Clone BO17404 Report

Search the DGRC for BO17404

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG11110-RA
Protein status:BO17404.pep: validated full length
Sequenced Size:547

Clone Sequence Records

BO17404.5prime Sequence

545 bp (545 high quality bases) assembled on 2006-10-13

> BO17404.5prime
GAAGTTATCAGTCGACATGGCATTTCGGTTCTTTGGCAAGTCCTTGCTGT
ACGCTCTGCCACTTGGCGTCACTTTCCTGGACTGCGTTGGTTATGTGGCC
AGGGTGGATGGCATCTCCATGCAGCCCGCTCTCAATCCCGTGCCGGATGA
AAAGGACTATGTGTTCCTGCTGCGCTGGGGCACCCACAACAGTCAGGTGG
AGCGCGGCGACATAATATCGCTCATTTCACCCAAGGATCCCGCCCAGAAG
ATTATCAAGCGCGTGGTGGGGCTGCAGGGCGACGTCGTGTCCACGCTGGG
CTACAAGCACGAGATCGTTCGCGTACCCGAAGGACATTGTTGGGTGGAGG
GCGATCACACAGGCCACTCCATGGACAGCAATACCTTTGGACCCGTCGCC
CTGGGCCTGATGTCCGCGCGGGCAGTGGCCATCGTGTGGCCACCGGAACG
CTGGCGAATACTGGAGAACGAACTGCCGCGGCGACGGAGACCCATACAGG
CCTCCAAGAACTCCAGCAACTACTACAACGCAAGCTTTCTAGACC

BO17404.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-PA 516 CG11110-RA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-RA 752 CG11110-RA 95..608 16..529 2570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20641995..20642414 110..529 2100 100 Plus
2R 25286936 2R 20641836..20641931 16..111 480 100 Plus
Blast to na_te.dros performed 2015-02-08 12:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1860..1910 495..543 105 72.5 Plus

BO17404.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:34 Download gff for BO17404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11110-PA 1..516 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:27 Download gff for BO17404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 87..608 3..529 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:05 Download gff for BO17404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 87..608 3..529 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:05 Download gff for BO17404.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20641828..20641930 3..110 95 -> Plus
2R 20641996..20642414 111..529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:27 Download gff for BO17404.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16529333..16529435 3..110 95 -> Plus
arm_2R 16529501..16529919 111..529 100   Plus

BO17404.3prime Sequence

545 bp (545 high quality bases) assembled on 2006-10-13

> BO17404.3prime
ATGGTCTAGAAAGCTTGCGTTGTAGTAGTTGCTGGAGTTCTTGGAGGCCT
GTATGGGTCTCCGTCGCCGCGGCAGTTCGTTCTCCAGTATTCGCCAGCGT
TCCGGTGGCCACACGATGGCCACTGCCCGCGCGGACATCAGGCCCAGGGC
GACGGGTCCAAAGGTATTGCTGTCCATGGAGTGGCCTGTGTGATCGCCCT
CCACCCAACAATGTCCTTCGGGTACGCGAACGATCTCGTGCTTGTAGCCC
AGCGTGGACACGACGTCGCCCTGCAGCCCCACCACGCGCTTGATAATCTT
CTGGGCGGGATCCTTGGGTGAAATGAGCGATATTATGTCGCCGCGCTCCA
CCTGACTGTTGTGGGTGCCCCAGCGCAGCAGGAACACATAGTCCTTTTCA
TCCGGCACGGGATTGAGAGCGGGCTGCATGGAGATGCCATCCACCCTGGC
CACATAACCAACGCAGTCCAGGAAAGTGACGCCAAGTGGCAGAGCGTACA
GCAAGGACTTGCCAAAGAACCGAAATGCCATGTCGACTGATAACT

BO17404.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-PA 516 CG11110-RA 1..513 531..19 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-RA 752 CG11110-RA 95..608 532..19 2570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20641995..20642414 438..19 2100 100 Minus
2R 25286936 2R 20641836..20641931 532..437 480 100 Minus
Blast to na_te.dros performed 2015-02-11 17:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1860..1910 53..5 105 72.5 Minus

BO17404.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:34 Download gff for BO17404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11110-PA 1..516 18..531 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:59 Download gff for BO17404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 87..608 19..545 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:32 Download gff for BO17404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 87..608 19..545 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:32 Download gff for BO17404.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20641828..20641930 438..545 95 -> Minus
2R 20641996..20642414 19..437 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:59 Download gff for BO17404.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16529333..16529435 438..545 95 -> Minus
arm_2R 16529501..16529919 19..437 100   Minus

BO17404.complete Sequence

547 bp assembled on 2006-10-11

GenBank Submission: FJ634107

> BO17404.complete
GAAGTTATCAGTCGACATGGCATTTCGGTTCTTTGGCAAGTCCTTGCTGT
ACGCTCTGCCACTTGGCGTCACTTTCCTGGACTGCGTTGGTTATGTGGCC
AGGGTGGATGGCATCTCCATGCAGCCCGCTCTCAATCCCGTGCCGGATGA
AAAGGACTATGTGTTCCTGCTGCGCTGGGGCACCCACAACAGTCAGGTGG
AGCGCGGCGACATAATATCGCTCATTTCACCCAAGGATCCCGCCCAGAAG
ATTATCAAGCGCGTGGTGGGGCTGCAGGGCGACGTCGTGTCCACGCTGGG
CTACAAGCACGAGATCGTTCGCGTACCCGAAGGACATTGTTGGGTGGAGG
GCGATCACACAGGCCACTCCATGGACAGCAATACCTTTGGACCCGTCGCC
CTGGGCCTGATGTCCGCGCGGGCAGTGGCCATCGTGTGGCCACCGGAACG
CTGGCGAATACTGGAGAACGAACTGCCGCGGCGACGGAGACCCATACAGG
CCTCCAAGAACTCCAGCAACTACTACAACGCAAGCTTTCTAGACCAT

BO17404.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-RA 516 CG11110-PA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-RA 752 CG11110-RA 95..608 16..529 2570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20641995..20642414 110..529 2100 100 Plus
2R 25286936 2R 20641836..20641931 16..111 480 100 Plus
Blast to na_te.dros performed 2014-11-28 01:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1860..1910 495..543 105 72.5 Plus

BO17404.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:10 Download gff for BO17404.complete
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 1..516 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:12 Download gff for BO17404.complete
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 27..551 3..530 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:49 Download gff for BO17404.complete
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 96..608 17..531 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:10 Download gff for BO17404.complete
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 27..551 3..530 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:10 Download gff for BO17404.complete
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 96..608 17..531 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:10 Download gff for BO17404.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20641837..20641930 17..110 100 -> Plus
2R 20641996..20642414 111..531 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:49 Download gff for BO17404.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16529342..16529435 17..110 100 -> Plus
arm_2R 16529501..16529919 111..531 99   Plus

BO17404.pep Sequence

Translation from 16 to 547

> BO17404.pep
MAFRFFGKSLLYALPLGVTFLDCVGYVARVDGISMQPALNPVPDEKDYVF
LLRWGTHNSQVERGDIISLISPKDPAQKIIKRVVGLQGDVVSTLGYKHEI
VRVPEGHCWVEGDHTGHSMDSNTFGPVALGLMSARAVAIVWPPERWRILE
NELPRRRRPIQASKNSSNYYNASFLDH

BO17404.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-PA 171 CG11110-PA 1..171 1..171 910 100 Plus
CG9240-PA 166 CG9240-PA 9..159 4..142 169 33.1 Plus
CG9240-PB 128 CG9240-PB 1..121 35..142 157 34.9 Plus