Clone Sequence Records
BO17403.3prime Sequence
632 bp (632 high quality bases) assembled on 2006-10-13
> BO17403.3prime
ATGGTCTAGAAAGCTTGCCTTATTCAAGTTCAGACCGCTGAAACTAATGT
CATTGGCCGAATCCTCCGCGATGGTGAAGTTGAACTTGAACGGACTTCCG
GCTTCAGCTGGTTGAAGGCTGCTGGGATCGAAGTCCTGGACTGGTTGAGG
CTCTTTTGAGCTGGTGTCTTCGGCGGGCGAGGGAAAGTTGAAGCGGAAGT
CCTTTCCAGATGACAGAAGCGCCGACTTCTTTACAAAGCTAGACTTTTTG
GATGATTCAGCCGTAGGTGTGAATTTGATTTGCCTGGAGGCTAGTAGCAA
CTTCTGCTCCTCCTGCTGCATCTTCGCTCGGTAGTCGCCCAGGGCTAGCT
TCATCACCTGCCGCTTCCTGATGAGCGGCGCTGTTGAACTGGTTAGTACC
TTTATGTTCTTGGCAGTATCTTCGGCCACTTTTTGCGCCAGTTTTCCGCT
GTCGAGAGCAGTTTGCAACTGCTGCACACACCAGCAGAGCTCCACTTCGA
ACTGGGTGACAAGGTCGGCGTCGATGGACGGAGGTTCTGCCACCGGCGTG
GGCTTCTTGATTGCTCCCTGGATTGGCGGTGGCTTATTAATCGATTTGGC
GGTTCTTCGTTTGTGCATGTCGACTGATAACT
BO17403.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14286-PA | 603 | CG14286-RA | 1..600 | 618..19 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14286-RA | 762 | CG14286-RA | 55..655 | 619..19 | 3005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19024146..19024746 | 619..19 | 3005 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:06:32 has no hits.
BO17403.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:32 Download gff for
BO17403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14286-PA | 1..603 | 15..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:06 Download gff for
BO17403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14286-RA | 55..658 | 15..619 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:25 Download gff for
BO17403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14286-RA | 55..658 | 15..619 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:25 Download gff for
BO17403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19024146..19024749 | 15..619 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:06 Download gff for
BO17403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14849868..14850471 | 15..619 | 99 | | Minus |
BO17403.5prime Sequence
632 bp (632 high quality bases) assembled on 2006-10-13
> BO17403.5prime
GAAGTTATCAGTCGACATGCACAAACGAAGAACCGCCAAATCGATTAATA
AGCCACCGCCAATCCAGGGAGCAATCAAGAAGCCCACGCCGGTGGCAGAA
CCTCCGTCCATCGACGCCGACCTTGTCACCCAGTTCGAAGTGGAGCTCTG
CTGGTGTGTGCAGCAGTTGCAAACTGCTCTCGACAGCGGAAAACTGGCGC
AAAAAGTGGCCGAAGATACTGCCAAGAACATAAAGGTACTAACCAGTTCA
ACAGCGCCGCTCATCAGGAAGCGGCAGGTGATGAAGCTAGCCCTGGGCGA
CTACCGAGCGAAGATGCAGCAGGAGGAGCAGAAGTTGCTACTAGCCTCCA
GGCAAATCAAATTCACACCTACGGCTGAATCATCCAAAAAGTCTAGCTTT
GTAAAGAAGTCGGCGCTTCTGTCATCTGGAAAGGACTTCCGCTTCAACTT
TCCCTCGCCCGCCGAAGACACCAGCTCAAAAGAGCCTCAACCAGTCCAGG
ACTTCGATCCCAGCAGCCTTCAACCAGCTGAAGCCGGAAGTCCGTTCAAG
TTCAACTTCACCATCGCGGAGGATTCGGCCAATGACATTAGTTTCAGCGG
TCTGAACTTGAATAAGGCAAGCTTTCTAGACC
BO17403.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14286-PA | 603 | CG14286-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14286-RA | 762 | CG14286-RA | 55..655 | 16..616 | 3005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19024146..19024746 | 16..616 | 3005 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:06:43 has no hits.
BO17403.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:32 Download gff for
BO17403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14286-PA | 1..603 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:08 Download gff for
BO17403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14286-RA | 55..658 | 16..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:27 Download gff for
BO17403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14286-RA | 55..658 | 16..620 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:27 Download gff for
BO17403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19024146..19024749 | 16..620 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:08 Download gff for
BO17403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14849868..14850471 | 16..620 | 99 | | Plus |
BO17403.complete Sequence
634 bp assembled on 2006-10-11
GenBank Submission: FJ634106
> BO17403.complete
GAAGTTATCAGTCGACATGCACAAACGAAGAACCGCCAAATCGATTAATA
AGCCACCGCCAATCCAGGGAGCAATCAAGAAGCCCACGCCGGTGGCAGAA
CCTCCGTCCATCGACGCCGACCTTGTCACCCAGTTCGAAGTGGAGCTCTG
CTGGTGTGTGCAGCAGTTGCAAACTGCTCTCGACAGCGGAAAACTGGCGC
AAAAAGTGGCCGAAGATACTGCCAAGAACATAAAGGTACTAACCAGTTCA
ACAGCGCCGCTCATCAGGAAGCGGCAGGTGATGAAGCTAGCCCTGGGCGA
CTACCGAGCGAAGATGCAGCAGGAGGAGCAGAAGTTGCTACTAGCCTCCA
GGCAAATCAAATTCACACCTACGGCTGAATCATCCAAAAAGTCTAGCTTT
GTAAAGAAGTCGGCGCTTCTGTCATCTGGAAAGGACTTCCGCTTCAACTT
TCCCTCGCCCGCCGAAGACACCAGCTCAAAAGAGCCTCAACCAGTCCAGG
ACTTCGATCCCAGCAGCCTTCAACCAGCTGAAGCCGGAAGTCCGTTCAAG
TTCAACTTCACCATCGCGGAGGATTCGGCCAATGACATTAGTTTCAGCGG
TCTGAACTTGAATAAGGCAAGCTTTCTAGACCAT
BO17403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14286-RA | 603 | CG14286-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14286-RA | 762 | CG14286-RA | 55..655 | 16..616 | 3005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19024146..19024746 | 16..616 | 3005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:01:38 has no hits.
BO17403.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:08 Download gff for
BO17403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14286-RA | 1..603 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:10 Download gff for
BO17403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14286-RA | 55..658 | 16..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:55 Download gff for
BO17403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14286-RA | 56..655 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:09 Download gff for
BO17403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14286-RA | 55..658 | 16..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:01 Download gff for
BO17403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14286-RA | 56..655 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:01 Download gff for
BO17403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19024147..19024746 | 17..618 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:55 Download gff for
BO17403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14849869..14850468 | 17..618 | 99 | | Plus |
BO17403.pep Sequence
Translation from 16 to 634
> BO17403.pep
MHKRRTAKSINKPPPIQGAIKKPTPVAEPPSIDADLVTQFEVELCWCVQQ
LQTALDSGKLAQKVAEDTAKNIKVLTSSTAPLIRKRQVMKLALGDYRAKM
QQEEQKLLLASRQIKFTPTAESSKKSSFVKKSALLSSGKDFRFNFPSPAE
DTSSKEPQPVQDFDPSSLQPAEAGSPFKFNFTIAEDSANDISFSGLNLNK
ASFLDH
BO17403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14286-PA | 200 | CG14286-PA | 1..200 | 1..200 | 1010 | 100 | Plus |
