Clone BO17385 Report

Search the DGRC for BO17385

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:173
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG12173-RA
Protein status:BO17385.pep: validated full length
Sequenced Size:802

Clone Sequence Records

BO17385.3prime Sequence

696 bp (622 high quality bases) assembled on 2006-10-13

> BO17385.3prime
ATGGTCTAGAAAGCTTGCAGCCTGGGATTTATTGACCGGAACTTTCAGGT
TGTGAAGTGGTTTAAAGTCCGGAATCAACTCGAATCCAGTTTTTTGATCG
TCTGCTAGGGCGGCGTTTCCAGGACGCTTCAGAATTATGGCTTGCAAGCC
CGCACAGCGAGCGGCGGCCGCTTCTCCTGGAATATCCGTGAGAAAGAGTA
TCTGCTTCGGGTCCTCCTTCAATTGCTTGGCAATGTTTTTATAGGACTGC
TGTTCCTGTTTGTGGCCCACATGGGTGTCGAAATAAGCACTCAAGTACGG
CTGCAGGTTCCCGGCCAAACTATGACCGAATATCAGCTTTTGGGCAGCCA
CACTGCCGCTGGAGTAGACTGCAATCTGGAGGCCAGCAGCACGCCAAGCC
TCAAAAGCTGCAGGGACGTCTTCGTATACATGGCCCTTCAGCTCTCCATT
AGCGTAGCCCTGCGCCCAAATCAAGCCCTGCAGCGTTTTCATTGGCGTGA
CCTTCAGATCCTGATCAATTAAATAGCGCACAAAGCCTGCAATCAGATCT
ACATCCACTTCCGTAGGTGGACCACTTAACAGGGCCTTGTAGTCCGCATA
CTGGGGCACTTGCTGTAGATCCTGGACAATACGCTTTATATCATCTTCTT
CCCACGAATCCCTCAAGAACTTTTCCACATTCTGCTTGGCGTANGG

BO17385.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-PA 771 CG12173-RA 94..768 693..19 3350 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-RA 867 CG12173-RA 172..846 693..19 3360 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5256248..5256510 431..693 1300 99.6 Plus
3R 32079331 3R 5255682..5255938 174..430 1285 100 Plus
3R 32079331 3R 5255465..5255621 19..175 785 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:55:27 has no hits.

BO17385.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:26 Download gff for BO17385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12173-PA 91..771 18..696 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:04 Download gff for BO17385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 169..846 19..696 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:09 Download gff for BO17385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 169..846 19..696 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:09 Download gff for BO17385.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5255465..5255619 19..173 100 <- Plus
3R 5255682..5255938 174..430 100 <- Plus
3R 5256248..5256512 431..696 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:04 Download gff for BO17385.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1081187..1081341 19..173 100 <- Plus
arm_3R 1081404..1081660 174..430 100 <- Plus
arm_3R 1081970..1082234 431..696 99   Plus

BO17385.5prime Sequence

683 bp (626 high quality bases) assembled on 2006-10-13

> BO17385.5prime
GAAGTTATCAGTCGACATGTCGTCCAGTGAACGAGTGGCCAAAGTGGTGC
TGGTGGACATCGAGGGCACCACCACTTCGATTAGCTTTGTGCACGATGTC
CTGTTTCCCTACGCCAAGCAGAATGTGGAAAAGTTCCTGAGGGATTCGTG
GGAAGAAGATGATATAAAGCGTATTGTCCAGGATCTACAGCAAGTGCCCC
AGTATGCGGACTACAAGGCCCTGTTAAGTGGTCCACCTACGGAAGTGGAT
GTAGATCTGATTGCAGGCTTTGTGCGCTATTTAATTGATCAGGATCTGAA
GGTCACGCCAATGAAAACGCTGCAGGGCTTGATTTGGGCGCAGGGCTACG
CTAATGGAGAGCTGAAGGGCCATGTATACGAAGACGTCCCTGCAGCTTTT
GAGGCTTGGCGTGCTGCTGGCCTCCAGATTGCAGTCTACTCCAGCGGCAG
TGTGGCTGCCCAAAAGCTGATATTCGGTCATAGTTTGGCCGGGAACCTGC
AGCCGTACTTGAGTGCTTATTTCGACACCCATGTGGGCCACAAACAGGAA
CAGCAGTCCTATAAAAACATTGCCAAGCAATTGAAGGAGGACCCGAAGCA
GATACTCTTTCTCACGGATATTCCAGGAGAAGCGGCCGCCGCTCGCTGTG
CGGGCTTGCAAGCCATATTTCTGAAGCGTCCTG

BO17385.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-PA 771 CG12173-RA 1..667 17..683 3310 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-RA 867 CG12173-RA 79..745 17..683 3320 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5256248..5256603 372..17 1780 100 Minus
3R 32079331 3R 5255682..5255938 629..373 1285 100 Minus
3R 32079331 3R 5255566..5255621 683..628 265 98.2 Minus
Blast to na_te.dros performed on 2015-01-30 18:06:20 has no hits.

BO17385.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:27 Download gff for BO17385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12173-PA 1..667 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:03 Download gff for BO17385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 70..745 7..683 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:23 Download gff for BO17385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 70..745 7..683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:23 Download gff for BO17385.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5255566..5255619 630..683 98 <- Minus
3R 5255682..5255938 373..629 100 <- Minus
3R 5256248..5256612 7..372 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:03 Download gff for BO17385.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1081288..1081341 630..683 98 <- Minus
arm_3R 1081404..1081660 373..629 100 <- Minus
arm_3R 1081970..1082334 7..372 98   Minus

BO17385.complete Sequence

802 bp assembled on 2006-10-11

GenBank Submission: FJ634103

> BO17385.complete
GAAGTTATCAGTCGACATGTCGTCCAGTGAACGAGTGGCCAAAGTGGTGC
TGGTGGACATCGAGGGCACCACCACTTCGATTAGCTTTGTGCACGATGTC
CTGTTTCCCTACGCCAAGCAGAATGTGGAAAAGTTCCTGAGGGATTCGTG
GGAAGAAGATGATATAAAGCGTATTGTCCAGGATCTACAGCAAGTGCCCC
AGTATGCGGACTACAAGGCCCTGTTAAGTGGTCCACCTACGGAAGTGGAT
GTAGATCTGATTGCAGGCTTTGTGCGCTATTTAATTGATCAGGATCTGAA
GGTCACGCCAATGAAAACGCTGCAGGGCTTGATTTGGGCGCAGGGCTACG
CTAATGGAGAGCTGAAGGGCCATGTATACGAAGACGTCCCTGCAGCTTTT
GAGGCTTGGCGTGCTGCTGGCCTCCAGATTGCAGTCTACTCCAGCGGCAG
TGTGGCTGCCCAAAAGCTGATATTCGGTCATAGTTTGGCCGGGAACCTGC
AGCCGTACTTGAGTGCTTATTTCGACACCCATGTGGGCCACAAACAGGAA
CAGCAGTCCTATAAAAACATTGCCAAGCAATTGAAGGAGGACCCGAAGCA
GATACTCTTTCTCACGGATATTCCAGGAGAAGCGGCCGCCGCTCGCTGTG
CGGGCTTGCAAGCCATAATTCTGAAGCGTCCTGGAAACGCCGCCCTAGCA
GACGATCAAAAAACTGGATTCGAGTTGATTCCGGACTTTAAACCACTTCA
CAACCTGAAAGTTCCGGTCAATAAATCCCAGGCTGCAAGCTTTCTAGACC
AT

BO17385.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-RA 771 CG12173-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-RA 867 CG12173-RA 79..846 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5256248..5256603 372..17 1780 100 Minus
3R 32079331 3R 5255682..5255938 629..373 1285 100 Minus
3R 32079331 3R 5255465..5255621 784..628 785 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:42:42 has no hits.

BO17385.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:06 Download gff for BO17385.complete
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 1..771 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:07 Download gff for BO17385.complete
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 40..819 7..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:02 Download gff for BO17385.complete
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 79..846 17..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:06 Download gff for BO17385.complete
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 40..819 7..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:10 Download gff for BO17385.complete
Subject Subject Range Query Range Percent Splice Strand
CG12173-RA 79..846 17..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:10 Download gff for BO17385.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5255463..5255619 630..786 98 <- Minus
3R 5255682..5255938 373..629 100 <- Minus
3R 5256248..5256603 17..372 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:02 Download gff for BO17385.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1081185..1081341 630..786 98 <- Minus
arm_3R 1081404..1081660 373..629 100 <- Minus
arm_3R 1081970..1082325 17..372 100   Minus

BO17385.pep Sequence

Translation from 16 to 802

> BO17385.pep
MSSSERVAKVVLVDIEGTTTSISFVHDVLFPYAKQNVEKFLRDSWEEDDI
KRIVQDLQQVPQYADYKALLSGPPTEVDVDLIAGFVRYLIDQDLKVTPMK
TLQGLIWAQGYANGELKGHVYEDVPAAFEAWRAAGLQIAVYSSGSVAAQK
LIFGHSLAGNLQPYLSAYFDTHVGHKQEQQSYKNIAKQLKEDPKQILFLT
DIPGEAAAARCAGLQAIILKRPGNAALADDQKTGFELIPDFKPLHNLKVP
VNKSQAASFLDH

BO17385.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12173-PA 256 CG12173-PA 1..256 1..256 1314 100 Plus