Clone Sequence Records
BO17402.3prime Sequence
584 bp (584 high quality bases) assembled on 2006-10-13
> BO17402.3prime
ATGGTCTAGAAAGCTTGCTCCCCCAGTAGTTCCCGCCAGATAAATGGCCA
TAGCTTCACGATTTAGATGCACAAACTGGCGCCTTTTCGGAATTGGTTGG
ACATTCGGTAGCCGCGTTCCATTCACGGCATTCAAACTCAGATTCGAGCT
GGGATCGTAGTCATCGGAGAAAAGTGTATCGTCGGAAGAATTGGACTCAA
CCAACTGGCTTCCTGCTCTTTGAGCCGCCGCCGCCGGCGCTGCGCTAGTG
GTTGATTCTTGCTCCTCCGAGGATTGTGTTGTGGACACACTAGCCGCGGA
CTCATGAGATTTCTCACTACTGCTCCTCGAGAGAATAGCACTGGCTGCCT
GTCTATTTGCCAGGTGTCTCTTCGCATTGTTGTTCTTCAGCCGGTAGAGC
TGGATCAGTTGCGTGTAGCACGAGAGGCACAGTGGCTGAGACCGCAGCTC
CGAGTTTATCAGCTGGCCAAACTTCAGCAGGTGCGGATTTCTGATTACGC
GGTACGGGGACCTCAGCGTGTGATTCCCCAGACCGCACAAGCGGTGCTCC
TCATGGGGCGAATCCGACATGTCGACTGATAACT
BO17402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14251-PA | 555 | ms(3)K81-RA | 1..552 | 570..19 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(3)K81-RA | 711 | CG14251-RA | 105..656 | 570..19 | 2760 | 100 | Minus |
| HipHop-RB | 1183 | CG6874-RB | 655..743 | 166..78 | 205 | 82 | Minus |
| HipHop-RA | 1124 | CG6874-RA | 596..684 | 166..78 | 205 | 82 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26875956..26876507 | 570..19 | 2760 | 100 | Minus |
| 3L | 28110227 | 3L | 18821825..18821913 | 166..78 | 205 | 82 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:37:21 has no hits.
BO17402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:30 Download gff for
BO17402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14251-PA | 1..555 | 15..570 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:01:50 Download gff for
BO17402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)K81-RA | 95..664 | 10..582 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:56:43 Download gff for
BO17402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)K81-RA | 95..664 | 10..582 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:56:43 Download gff for
BO17402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26875946..26876515 | 10..582 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:01:50 Download gff for
BO17402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22701668..22702237 | 10..582 | 98 | | Minus |
BO17402.5prime Sequence
584 bp (584 high quality bases) assembled on 2006-10-13
> BO17402.5prime
GAAGTTATCAGTCGACATGTCGGATTCGCCCCATGAGGAGCACCGCTTGT
GCGGTCTGGGGAATCACACGCTGAGGTCCCCGTACCGCGTAATCAGAAAT
CCGCACCTGCTGAAGTTTGGCCAGCTGATAAACTCGGAGCTGCGGTCTCA
GCCACTGTGCCTCTCGTGCTACACGCAACTGATCCAGCTCTACCGGCTGA
AGAACAACAATGCGAAGAGACACCTGGCAAATAGACAGGCAGCCAGTGCT
ATTCTCTCGAGGAGCAGTAGTGAGAAATCTCATGAGTCCGCGGCTAGTGT
GTCCACAACACAATCCTCGGAGGAGCAAGAATCAACCACTAGCGCAGCGC
CGGCGGCGGCGGCTCAAAGAGCAGGAAGCCAGTTGGTTGAGTCCAATTCT
TCCGACGATACACTTTTCTCCGATGACTACGATCCCAGCTCGAATCTGAG
TTTGAATGCCGTGAATGGAACGCGGCTACCGAATGTCCAACCAATTCCGA
AAAGGCGCCAGTTTGTGCATCTAAATCGTGAAGCTATGGCCATTTATCTG
GCGGGAACTACTGGGGGAGCAAGCTTTCTAGACC
BO17402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14251-PA | 555 | ms(3)K81-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(3)K81-RA | 711 | CG14251-RA | 105..656 | 17..568 | 2760 | 100 | Plus |
| HipHop-RB | 1183 | CG6874-RB | 655..743 | 421..509 | 205 | 82 | Plus |
| HipHop-RA | 1124 | CG6874-RA | 596..684 | 421..509 | 205 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26875956..26876507 | 17..568 | 2760 | 100 | Plus |
| 3L | 28110227 | 3L | 18821825..18821913 | 421..509 | 205 | 82 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:57:41 has no hits.
BO17402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:31 Download gff for
BO17402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14251-PA | 1..555 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:05:35 Download gff for
BO17402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)K81-RA | 95..664 | 5..577 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:01 Download gff for
BO17402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)K81-RA | 95..664 | 5..577 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:01 Download gff for
BO17402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26875946..26876515 | 5..577 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:05:35 Download gff for
BO17402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22701668..22702237 | 5..577 | 98 | | Plus |
BO17402.complete Sequence
586 bp assembled on 2007-10-17
GenBank Submission: FJ634105
> BO17402.complete
GAAGTTATCAGTCGACATGTCGGATTCGCCCCATGAGGAGCACCGCTTGT
GCGGTCTGGGGAATCACACGCTGAGGTCCCCGTACCGCGTAATCAGAAAT
CCGCACCTGCTGAAGTTTGGCCAGCTGATAAACTCGGAGCTGCGGTCTCA
GCCACTGTGCCTCTCGTGCTACACGCAACTGATCCAGCTCTACCGGCTGA
AGAACAACAATGCGAAGAGACACCTGGCAAATAGACAGGCAGCCAGTGCT
ATTCTCTCGAGGAGCAGTAGTGAGAAATCTCATGAGTCCGCGGCTAGTGT
GTCCACAACACAATCCTCGGAGGAGCAAGAATCAACCACTAGCGCAGCGC
CGGCGGCGGCGGCTCAAAGAGCAGGAAGCCAGTTGGTTGAGTCCAATTCT
TCCGACGATACACTTTTCTCCGATGACTACGATCCCAGCTCGAATCTGAG
TTTGAATGCCGTGAATGGAACGCGGCTACCGAATGTCCAACCAATTCCGA
AAAGGCGCCAGTTTGTGCATCTAAATCGTGAAGCTATGGCCATTTATCTG
GCGGGAACTACTGGGGGAGCAAGCTTTCTAGACCAT
BO17402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(3)K81-RA | 555 | CG14251-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
| HipHop-RB | 666 | CG6874-PB | 519..607 | 421..509 | 205 | 82 | Plus |
| HipHop-RA | 666 | CG6874-PA | 519..607 | 421..509 | 205 | 82 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(3)K81-RA | 711 | CG14251-RA | 105..656 | 17..568 | 2760 | 100 | Plus |
| HipHop-RB | 1183 | CG6874-RB | 655..743 | 421..509 | 205 | 82 | Plus |
| HipHop-RA | 1124 | CG6874-RA | 596..684 | 421..509 | 205 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26875956..26876507 | 17..568 | 2760 | 100 | Plus |
| 3L | 28110227 | 3L | 18821825..18821913 | 421..509 | 205 | 82 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:45:47 has no hits.
BO17402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:29 Download gff for
BO17402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)K81-RA | 1..555 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:29 Download gff for
BO17402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)K81-RA | 1..555 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:15 Download gff for
BO17402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)K81-RA | 105..656 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:25 Download gff for
BO17402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)K81-RA | 1..552 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:57 Download gff for
BO17402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ms(3)K81-RA | 105..656 | 17..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:57 Download gff for
BO17402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26875956..26876507 | 17..570 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:15 Download gff for
BO17402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22701678..22702229 | 17..570 | 99 | | Plus |
BO17402.pep Sequence
Translation from 16 to 586
> BO17402.pep
MSDSPHEEHRLCGLGNHTLRSPYRVIRNPHLLKFGQLINSELRSQPLCLS
CYTQLIQLYRLKNNNAKRHLANRQAASAILSRSSSEKSHESAASVSTTQS
SEEQESTTSAAPAAAAQRAGSQLVESNSSDDTLFSDDYDPSSNLSLNAVN
GTRLPNVQPIPKRRQFVHLNREAMAIYLAGTTGGASFLDH
BO17402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ms(3)K81-PA | 184 | CG14251-PA | 1..184 | 1..184 | 933 | 100 | Plus |
| HipHop-PB | 221 | CG6874-PB | 11..221 | 8..184 | 396 | 45.8 | Plus |
| HipHop-PA | 221 | CG6874-PA | 11..221 | 8..184 | 396 | 45.8 | Plus |
