Clone Sequence Records
BO17385.3prime Sequence
696 bp (622 high quality bases) assembled on 2006-10-13
> BO17385.3prime
ATGGTCTAGAAAGCTTGCAGCCTGGGATTTATTGACCGGAACTTTCAGGT
TGTGAAGTGGTTTAAAGTCCGGAATCAACTCGAATCCAGTTTTTTGATCG
TCTGCTAGGGCGGCGTTTCCAGGACGCTTCAGAATTATGGCTTGCAAGCC
CGCACAGCGAGCGGCGGCCGCTTCTCCTGGAATATCCGTGAGAAAGAGTA
TCTGCTTCGGGTCCTCCTTCAATTGCTTGGCAATGTTTTTATAGGACTGC
TGTTCCTGTTTGTGGCCCACATGGGTGTCGAAATAAGCACTCAAGTACGG
CTGCAGGTTCCCGGCCAAACTATGACCGAATATCAGCTTTTGGGCAGCCA
CACTGCCGCTGGAGTAGACTGCAATCTGGAGGCCAGCAGCACGCCAAGCC
TCAAAAGCTGCAGGGACGTCTTCGTATACATGGCCCTTCAGCTCTCCATT
AGCGTAGCCCTGCGCCCAAATCAAGCCCTGCAGCGTTTTCATTGGCGTGA
CCTTCAGATCCTGATCAATTAAATAGCGCACAAAGCCTGCAATCAGATCT
ACATCCACTTCCGTAGGTGGACCACTTAACAGGGCCTTGTAGTCCGCATA
CTGGGGCACTTGCTGTAGATCCTGGACAATACGCTTTATATCATCTTCTT
CCCACGAATCCCTCAAGAACTTTTCCACATTCTGCTTGGCGTANGG
BO17385.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-PA | 771 | CG12173-RA | 94..768 | 693..19 | 3350 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-RA | 867 | CG12173-RA | 172..846 | 693..19 | 3360 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5256248..5256510 | 431..693 | 1300 | 99.6 | Plus |
3R | 32079331 | 3R | 5255682..5255938 | 174..430 | 1285 | 100 | Plus |
3R | 32079331 | 3R | 5255465..5255621 | 19..175 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:55:27 has no hits.
BO17385.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:26 Download gff for
BO17385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-PA | 91..771 | 18..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:04 Download gff for
BO17385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 169..846 | 19..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:09 Download gff for
BO17385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 169..846 | 19..696 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:09 Download gff for
BO17385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5255465..5255619 | 19..173 | 100 | <- | Plus |
3R | 5255682..5255938 | 174..430 | 100 | <- | Plus |
3R | 5256248..5256512 | 431..696 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:04 Download gff for
BO17385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1081187..1081341 | 19..173 | 100 | <- | Plus |
arm_3R | 1081404..1081660 | 174..430 | 100 | <- | Plus |
arm_3R | 1081970..1082234 | 431..696 | 99 | | Plus |
BO17385.5prime Sequence
683 bp (626 high quality bases) assembled on 2006-10-13
> BO17385.5prime
GAAGTTATCAGTCGACATGTCGTCCAGTGAACGAGTGGCCAAAGTGGTGC
TGGTGGACATCGAGGGCACCACCACTTCGATTAGCTTTGTGCACGATGTC
CTGTTTCCCTACGCCAAGCAGAATGTGGAAAAGTTCCTGAGGGATTCGTG
GGAAGAAGATGATATAAAGCGTATTGTCCAGGATCTACAGCAAGTGCCCC
AGTATGCGGACTACAAGGCCCTGTTAAGTGGTCCACCTACGGAAGTGGAT
GTAGATCTGATTGCAGGCTTTGTGCGCTATTTAATTGATCAGGATCTGAA
GGTCACGCCAATGAAAACGCTGCAGGGCTTGATTTGGGCGCAGGGCTACG
CTAATGGAGAGCTGAAGGGCCATGTATACGAAGACGTCCCTGCAGCTTTT
GAGGCTTGGCGTGCTGCTGGCCTCCAGATTGCAGTCTACTCCAGCGGCAG
TGTGGCTGCCCAAAAGCTGATATTCGGTCATAGTTTGGCCGGGAACCTGC
AGCCGTACTTGAGTGCTTATTTCGACACCCATGTGGGCCACAAACAGGAA
CAGCAGTCCTATAAAAACATTGCCAAGCAATTGAAGGAGGACCCGAAGCA
GATACTCTTTCTCACGGATATTCCAGGAGAAGCGGCCGCCGCTCGCTGTG
CGGGCTTGCAAGCCATATTTCTGAAGCGTCCTG
BO17385.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-PA | 771 | CG12173-RA | 1..667 | 17..683 | 3310 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-RA | 867 | CG12173-RA | 79..745 | 17..683 | 3320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5256248..5256603 | 372..17 | 1780 | 100 | Minus |
3R | 32079331 | 3R | 5255682..5255938 | 629..373 | 1285 | 100 | Minus |
3R | 32079331 | 3R | 5255566..5255621 | 683..628 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:06:20 has no hits.
BO17385.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:27 Download gff for
BO17385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-PA | 1..667 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:03 Download gff for
BO17385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 70..745 | 7..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:23 Download gff for
BO17385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 70..745 | 7..683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:23 Download gff for
BO17385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5255566..5255619 | 630..683 | 98 | <- | Minus |
3R | 5255682..5255938 | 373..629 | 100 | <- | Minus |
3R | 5256248..5256612 | 7..372 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:03 Download gff for
BO17385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1081288..1081341 | 630..683 | 98 | <- | Minus |
arm_3R | 1081404..1081660 | 373..629 | 100 | <- | Minus |
arm_3R | 1081970..1082334 | 7..372 | 98 | | Minus |
BO17385.complete Sequence
802 bp assembled on 2006-10-11
GenBank Submission: FJ634103
> BO17385.complete
GAAGTTATCAGTCGACATGTCGTCCAGTGAACGAGTGGCCAAAGTGGTGC
TGGTGGACATCGAGGGCACCACCACTTCGATTAGCTTTGTGCACGATGTC
CTGTTTCCCTACGCCAAGCAGAATGTGGAAAAGTTCCTGAGGGATTCGTG
GGAAGAAGATGATATAAAGCGTATTGTCCAGGATCTACAGCAAGTGCCCC
AGTATGCGGACTACAAGGCCCTGTTAAGTGGTCCACCTACGGAAGTGGAT
GTAGATCTGATTGCAGGCTTTGTGCGCTATTTAATTGATCAGGATCTGAA
GGTCACGCCAATGAAAACGCTGCAGGGCTTGATTTGGGCGCAGGGCTACG
CTAATGGAGAGCTGAAGGGCCATGTATACGAAGACGTCCCTGCAGCTTTT
GAGGCTTGGCGTGCTGCTGGCCTCCAGATTGCAGTCTACTCCAGCGGCAG
TGTGGCTGCCCAAAAGCTGATATTCGGTCATAGTTTGGCCGGGAACCTGC
AGCCGTACTTGAGTGCTTATTTCGACACCCATGTGGGCCACAAACAGGAA
CAGCAGTCCTATAAAAACATTGCCAAGCAATTGAAGGAGGACCCGAAGCA
GATACTCTTTCTCACGGATATTCCAGGAGAAGCGGCCGCCGCTCGCTGTG
CGGGCTTGCAAGCCATAATTCTGAAGCGTCCTGGAAACGCCGCCCTAGCA
GACGATCAAAAAACTGGATTCGAGTTGATTCCGGACTTTAAACCACTTCA
CAACCTGAAAGTTCCGGTCAATAAATCCCAGGCTGCAAGCTTTCTAGACC
AT
BO17385.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-RA | 771 | CG12173-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-RA | 867 | CG12173-RA | 79..846 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5256248..5256603 | 372..17 | 1780 | 100 | Minus |
3R | 32079331 | 3R | 5255682..5255938 | 629..373 | 1285 | 100 | Minus |
3R | 32079331 | 3R | 5255465..5255621 | 784..628 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:42:42 has no hits.
BO17385.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:06 Download gff for
BO17385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 1..771 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:07 Download gff for
BO17385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 40..819 | 7..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:02 Download gff for
BO17385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 79..846 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:06 Download gff for
BO17385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 40..819 | 7..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:10 Download gff for
BO17385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12173-RA | 79..846 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:10 Download gff for
BO17385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5255463..5255619 | 630..786 | 98 | <- | Minus |
3R | 5255682..5255938 | 373..629 | 100 | <- | Minus |
3R | 5256248..5256603 | 17..372 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:02 Download gff for
BO17385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1081185..1081341 | 630..786 | 98 | <- | Minus |
arm_3R | 1081404..1081660 | 373..629 | 100 | <- | Minus |
arm_3R | 1081970..1082325 | 17..372 | 100 | | Minus |
BO17385.pep Sequence
Translation from 16 to 802
> BO17385.pep
MSSSERVAKVVLVDIEGTTTSISFVHDVLFPYAKQNVEKFLRDSWEEDDI
KRIVQDLQQVPQYADYKALLSGPPTEVDVDLIAGFVRYLIDQDLKVTPMK
TLQGLIWAQGYANGELKGHVYEDVPAAFEAWRAAGLQIAVYSSGSVAAQK
LIFGHSLAGNLQPYLSAYFDTHVGHKQEQQSYKNIAKQLKEDPKQILFLT
DIPGEAAAARCAGLQAIILKRPGNAALADDQKTGFELIPDFKPLHNLKVP
VNKSQAASFLDH
BO17385.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12173-PA | 256 | CG12173-PA | 1..256 | 1..256 | 1314 | 100 | Plus |