Clone Sequence Records
BO17378.3prime Sequence
717 bp (715 high quality bases) assembled on 2006-10-13
> BO17378.3prime
ATGGTCTAGAAAGCTTGCCTTTCCCAATGCAATCGCCTCTTCCACCGTAT
CCGGTAGTTTTCGGTTGAAGGTTTCCGGCAGTAACAGCGAGAGGAGTCCA
GCCACGAGCGATAGTGTCCCGAAAAGTAGCAGAGGTAGTGGGTCATAGTA
CGAAGCCAATAGGGGCACAAATGGAGCCAGCATTGCACCGAAGCGGGCAA
ATGTGGACATCACACCAACGCCGCCGCTCCTAATGACCGTGGGCATCATT
TCCGCTGTGAACGTGTAGATGACTGCAAAGGAGGAGGTGATGCCCAGTTT
TCCGACCAGAAAGAGCGTCACAACCAGCCAGTTGGCACCTAGTGTAACGA
ATCCGCTGGCCACACACGTGATAGAGCAGAGCAGCAAGGAGCCAGAAAGT
GCCACACGTCGTCCAAATCTCCGCAGGAACAGCCATGCGAGGCTGTAGCC
GGGTATCTCTACGAGGCAAACCAGGGCGAAGTTTAGGTACTTGTTGCCAC
TCAAACTGGTGGCGTTGAGCGAGAGTCCATAGTAGACGATGGCATTGACG
GCCCAAATCAGCAGCAATATGGCGTATCTGCCCATCAAAATGTGAGAGCG
CGCCACCTCCTTGACGGCCAACCAGATCTTGTCATCCTTCTTTACGTGCA
GGCCACCCTCGACATCATCCTCTTGGCCCGTTTCTGCATCAAGCTCCTGT
TGCTTGAAGCTGGCCAT
BO17378.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4630-PA | 1692 | CG4630-RA | 991..1689 | 717..19 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4630-RA | 2121 | CG4630-RA | 1309..2007 | 717..19 | 3495 | 100 | Minus |
| CG4630-RB | 2074 | CG4630-RB | 1205..1583 | 717..339 | 1895 | 100 | Minus |
| CG4630-RB | 2074 | CG4630-RB | 1641..1960 | 338..19 | 1600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13216761..13217045 | 433..717 | 1425 | 100 | Plus |
| 2R | 25286936 | 2R | 13215855..13215967 | 45..157 | 565 | 100 | Plus |
| 2R | 25286936 | 2R | 13216157..13216263 | 236..342 | 535 | 100 | Plus |
| 2R | 25286936 | 2R | 13216602..13216698 | 337..433 | 485 | 100 | Plus |
| 2R | 25286936 | 2R | 13216022..13216104 | 156..238 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:24:03 has no hits.
BO17378.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:18 Download gff for
BO17378.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-PA | 991..1692 | 16..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:53:05 Download gff for
BO17378.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 1309..2007 | 19..717 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:05:39 Download gff for
BO17378.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 1309..2007 | 19..717 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:05:39 Download gff for
BO17378.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13215773..13215799 | 19..45 | 100 | <- | Plus |
| 2R | 13215856..13215966 | 46..156 | 100 | <- | Plus |
| 2R | 13216023..13216103 | 157..237 | 100 | <- | Plus |
| 2R | 13216159..13216259 | 238..338 | 100 | <- | Plus |
| 2R | 13216604..13216697 | 339..432 | 100 | <- | Plus |
| 2R | 13216761..13217045 | 433..717 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:53:05 Download gff for
BO17378.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9103278..9103304 | 19..45 | 100 | <- | Plus |
| arm_2R | 9103361..9103471 | 46..156 | 100 | <- | Plus |
| arm_2R | 9103528..9103608 | 157..237 | 100 | <- | Plus |
| arm_2R | 9103664..9103764 | 238..338 | 100 | <- | Plus |
| arm_2R | 9104109..9104202 | 339..432 | 100 | <- | Plus |
| arm_2R | 9104266..9104550 | 433..717 | 100 | | Plus |
BO17378.5prime Sequence
797 bp (731 high quality bases) assembled on 2006-10-13
> BO17378.5prime
GAAGTTATCAGTCGACATGTCAGCTCCAGCGGCAGGTGCGGCGTCTGCCG
TCCTGGACTTTGACGACATCCTGGTCGAGATCGGAGAATTCGGACGCTTT
CAGCGGCGGAACTATCTGCTCATATGCTTGCCCGTACTTTTTGCTGCCGC
CAATAGCCTGTCGTATGTTTTCACGGCAGGATCGCCGACCTATCGATGCT
ACGTGCCCGAGTGCGATAAGCTGGTTGATGCGGAATATGGAGCGAATTGG
GTGTCGATTGCCGTGCCCGGAAGCTGGAGCAAGCGGGGCCATTTTACGCC
GTCCACCTGCGAAAGGTTCGTGGCGAACGGTGACCATCTTGAGTCCTCAT
CGGATCCTTGGAGTGCGTGGCCTTTGGATCAGTGCTTTGCTGAGAATTTC
ACGACGGAAACGGAGCGATGCAATCAGTTTGTGTACGGCAGTTCGGAACG
GACCATTGTGCAGCAGTGGGGACTACAATGCCCCGAGAATCTCTGGAAGC
TGGCATTCGTGGGCACTATACACTTTGCTGGTCTGGTTGTGGGAACAGCT
CTATCCGGCTACCTCGCCGATCGATATGGACGCAAGCACATTTTCCTCTT
CTGCATCGTGTTCATGGCGTTGACGGGAGTGGCGCAGGCGCTGTCCTGGG
ACTACATAAGTTTCCTGTTCTTTGCCTTGCTGAATGCAGTGGGCACTTCC
GGTGTCTATCCGCTGGCTTTCATCATTGGGGTGGAAATGGTCGGGCCGCG
GAAACGCGAAATGCCCTCCATTGTGCTCAACTACTTCTATGCCGTGG
BO17378.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4630-PA | 1692 | CG4630-RA | 1..781 | 17..797 | 3880 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4630-RB | 2074 | CG4630-RB | 215..995 | 17..797 | 3890 | 99.9 | Plus |
| CG4630-RA | 2121 | CG4630-RA | 319..1099 | 17..797 | 3890 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13217589..13218145 | 573..17 | 2785 | 100 | Minus |
| 2R | 25286936 | 2R | 13217255..13217479 | 797..573 | 1110 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:52:48 has no hits.
BO17378.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:18 Download gff for
BO17378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-PA | 1..781 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:33:15 Download gff for
BO17378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 314..1099 | 8..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:49 Download gff for
BO17378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 314..1099 | 8..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:49 Download gff for
BO17378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13217255..13217478 | 574..797 | 99 | <- | Minus |
| 2R | 13217589..13218150 | 8..573 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:33:15 Download gff for
BO17378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9104760..9104983 | 574..797 | 99 | <- | Minus |
| arm_2R | 9105094..9105655 | 8..573 | 99 | | Minus |
BO17378.complete Sequence
1723 bp assembled on 2006-12-18
GenBank Submission: FJ634100
> BO17378.complete
GAAGTTATCAGTCGACATGTCAGCTCCAGCGGCAGGTGCGGCGTCTGCCG
TCCTGGACTTTGACGACATCCTGGTCGAGATCGGAGAATTCGGACGCTTT
CAGCGGCGGAACTATCTGCTCATATGCTTGCCCGTACTTTTTGCTGCCGC
CAATAGCCTGTCGTATGTTTTCACGGCAGGATCGCCGACCTATCGATGCT
ACGTGCCCGAGTGCGATAAGCTGGTTGATGCGGAATATGGAGCGAATTGG
GTGTCGATTGCCGTGCCCGGAAGCTGGAGCAAGCGGGGCCATTTTACGCC
GTCCACCTGCGAAAGGTTCGTGGCGAACGGTGACCATCTTGAGTCCTCAT
CGGATCCTTGGAGTGCGTGGCCTTTGGATCAGTGCTTTGCTGAGAATTTC
ACGACGGAAACGGAGCGATGCAATCAGTTTGTGTACGGCAGTTCGGAACG
GACCATTGTGCAGCAGTGGGGACTACAATGCCCCGAGAATCTCTGGAAGC
TGGCATTCGTGGGCACTATACACTTTGCTGGTCTGGTTGTGGGAACAGCT
CTATCCGGCTACCTCGCCGATCGATATGGACGCAAGCACATTTTCCTCTT
CTGCATCGTGTTCATGGCGTTGACGGGAGTGGCGCAGGCGCTGTCCTGGG
ACTACATAAGTTTCCTGTTCTTTGCCTTGCTGAATGCAGTGGGCACTTCC
GGTGTCTATCCGCTGGCTTTCATCATTGGGGTGGAAATGGTCGGGCCGCG
GAAACGCGAAATGTCCTCCATTGTGCTCAACTACTTCTATGCCGTGGGCG
AGGCACTCCTGGGCCTGTCCGTTTTCCTGCCCGACTGGCGGCAATTGCAA
CTGGCGCTCTCTGTACCGCCGCTCATCTGCGTGGCCTACTTTTGGCTGGT
ACCGGAGTCCGTCCGGTGGCTGCTGGCTCGTAACCGGCGGGAGCAAGCGG
GAGTCATCATCCGGCGGGCCGCAAAGGTTAACAGGCGAGACATCTCCGTC
GAGCTGATGGCCAGCTTCAAGCAACAGGAGCTTGATGCAGAAACGGGCCA
AGAGGATGATGTCGAGGGTGGCCTGCACGTAAAGAAGGATGACAAGATCT
GGTTGGCCGTCAAGGAGGTGGCGCGCTCTCACATTTTGATGGGCAGATAC
GCCATATTGCTGCTGATTTGGGCCGTCAATGCCATCGTCTACTATGGACT
CTCGCTCAACGCCACCAGTTTGAGTGGCAACAAGTACCTAAACTTCGCCC
TGGTTTGCCTCGTAGAGATACCCGGCTACAGCCTCGCATGGCTGTTCCTG
CGGAGATTTGGACGACGTGTGGCACTTTCTGGCTCCTTGCTGCTCTGCTC
TATCACGTGTGTGGCCAGCGGATTCGTTACACTAGGTGCCAACTGGCTGG
TTGTGACGCTCTTTCTGGTCGGAAAACTGGGCATCACCTCCTCCTTTGCA
GTCATCTACACGTTCACAGCGGAAATGATGCCCACGGTCATTAGGAGCGG
CGGCGTTGGTGTGATGTCCACATTTGCCCGCTTCGGTGCAATGCTGGCTC
CATTTGTGCCCCTATTGGCTTCGTACTATGACCCACTACCTCTGCTACTT
TTCGGGACACTATCGCTCGTGGCTGGACTCCTCTCGCTGTTACTGCCGGA
AACCTTCAACCGAAAACTACCGGATACGGTGGAAGAGGCGATTGCATTGG
GAAAGGCAAGCTTTCTAGACCAT
BO17378.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4630-RA | 1692 | CG4630-PA | 1..1689 | 17..1705 | 8445 | 100 | Plus |
| CG4630-RB | 1749 | CG4630-PB | 1..1369 | 17..1385 | 6845 | 100 | Plus |
| CG4630-RB | 1749 | CG4630-PB | 1427..1746 | 1386..1705 | 1600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4630-RA | 2121 | CG4630-RA | 319..2007 | 17..1705 | 8445 | 100 | Plus |
| CG4630-RB | 2074 | CG4630-RB | 215..1583 | 17..1385 | 6845 | 100 | Plus |
| CG4630-RB | 2074 | CG4630-RB | 1641..1960 | 1386..1705 | 1600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13216761..13217479 | 1291..573 | 3595 | 100 | Minus |
| 2R | 25286936 | 2R | 13217589..13218145 | 573..17 | 2785 | 100 | Minus |
| 2R | 25286936 | 2R | 13215855..13215967 | 1679..1567 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 13216157..13216263 | 1488..1382 | 535 | 100 | Minus |
| 2R | 25286936 | 2R | 13216602..13216698 | 1387..1291 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 13216022..13216104 | 1568..1486 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:43:24 has no hits.
BO17378.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:22 Download gff for
BO17378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 1..1692 | 17..1708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:01 Download gff for
BO17378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 314..2007 | 8..1705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:10 Download gff for
BO17378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 319..2007 | 17..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:22 Download gff for
BO17378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 314..2007 | 8..1705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:28 Download gff for
BO17378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 319..2007 | 17..1707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:28 Download gff for
BO17378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13216023..13216103 | 1487..1567 | 100 | <- | Minus |
| 2R | 13216159..13216259 | 1386..1486 | 100 | <- | Minus |
| 2R | 13216604..13216697 | 1292..1385 | 100 | <- | Minus |
| 2R | 13215770..13215799 | 1679..1707 | 93 | <- | Minus |
| 2R | 13215856..13215966 | 1568..1678 | 100 | <- | Minus |
| 2R | 13216761..13217478 | 574..1291 | 100 | <- | Minus |
| 2R | 13217589..13218145 | 17..573 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:10 Download gff for
BO17378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9103275..9103304 | 1679..1707 | 93 | <- | Minus |
| arm_2R | 9103361..9103471 | 1568..1678 | 100 | <- | Minus |
| arm_2R | 9103528..9103608 | 1487..1567 | 100 | <- | Minus |
| arm_2R | 9103664..9103764 | 1386..1486 | 100 | <- | Minus |
| arm_2R | 9104109..9104202 | 1292..1385 | 100 | <- | Minus |
| arm_2R | 9104266..9104983 | 574..1291 | 100 | <- | Minus |
| arm_2R | 9105094..9105650 | 17..573 | 100 | | Minus |
BO17378.pep Sequence
Translation from 16 to 1723
> BO17378.pep
MSAPAAGAASAVLDFDDILVEIGEFGRFQRRNYLLICLPVLFAAANSLSY
VFTAGSPTYRCYVPECDKLVDAEYGANWVSIAVPGSWSKRGHFTPSTCER
FVANGDHLESSSDPWSAWPLDQCFAENFTTETERCNQFVYGSSERTIVQQ
WGLQCPENLWKLAFVGTIHFAGLVVGTALSGYLADRYGRKHIFLFCIVFM
ALTGVAQALSWDYISFLFFALLNAVGTSGVYPLAFIIGVEMVGPRKREMS
SIVLNYFYAVGEALLGLSVFLPDWRQLQLALSVPPLICVAYFWLVPESVR
WLLARNRREQAGVIIRRAAKVNRRDISVELMASFKQQELDAETGQEDDVE
GGLHVKKDDKIWLAVKEVARSHILMGRYAILLLIWAVNAIVYYGLSLNAT
SLSGNKYLNFALVCLVEIPGYSLAWLFLRRFGRRVALSGSLLLCSITCVA
SGFVTLGANWLVVTLFLVGKLGITSSFAVIYTFTAEMMPTVIRSGGVGVM
STFARFGAMLAPFVPLLASYYDPLPLLLFGTLSLVAGLLSLLLPETFNRK
LPDTVEEAIALGKASFLDH
BO17378.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4630-PA | 563 | CG4630-PA | 1..563 | 1..563 | 2914 | 100 | Plus |
| CG4630-PB | 582 | CG4630-PB | 1..582 | 1..563 | 2878 | 96.6 | Plus |
| CG7442-PA | 568 | CG7442-PA | 11..548 | 4..562 | 950 | 39.4 | Plus |
| CG7458-PA | 572 | CG7458-PA | 39..564 | 16..564 | 936 | 38.4 | Plus |
| Orct-PB | 548 | CG6331-PB | 1..523 | 13..563 | 881 | 34.8 | Plus |
