Clone Sequence Records
BO17388.3prime Sequence
632 bp (632 high quality bases) assembled on 2006-10-13
> BO17388.3prime
ATGGTCTAGAAAGCTTGCTTTCCAGGGCAGGGCCAGCTTTCCGGTTTCAT
GAACGCGGACCAATCTCTCTCCGGGCGTGTAGTACTTGGCTGGCGGCGGT
GGTGGAGCCTTGATGGTGAGGATGCCATCGCTGGATATGTCCGAGATTAC
CTCATTGGCATTGTATCCGCGGGGCAGAAGGTACTTCCTCACAAAGTGCC
GCTCCACCAGGCCATTGGAACCCTCGTCGCGACGATTGTGATTTCCCTGG
ACGATGACATAGTCGTCATTGGTTTTGACCACAATGTCGTGGGGATGAAA
TTGTCGCACATCGATGTCAATCCGAAATCCCTTCTCATCCACATGGACAC
GCTCACCGGAATAGTAGTTGTCCCACCTCATTGGATGCGCCCACTCATAC
GGCGTCGATTGGATCAACTGGTTGCGCACTCGACGCGACACCAGCTCATC
CAGAGGTCGGAGTAGGTCACTTCTGCTGGTGTGAGGCGATGGCCACCAGA
GACGCGAATCGTCCCACAGATACGGATATAGCTGGAAATCATACGGCGGA
TGGTAGAGCGGACGGAGTCGATCAAATTCGCGCGACAAATCGCGATATGT
GGTAGGCACCAGAGACATGTCGACTGATAACT
BO17388.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-PA | 603 | CG4461-RA | 1..600 | 618..19 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-RA | 864 | CG4461-RA | 55..654 | 618..19 | 3000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9375484..9376083 | 618..19 | 3000 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:03:18 has no hits.
BO17388.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:28 Download gff for
BO17388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-PA | 1..603 | 18..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:16 Download gff for
BO17388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 52..654 | 19..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:20 Download gff for
BO17388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 52..654 | 19..621 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:20 Download gff for
BO17388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9375481..9376083 | 19..621 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:16 Download gff for
BO17388.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9368581..9369183 | 19..621 | 99 | | Minus |
BO17388.5prime Sequence
632 bp (632 high quality bases) assembled on 2006-10-13
> BO17388.5prime
GAAGTTATCAGTCGACATGTCTCTGGTGCCTACCACATATCGCGATTTGT
CGCGCGAATTTGATCGACTCCGTCCGCTCTACCATCCGCCGTATGATTTC
CAGCTATATCCGTATCTGTGGGACGATTCGCGTCTCTGGTGGCCATCGCC
TCACACCAGCAGAAGTGACCTACTCCGACCTCTGGATGAGCTGGTGTCGC
GTCGAGTGCGCAACCAGTTGATCCAATCGACGCCGTATGAGTGGGCGCAT
CCAATGAGGTGGGACAACTACTATTCCGGTGAGCGTGTCCATGTGGATGA
GAAGGGATTTCGGATTGACATCGATGTGCGACAATTTCATCCCCACGACA
TTGTGGTCAAAACCAATGACGACTATGTCATCGTCCAGGGAAATCACAAT
CGTCGCGACGAGGGTTCCAATGGCCTGGTGGAGCGGCACTTTGTGAGGAA
GTACCTTCTGCCCCGCGGATACAATGCCAATGAGGTAATCTCGGACATAT
CCAGCGATGGCATCCTCACCATCAAGGCTCCACCACCGCCGCCAGCCAAG
TACTACACGCCCGGAGAGAGATTGGTCCGCGTTCATGAAACCGGAAAGCT
GGCCCTGCCCTGGAAAGCAAGCTTTCTAGACC
BO17388.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-PA | 603 | CG4461-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-RA | 864 | CG4461-RA | 55..654 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9375484..9376083 | 17..616 | 3000 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:24:55 has no hits.
BO17388.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:29 Download gff for
BO17388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-PA | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:08 Download gff for
BO17388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 52..654 | 14..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:09 Download gff for
BO17388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 52..654 | 14..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:09 Download gff for
BO17388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9375481..9376083 | 14..616 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:08 Download gff for
BO17388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9368581..9369183 | 14..616 | 99 | | Plus |
BO17388.complete Sequence
634 bp assembled on 2006-10-11
GenBank Submission: FJ634104
> BO17388.complete
GAAGTTATCAGTCGACATGTCTCTGGTGCCTACCACATATCGCGATTTGT
CGCGCGAATTTGATCGACTCCGTCCGCTCTACCATCCGCCGTATGATTTC
CAGCTATATCCGTATCTGTGGGACGATTCGCGTCTCTGGTGGCCATCGCC
TCACACCAGCAGAAGTGACCTACTCCGACCTCTGGATGAGCTGGTGTCGC
GTCGAGTGCGCAACCAGTTGATCCAATCGACGCCGTATGAGTGGGCGCAT
CCAATGAGGTGGGACAACTACTATTCCGGTGAGCGTGTCCATGTGGATGA
GAAGGGATTTCGGATTGACATCGATGTGCGACAATTTCATCCCCACGACA
TTGTGGTCAAAACCAATGACGACTATGTCATCGTCCAGGGAAATCACAAT
CGTCGCGACGAGGGTTCCAATGGCCTGGTGGAGCGGCACTTTGTGAGGAA
GTACCTTCTGCCCCGCGGATACAATGCCAATGAGGTAATCTCGGACATAT
CCAGCGATGGCATCCTCACCATCAAGGCTCCACCACCGCCGCCAGCCAAG
TACTACACGCCCGGAGAGAGATTGGTCCGCGTTCATGAAACCGGAAAGCT
GGCCCTGCCCTGGAAAGCAAGCTTTCTAGACCAT
BO17388.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-RA | 603 | CG4461-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-RA | 864 | CG4461-RA | 55..654 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9375484..9376083 | 17..616 | 3000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:14:08 has no hits.
BO17388.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:07 Download gff for
BO17388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:08 Download gff for
BO17388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 53..655 | 14..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:03 Download gff for
BO17388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 55..654 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:08 Download gff for
BO17388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 53..655 | 14..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:50 Download gff for
BO17388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4461-RA | 55..654 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:50 Download gff for
BO17388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9375484..9376083 | 17..618 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:03 Download gff for
BO17388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9368584..9369183 | 17..618 | 99 | | Plus |
BO17388.pep Sequence
Translation from 16 to 634
> BO17388.pep
MSLVPTTYRDLSREFDRLRPLYHPPYDFQLYPYLWDDSRLWWPSPHTSRS
DLLRPLDELVSRRVRNQLIQSTPYEWAHPMRWDNYYSGERVHVDEKGFRI
DIDVRQFHPHDIVVKTNDDYVIVQGNHNRRDEGSNGLVERHFVRKYLLPR
GYNANEVISDISSDGILTIKAPPPPPAKYYTPGERLVRVHETGKLALPWK
ASFLDH
BO17388.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4461-PA | 200 | CG4461-PA | 1..200 | 1..200 | 1105 | 100 | Plus |
| Hsp27-PB | 213 | CG4466-PB | 85..191 | 93..201 | 287 | 48.6 | Plus |
| Hsp27-PA | 213 | CG4466-PA | 85..191 | 93..201 | 287 | 48.6 | Plus |
| Hsp67Ba-PA | 445 | CG4167-PA | 122..204 | 93..176 | 250 | 50 | Plus |
| Hsp23-PB | 186 | CG4463-PB | 60..164 | 87..193 | 241 | 44.9 | Plus |
