3prime
ATGGTCTAGAAAGCTTGCAACCTGAACCAACTCGAACAGGGTGTGGTCCT
CTTCGTCACTATTCACGTCCTCGATGGCCATGGGCAGTGGTGTCAGCTCC
TGGTTGGCGCGGTCGCCCTGCACGCCGTACTTGCGCTCCGCCCGGGAAAG
TCGGAGCCTATAAACCCTCATAATAAGCAGCAGTATTGCAGTACTGGTGA
TTCCCACGAGGATGTAGACAACAGCCTGGCCCGGAAAGTCCACATCGGGG
GACATGGGAGAGCGTTCAACATGAACATCATCCACGGGAAGACCTCCCGG
AGGCTGCACCATTTCCGGTGCCTTGGCATCTCCTGGTGAAACTTGTGTGG
CAACCGAAGCACCTGGAGCAACCGGAGCAGGTCCGCCATCGTCTACGACC
ACCATAGAATCCTTTGGTCCTGCCGGAGGATTCTCTGCTTGCGATTTCTT
CACGACTGGCTTTTTGGCCTCCACCTCAGCAGCCGGCGCACTCTGCTCCG
CAATTACCACCGTCTTTTGGGGCGTCTGGGTGGCTGCGTCACAGGATTGC
TGGTGGAAGAACAGCAGCAGCAGTGCTGCAGCCACTAAGCAGAAGCAGCG
ACAGGACATGTCGACTGATAACT

BO17377.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-PB 594 CG12159-RB 1..591 609..19 2955 100 Minus
CG12159-PA 609 CG12159-RA 1..579 609..31 2895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-RB 861 CG12159-RB 127..717 609..19 2955 100 Minus
CG12159-RA 889 CG12159-RA 127..705 609..31 2895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7915900..7916352 157..609 2265 100 Plus
2R 25286936 2R 7915395..7915523 31..159 645 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:57:32 has no hits.

BO17377.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:16 Download gff for BO17377.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12159-PB 1..594 15..609 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:05:34 Download gff for BO17377.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 127..720 15..609 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:18:33 Download gff for BO17377.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 127..720 15..609 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:18:33 Download gff for BO17377.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7915395..7915521 31..157 100 <- Plus
2R 7915901..7916352 158..609 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:05:34 Download gff for BO17377.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3802900..3803026 31..157 100 <- Plus
arm_2R 3803406..3803857 158..609 100   Plus

BO17377.5prime Sequence

623 bp (623 high quality bases) assembled on 2006-10-13

> BO17377.5prime
GAAGTTATCAGTCGACATGTCCTGTCGCTGCTTCTGCTTAGTGGCTGCAG
CACTGCTGCTGCTGTTCTTCCACCAGCAATCCTGTGACGCAGCCACCCAG
ACGCCCCAAAAGACGGTGGTAATTGCGGAGCAGAGTGCGCCGGCTGCTGA
GGTGGAGGCCAAAAAGCCAGTCGTGAAGAAATCGCAAGCAGAGAATCCTC
CGGCAGGACCAAAGGATTCTATGGTGGTCGTAGACGATGGCGGACCTGCT
CCGGTTGCTCCAGGTGCTTCGGTTGCCACACAAGTTTCACCAGGAGATGC
CAAGGCACCGGAAATGGTGCAGCCTCCGGGAGGTCTTCCCGTGGATGATG
TTCATGTTGAACGCTCTCCCATGTCCCCCGATGTGGACTTTCCGGGCCAG
GCTGTTGTCTACATCCTCGTGGGAATCACCAGTACTGCAATACTGCTGCT
TATTATGAGGGTTTATAGGCTCCGACTTTCCCGGGCGGAGCGCAAGTACG
GCGTGCAGGGCGACCGCGCCAACCAGGAGCTGACACCACTGCCCATGGCC
ATCGAGGACGTGAATAGTGACGAAGAGGACCACACCCTGTTCGAGTTGGT
TCAGGTTGCAAGCTTTCTAGACC

BO17377.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-PB 594 CG12159-RB 1..591 17..607 2955 100 Plus
CG12159-PA 609 CG12159-RA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-RB 861 CG12159-RB 127..717 17..607 2955 100 Plus
CG12159-RA 889 CG12159-RA 127..705 17..595 2895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7915900..7916352 469..17 2265 100 Minus
2R 25286936 2R 7915395..7915523 595..467 645 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:54:35 has no hits.

BO17377.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:17 Download gff for BO17377.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12159-PB 1..594 17..611 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:46:06 Download gff for BO17377.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 127..720 17..611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:52 Download gff for BO17377.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 127..720 17..611 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:52 Download gff for BO17377.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7915395..7915521 469..595 100 <- Minus
2R 7915901..7916352 17..468 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:46:06 Download gff for BO17377.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3802900..3803026 469..595 100 <- Minus
arm_2R 3803406..3803857 17..468 100   Minus

BO17377.complete Sequence

625 bp assembled on 2007-10-17

GenBank Submission: FJ634099

> BO17377.complete
GAAGTTATCAGTCGACATGTCCTGTCGCTGCTTCTGCTTAGTGGCTGCAG
CACTGCTGCTGCTGTTCTTCCACCAGCAATCCTGTGACGCAGCCACCCAG
ACGCCCCAAAAGACGGTGGTAATTGCGGAGCAGAGTGCGCCGGCTGCTGA
GGTGGAGGCCAAAAAGCCAGTCGTGAAGAAATCGCAAGCAGAGAATCCTC
CGGCAGGACCAAAGGATTCTATGGTGGTCGTAGACGATGGCGGACCTGCT
CCGGTTGCTCCAGGTGCTTCGGTTGCCACACAAGTTTCACCAGGAGATGC
CAAGGCACCGGAAATGGTGCAGCCTCCGGGAGGTCTTCCCGTGGATGATG
TTCATGTTGAACGCTCTCCCATGTCCCCCGATGTGGACTTTCCGGGCCAG
GCTGTTGTCTACATCCTCGTGGGAATCACCAGTACTGCAATACTGCTGCT
TATTATGAGGGTTTATAGGCTCCGACTTTCCCGGGCGGAGCGCAAGTACG
GCGTGCAGGGCGACCGCGCCAACCAGGAGCTGACACCACTGCCCATGGCC
ATCGAGGACGTGAATAGTGACGAAGAGGACCACACCCTGTTCGAGTTGGT
TCAGGTTGCAAGCTTTCTAGACCAT

BO17377.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-RB 594 CG12159-PB 1..591 17..607 2955 100 Plus
CG12159-RA 609 CG12159-PA 1..579 17..595 2895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-RB 861 CG12159-RB 127..717 17..607 2955 100 Plus
CG12159-RA 889 CG12159-RA 127..705 17..595 2895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7915900..7916352 469..17 2265 100 Minus
2R 25286936 2R 7915395..7915523 595..467 645 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:15:23 has no hits.

BO17377.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:28 Download gff for BO17377.complete
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 1..594 17..611 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:10 Download gff for BO17377.complete
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 112..705 17..611 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:13 Download gff for BO17377.complete
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 127..717 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:31 Download gff for BO17377.complete
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 112..702 17..609 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:21:53 Download gff for BO17377.complete
Subject Subject Range Query Range Percent Splice Strand
CG12159-RB 127..717 17..609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:21:53 Download gff for BO17377.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7915901..7916352 17..468 100   Minus
2R 7915395..7915521 469..595 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:13 Download gff for BO17377.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3802900..3803026 469..595 100 <- Minus
arm_2R 3803406..3803857 17..468 100   Minus

BO17377.pep Sequence

Translation from 16 to 625

> BO17377.pep
MSCRCFCLVAAALLLLFFHQQSCDAATQTPQKTVVIAEQSAPAAEVEAKK
PVVKKSQAENPPAGPKDSMVVVDDGGPAPVAPGASVATQVSPGDAKAPEM
VQPPGGLPVDDVHVERSPMSPDVDFPGQAVVYILVGITSTAILLLIMRVY
RLRLSRAERKYGVQGDRANQELTPLPMAIEDVNSDEEDHTLFELVQVASF
LDH

BO17377.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12159-PB 197 CG12159-PB 1..197 1..197 1004 100 Plus
CG12159-PA 202 CG12159-PA 1..194 1..194 988 99.5 Plus