Clone Sequence Records
BO17379.3prime Sequence
838 bp (728 high quality bases) assembled on 2006-10-13
> BO17379.3prime
ATGGTCTAGAAAGCTTGCCTTTTCTACTTCCTCGTCGACGAATGTAATCA
CGGCCGCTCCCTTAGCAACGTTATCGCCCGCGGCTCCTCCAATAGACTTA
ATGGTGGCGTCCTTTGGAGCTTTTAGAATGTGTTCCATTTTCATGGCAAT
AAGCACTGCCAAGTTTTCGCCCTTCTTGACCTTGTCACCGGGCTTTACCA
GCACCTTCTCTAAAATCCCGGGCATGGGAGCCACTATGCGAGACCCAACT
GCACCCAATTGATCGCCCTGGGCACTTAAGAATTTCGGCTGTCCCACCTC
AAAATCGACCTTGCCACTTTCCGAAAACAAAGAGACACTAGTGCCATCAA
TACTAGCATTATATGTGGTGACGTTGCTATTGATATTGGCACGAATTTTT
AGACGACTTCCATCCTGAACTCTTTCGACCTTTGCATCCTGCCAGTCGCC
ATTATCCACCTGAATTTGCATATCCTCGCCATCAAACTTGACAGCCACAG
AATAGACCTTCTCATTGGCTTTCAAGTCATATCTGCGAACCAAAGAGTAA
TTCAGACGAGCGTTAGGGGTGGCAACAAATGGATCCTGATCTTTGTTTCC
GTTCCTAAAGGCTGCCTGCAACTCGTTTAAGACTAGCGCCAAAGCAGCTT
GGCTGACTTGCTGCGGACTGATGATAATTGGCGGAAATAGAGTATCGAAC
TGCTCATCGATAAAGCCAGTGTGCACATTGGCCAGCTGAAACTCAGGATG
CGACGCAAGGTCGATGAGGAAATTAATGTTAGTGTCCAGACAGATATATG
ATATTCACCCCAGCGGGCAACCAATGAGTTAAGCGCTT
BO17379.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-PA | 2097 | CG2118-RA | 1274..2094 | 838..19 | 4015 | 99.6 | Minus |
| CG2118-PB | 1905 | CG2118-RB | 1082..1902 | 838..19 | 4015 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RD | 2166 | CG2118-RD | 1163..1983 | 838..19 | 4050 | 99.6 | Minus |
| CG2118-RC | 2920 | CG2118-RC | 1563..2383 | 838..19 | 4050 | 99.6 | Minus |
| CG2118-RB | 2297 | CG2118-RB | 1294..2114 | 838..19 | 4050 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31791793..31792077 | 507..791 | 1425 | 100 | Plus |
| 3R | 32079331 | 3R | 31791550..31791738 | 319..507 | 945 | 100 | Plus |
| 3R | 32079331 | 3R | 31791314..31791485 | 147..318 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 31791129..31791257 | 19..147 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:24:44 has no hits.
BO17379.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:19 Download gff for
BO17379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-PB | 1082..1905 | 15..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:53:10 Download gff for
BO17379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 1294..2117 | 15..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:07:55 Download gff for
BO17379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 1294..2117 | 15..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:07:55 Download gff for
BO17379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31791550..31791737 | 319..506 | 100 | <- | Plus |
| 3R | 31791126..31791256 | 15..146 | 98 | <- | Plus |
| 3R | 31791314..31791485 | 147..318 | 100 | <- | Plus |
| 3R | 31791793..31792084 | 507..797 | 99 | <- | Plus |
| 3R | 31792144..31792184 | 798..838 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:53:10 Download gff for
BO17379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27616848..27616978 | 15..146 | 98 | <- | Plus |
| arm_3R | 27617036..27617207 | 147..318 | 100 | <- | Plus |
| arm_3R | 27617272..27617459 | 319..506 | 100 | <- | Plus |
| arm_3R | 27617515..27617806 | 507..797 | 99 | <- | Plus |
| arm_3R | 27617866..27617906 | 798..838 | 95 | | Plus |
BO17379.5prime Sequence
821 bp (768 high quality bases) assembled on 2006-10-13
> BO17379.5prime
GAAGTTATCAGTCGACATGTACGCCAGACTGCTGCGAAACTTCGGCGCAA
ACGCCAGGTGCTTTGCAACAGAAGCCAGCCCAAAAGTTCGGCCTATCAGC
AAGATCCTTATTTCAAATCGTGGTGAGATCGCATGCAGGGTGATTCGAAC
CGCACGCAAGCTGGGAGTTCGTACCGTGGCCGTGTTCTCGGATCCGGACG
AGAAGAGCATGCACACGCAGTTGGCAGACGAGTCGTACCGCGTGGGGGAA
GCTGCCTCCTCGGCTTCCTATCTTCGCGGTGAACGCATCCTGGACATAGC
CAAGCGTTCGGGCGCCCAGGCCATCCACCCAGGCTACGGCTTCCTCTCCG
AGTCCGTCGAGTTTGCCGAGTTGTGCCAGCGTGAGGGCATCATCTTCATG
GGTCCGCCCAGTTCCGCCATCCGGGACATGGGGATTAAGAGCACCAGCAA
GGCCATAATGGCCGCTGCTGGGGTGCCGATCATCAATGGATACCATGGCG
ATGATCAGTCAGATGAGTGTTTGCAGCGAGAAGCCGACAAAATTGGCTTT
CCCTTGATGATTAAAGCCGTCCGCGGCGGCGGAGGCAAAGGCATGAGAAT
CGCAGAAAAACCGGACGACTTCCTCACCGCTCTGAACTCAGCTCGCACCG
AGTCCGAGAAGTCGTTTGGCGACAGCTCTGTGCTTCTGGAGCGGTACGTC
CGATCTCCACGCCACGTAGAGGTTCAAGTATTTGCGGATCAGTATGGTGA
TGCTGTCTATCTGTGGGAAAGAGATTGCTCCGTGCAAAGACGTCATCAAA
AGATTATTGAAGAGGCGCCAG
BO17379.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-PA | 2097 | CG2118-RA | 1..805 | 17..821 | 4025 | 100 | Plus |
| CG2118-PB | 1905 | CG2118-RB | 1..613 | 209..821 | 3065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RC | 2920 | CG2118-RC | 290..1094 | 17..821 | 4025 | 100 | Plus |
| CG2118-RA | 2387 | CG2118-RA | 111..915 | 17..821 | 4025 | 100 | Plus |
| CG2118-RB | 2297 | CG2118-RB | 31..825 | 27..821 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31792707..31793473 | 821..55 | 3835 | 100 | Minus |
| 3R | 32079331 | 3R | 31793575..31793618 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:25:09 has no hits.
BO17379.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:20 Download gff for
BO17379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-PA | 1..805 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:53:12 Download gff for
BO17379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..915 | 17..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:09:32 Download gff for
BO17379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..915 | 17..821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:09:32 Download gff for
BO17379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31792707..31793470 | 58..821 | 100 | <- | Minus |
| 3R | 31793578..31793618 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:53:12 Download gff for
BO17379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27618429..27619192 | 58..821 | 100 | <- | Minus |
| arm_3R | 27619300..27619340 | 17..57 | 100 | | Minus |
BO17379.complete Sequence
2128 bp assembled on 2007-03-23
GenBank Submission: FJ634101
> BO17379.complete
GAAGTTATCAGTCGACATGTACGCCAGACTGCTGCGAAACTTCGGCGCAA
ACGCCAGGTGCTTTGCAACAGAAGCCAGCCCAAAAGTTCGGCCTATCAGC
AAGATCCTTATTTCAAATCGTGGTGAGATCGCATGCAGGGTGATTCGAAC
CGCACGCAAGCTGGGAGTTCGTACCGTGGCCGTGTTCTCGGATCCGGACG
AGAAGAGCATGCACACGCAGTTGGCAGACGAGTCGTACCGCGTGGGGGAA
GCTGCCTCCTCGGCTTCCTATCTTCGCGGTGAACGCATCCTGGACATAGC
CAAGCGTTCGGGCGCCCAGGCCATCCACCCAGGCTACGGCTTCCTCTCCG
AGTCCGTCGAGTTTGCCGAGTTGTGCCAGCGTGAGGGCATCATCTTCATG
GGTCCGCCCAGTTCCGCCATCCGGGACATGGGGATTAAGAGCACCAGCAA
GGCCATAATGGCCGCTGCTGGGGTGCCGATCATCAATGGATACCATGGCG
ATGATCAGTCAGATGAGTGTTTGCAGCGAGAAGCCGACAAAATTGGCTTT
CCCTTGATGATTAAAGCCGTCCGCGGCGGCGGAGGCAAAGGCATGAGAAT
CGCAGAAAAACCGGACGACTTCCTCACCGCTCTGAACTCAGCTCGCACCG
AGTCCGAGAAGTCGTTTGGCGACAGCTCTGTGCTTCTGGAGCGGTACGTC
CGATCTCCACGCCACGTAGAGGTTCAAGTATTTGCGGATCAGTATGGTGA
TGCTGTCTATCTGTGGGAAAGAGATTGCTCCGTGCAAAGACGTCATCAAA
AGATTATTGAAGAGGCGCCAGCTCCAGGTTTGTCGGAAGATTTGCGTCGT
GAGCTGGGCGAGGCTGCTGTTCGTGCAGCGAAAGCTGTGGGCTACGTAGG
AGCTGGCACCGTGGAGTTCATTCTAGACAAAGAAGATCTCTCTTTCCACT
TCATGGAAATGAATACCCGCCTGCAGGTGGAGCATCCTATAACGGAAATG
ATTACGGGCACCGATTTGGTTGAATGGCAGATTCGCATTGCCGCCGGTGA
GCCATTACCCCTGAAGCAATCTGAGATTACGCGGCGTGGCCACGCATTTG
AAGCTCGCATTTATGCAGAAAATCCTCGCGGAGGCTTTCTGCCCGGAGCC
GGACCCCTGCGATATTTGTCTACTCCCCAACCATCAAACAACGTTCGCGT
GGAGACGGGTGTCCGAGAAGGAGATGAGGTGTCTGTGCACTACGACCCCA
TGATTGCCAAGCTAGTCGTTTGGGGCGAAAACCGCACACAAGCGCTTAAC
TCATTGGTTGCCCGCCTGGGTGAATATCATATATCTGGTCTGGACACTAA
CATTAATTTCCTCATCGACCTTGCGTCGCATCCTGAGTTTCAGCTGGCCA
ATGTGCACACTGGCTTTATCGATGAGCAGTTCGATACTCTATTTCCGCCA
ATTATCATCAGTCCGCAGCAAGTCAGCCAAGCTGCTTTGGCGCTAGTCTT
AAACGAGTTGCAGGCAGCCTTTAGGAACGGAAACAAAGATCAGGATCCAT
TTGTTGCCACCCCTAACGCTCGTCTGAATTACTCTTTGGTTCGCAGATAT
GACTTGAAAGCCAATGAGAAGGTCTATTCTGTGGCTGTCAAGTTTGATGG
CGAGGATATGCAAATTCAGGTGGATAATGGCGACTGGCAGGATGCAAAGG
TCGAAAGAGTTCAGGATGGAAGTCGTCTAAAAATTCGTGCCAATATCAAT
AGCAACGTCACCACATATAATGCTAGTATTGATGGCACTAGTGTCTCTTT
GTTTTCGGAAAGTGGCAAGGTCGATTTTGAGGTGGGACAGCCGAAATTCT
TAAGTGCCCAGGGCGATCAATTGGGTGCAGTTGGGTCTCGCATAGTGGCT
CCCATGCCCGGGATTTTAGAGAAGGTGCTGGTAAAGCCCGGTGACAAGGT
CAAGAAGGGCGAAAACTTGGCAGTGCTTATTGCCATGAAAATGGAACACA
TTCTAAAAGCTCCAAAGGACGCCACCATTAAGTCTATTGGAGGAGCCGCG
GGCGATAACGTTGCTAAGGGAGCGGCCGTGATTACATTCGTCGACGAGGA
AGTAGAAAAGGCAAGCTTTCTAGACCAT
BO17379.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RC | 2097 | CG2118-PC | 1..2094 | 17..2110 | 10470 | 100 | Plus |
| CG2118-RA | 2097 | CG2118-PA | 1..2094 | 17..2110 | 10470 | 100 | Plus |
| CG2118-RD | 1905 | CG2118-PD | 1..1902 | 209..2110 | 9510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RC | 2920 | CG2118-RC | 290..2383 | 17..2110 | 10470 | 100 | Plus |
| CG2118-RA | 2387 | CG2118-RA | 111..2204 | 17..2110 | 10470 | 100 | Plus |
| CG2118-RB | 2297 | CG2118-RB | 31..2114 | 27..2110 | 10420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31792705..31793473 | 823..55 | 3845 | 100 | Minus |
| 3R | 32079331 | 3R | 31792144..31792650 | 1330..824 | 2535 | 100 | Minus |
| 3R | 32079331 | 3R | 31791793..31792084 | 1622..1331 | 1460 | 100 | Minus |
| 3R | 32079331 | 3R | 31791550..31791738 | 1810..1622 | 945 | 100 | Minus |
| 3R | 32079331 | 3R | 31791314..31791485 | 1982..1811 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 31791129..31791257 | 2110..1982 | 645 | 100 | Minus |
| 3R | 32079331 | 3R | 31793575..31793618 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:21:12 has no hits.
BO17379.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:29 Download gff for
BO17379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 1..2097 | 17..2114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:01 Download gff for
BO17379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..2207 | 17..2114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:42 Download gff for
BO17379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..2204 | 17..2112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:29 Download gff for
BO17379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..2207 | 17..2114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:24 Download gff for
BO17379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..2204 | 17..2112 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:24 Download gff for
BO17379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31791550..31791737 | 1623..1810 | 100 | <- | Minus |
| 3R | 31791127..31791256 | 1983..2112 | 98 | <- | Minus |
| 3R | 31791314..31791485 | 1811..1982 | 100 | <- | Minus |
| 3R | 31791793..31792084 | 1331..1622 | 100 | <- | Minus |
| 3R | 31792144..31792650 | 824..1330 | 100 | <- | Minus |
| 3R | 31792705..31793470 | 58..823 | 100 | <- | Minus |
| 3R | 31793578..31793618 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:42 Download gff for
BO17379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27617515..27617806 | 1331..1622 | 100 | <- | Minus |
| arm_3R | 27616849..27616978 | 1983..2112 | 98 | <- | Minus |
| arm_3R | 27617036..27617207 | 1811..1982 | 100 | <- | Minus |
| arm_3R | 27617272..27617459 | 1623..1810 | 100 | <- | Minus |
| arm_3R | 27617866..27618372 | 824..1330 | 100 | <- | Minus |
| arm_3R | 27618427..27619192 | 58..823 | 100 | <- | Minus |
| arm_3R | 27619300..27619340 | 17..57 | 100 | | Minus |
BO17379.pep Sequence
Translation from 16 to 2128
> BO17379.pep
MYARLLRNFGANARCFATEASPKVRPISKILISNRGEIACRVIRTARKLG
VRTVAVFSDPDEKSMHTQLADESYRVGEAASSASYLRGERILDIAKRSGA
QAIHPGYGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKSTSKAIMAA
AGVPIINGYHGDDQSDECLQREADKIGFPLMIKAVRGGGGKGMRIAEKPD
DFLTALNSARTESEKSFGDSSVLLERYVRSPRHVEVQVFADQYGDAVYLW
ERDCSVQRRHQKIIEEAPAPGLSEDLRRELGEAAVRAAKAVGYVGAGTVE
FILDKEDLSFHFMEMNTRLQVEHPITEMITGTDLVEWQIRIAAGEPLPLK
QSEITRRGHAFEARIYAENPRGGFLPGAGPLRYLSTPQPSNNVRVETGVR
EGDEVSVHYDPMIAKLVVWGENRTQALNSLVARLGEYHISGLDTNINFLI
DLASHPEFQLANVHTGFIDEQFDTLFPPIIISPQQVSQAALALVLNELQA
AFRNGNKDQDPFVATPNARLNYSLVRRYDLKANEKVYSVAVKFDGEDMQI
QVDNGDWQDAKVERVQDGSRLKIRANINSNVTTYNASIDGTSVSLFSESG
KVDFEVGQPKFLSAQGDQLGAVGSRIVAPMPGILEKVLVKPGDKVKKGEN
LAVLIAMKMEHILKAPKDATIKSIGGAAGDNVAKGAAVITFVDEEVEKAS
FLDH
BO17379.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-PC | 698 | CG2118-PC | 1..698 | 1..698 | 3551 | 100 | Plus |
| CG2118-PA | 698 | CG2118-PA | 1..698 | 1..698 | 3551 | 100 | Plus |
| CG2118-PD | 634 | CG2118-PD | 1..634 | 65..698 | 3231 | 100 | Plus |
| CG2118-PB | 634 | CG2118-PB | 1..634 | 65..698 | 3231 | 100 | Plus |
| CG1516-PB | 1181 | CG1516-PB | 37..485 | 25..470 | 877 | 40.2 | Plus |
