Clone Sequence Records
BO17404.5prime Sequence
545 bp (545 high quality bases) assembled on 2006-10-13
> BO17404.5prime
GAAGTTATCAGTCGACATGGCATTTCGGTTCTTTGGCAAGTCCTTGCTGT
ACGCTCTGCCACTTGGCGTCACTTTCCTGGACTGCGTTGGTTATGTGGCC
AGGGTGGATGGCATCTCCATGCAGCCCGCTCTCAATCCCGTGCCGGATGA
AAAGGACTATGTGTTCCTGCTGCGCTGGGGCACCCACAACAGTCAGGTGG
AGCGCGGCGACATAATATCGCTCATTTCACCCAAGGATCCCGCCCAGAAG
ATTATCAAGCGCGTGGTGGGGCTGCAGGGCGACGTCGTGTCCACGCTGGG
CTACAAGCACGAGATCGTTCGCGTACCCGAAGGACATTGTTGGGTGGAGG
GCGATCACACAGGCCACTCCATGGACAGCAATACCTTTGGACCCGTCGCC
CTGGGCCTGATGTCCGCGCGGGCAGTGGCCATCGTGTGGCCACCGGAACG
CTGGCGAATACTGGAGAACGAACTGCCGCGGCGACGGAGACCCATACAGG
CCTCCAAGAACTCCAGCAACTACTACAACGCAAGCTTTCTAGACC
BO17404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-PA | 516 | CG11110-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-RA | 752 | CG11110-RA | 95..608 | 16..529 | 2570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20641995..20642414 | 110..529 | 2100 | 100 | Plus |
2R | 25286936 | 2R | 20641836..20641931 | 16..111 | 480 | 100 | Plus |
Blast to na_te.dros performed 2015-02-08 12:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 1860..1910 | 495..543 | 105 | 72.5 | Plus |
BO17404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:34 Download gff for
BO17404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-PA | 1..516 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:27 Download gff for
BO17404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 87..608 | 3..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:05 Download gff for
BO17404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 87..608 | 3..529 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:05 Download gff for
BO17404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20641828..20641930 | 3..110 | 95 | -> | Plus |
2R | 20641996..20642414 | 111..529 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:27 Download gff for
BO17404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16529333..16529435 | 3..110 | 95 | -> | Plus |
arm_2R | 16529501..16529919 | 111..529 | 100 | | Plus |
BO17404.3prime Sequence
545 bp (545 high quality bases) assembled on 2006-10-13
> BO17404.3prime
ATGGTCTAGAAAGCTTGCGTTGTAGTAGTTGCTGGAGTTCTTGGAGGCCT
GTATGGGTCTCCGTCGCCGCGGCAGTTCGTTCTCCAGTATTCGCCAGCGT
TCCGGTGGCCACACGATGGCCACTGCCCGCGCGGACATCAGGCCCAGGGC
GACGGGTCCAAAGGTATTGCTGTCCATGGAGTGGCCTGTGTGATCGCCCT
CCACCCAACAATGTCCTTCGGGTACGCGAACGATCTCGTGCTTGTAGCCC
AGCGTGGACACGACGTCGCCCTGCAGCCCCACCACGCGCTTGATAATCTT
CTGGGCGGGATCCTTGGGTGAAATGAGCGATATTATGTCGCCGCGCTCCA
CCTGACTGTTGTGGGTGCCCCAGCGCAGCAGGAACACATAGTCCTTTTCA
TCCGGCACGGGATTGAGAGCGGGCTGCATGGAGATGCCATCCACCCTGGC
CACATAACCAACGCAGTCCAGGAAAGTGACGCCAAGTGGCAGAGCGTACA
GCAAGGACTTGCCAAAGAACCGAAATGCCATGTCGACTGATAACT
BO17404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-PA | 516 | CG11110-RA | 1..513 | 531..19 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-RA | 752 | CG11110-RA | 95..608 | 532..19 | 2570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20641995..20642414 | 438..19 | 2100 | 100 | Minus |
2R | 25286936 | 2R | 20641836..20641931 | 532..437 | 480 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 1860..1910 | 53..5 | 105 | 72.5 | Minus |
BO17404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:34 Download gff for
BO17404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-PA | 1..516 | 18..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:59 Download gff for
BO17404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 87..608 | 19..545 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:32 Download gff for
BO17404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 87..608 | 19..545 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:32 Download gff for
BO17404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20641828..20641930 | 438..545 | 95 | -> | Minus |
2R | 20641996..20642414 | 19..437 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:59 Download gff for
BO17404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16529333..16529435 | 438..545 | 95 | -> | Minus |
arm_2R | 16529501..16529919 | 19..437 | 100 | | Minus |
BO17404.complete Sequence
547 bp assembled on 2006-10-11
GenBank Submission: FJ634107
> BO17404.complete
GAAGTTATCAGTCGACATGGCATTTCGGTTCTTTGGCAAGTCCTTGCTGT
ACGCTCTGCCACTTGGCGTCACTTTCCTGGACTGCGTTGGTTATGTGGCC
AGGGTGGATGGCATCTCCATGCAGCCCGCTCTCAATCCCGTGCCGGATGA
AAAGGACTATGTGTTCCTGCTGCGCTGGGGCACCCACAACAGTCAGGTGG
AGCGCGGCGACATAATATCGCTCATTTCACCCAAGGATCCCGCCCAGAAG
ATTATCAAGCGCGTGGTGGGGCTGCAGGGCGACGTCGTGTCCACGCTGGG
CTACAAGCACGAGATCGTTCGCGTACCCGAAGGACATTGTTGGGTGGAGG
GCGATCACACAGGCCACTCCATGGACAGCAATACCTTTGGACCCGTCGCC
CTGGGCCTGATGTCCGCGCGGGCAGTGGCCATCGTGTGGCCACCGGAACG
CTGGCGAATACTGGAGAACGAACTGCCGCGGCGACGGAGACCCATACAGG
CCTCCAAGAACTCCAGCAACTACTACAACGCAAGCTTTCTAGACCAT
BO17404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-RA | 516 | CG11110-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-RA | 752 | CG11110-RA | 95..608 | 16..529 | 2570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20641995..20642414 | 110..529 | 2100 | 100 | Plus |
2R | 25286936 | 2R | 20641836..20641931 | 16..111 | 480 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 1860..1910 | 495..543 | 105 | 72.5 | Plus |
BO17404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:10 Download gff for
BO17404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 1..516 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:12 Download gff for
BO17404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 27..551 | 3..530 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:49 Download gff for
BO17404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 96..608 | 17..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:10 Download gff for
BO17404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 27..551 | 3..530 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:10 Download gff for
BO17404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 96..608 | 17..531 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:10 Download gff for
BO17404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20641837..20641930 | 17..110 | 100 | -> | Plus |
2R | 20641996..20642414 | 111..531 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:49 Download gff for
BO17404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16529342..16529435 | 17..110 | 100 | -> | Plus |
arm_2R | 16529501..16529919 | 111..531 | 99 | | Plus |
BO17404.pep Sequence
Translation from 16 to 547
> BO17404.pep
MAFRFFGKSLLYALPLGVTFLDCVGYVARVDGISMQPALNPVPDEKDYVF
LLRWGTHNSQVERGDIISLISPKDPAQKIIKRVVGLQGDVVSTLGYKHEI
VRVPEGHCWVEGDHTGHSMDSNTFGPVALGLMSARAVAIVWPPERWRILE
NELPRRRRPIQASKNSSNYYNASFLDH
BO17404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-PA | 171 | CG11110-PA | 1..171 | 1..171 | 910 | 100 | Plus |
CG9240-PA | 166 | CG9240-PA | 9..159 | 4..142 | 169 | 33.1 | Plus |
CG9240-PB | 128 | CG9240-PB | 1..121 | 35..142 | 157 | 34.9 | Plus |