Clone Sequence Records
BO17407.3prime Sequence
586 bp (586 high quality bases) assembled on 2006-10-13
> BO17407.3prime
ATGGTCTAGAAAGCTTGCGAGCTGAAATTGACGGAAGTGAGGGTAATGTG
ATGGACTGGAGACCACAAAGCGTTCGAGGAATGGGACACACGTTATGAGG
TAGGCCAGGCGGTTGACCCAACGCGGAATTTTACGGCCACAGACGAGATG
CGCCAGGCAGTTGGAGAAGTGGTTGCAATTCTTGCTGGTCAAGTGGTAGC
TGGTCCCGCGGAACTCGAAGCCCAGCAGGTTGATAACGCGCTTCACTTCA
GCGCAGGTAAAGTCGGTGTAGCCGAGCAGAATGCTCTTCCGGAAACGGAA
GTGTTCGCCCAACTCCTCCTGCCCATTGCAGGGATGAATCTCAAAGATGC
CGGAAATGGAGAGATTGAGCGCCAAAAATGCGTACTCTCGCCCGTACAAC
TGGACGCCGGAATGGAAGACACCCAAGCCCAGCGGAAAAGTGTAGTTGTT
GCTGGTGGACAGGTCGTAGATGTTCAGCATTACCGGCTCCCTCTGTTCAA
TGTCTTCGGTACTGATCTCCCTGTCGCCGCACAGGCAGCGCATCCTTCGC
AGGGCATTCAGGAACATGTCGACTGATAACTTCGTA
BO17407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-PA | 552 | CG12231-RA | 1..549 | 567..19 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-RA | 711 | CG12231-RA | 122..670 | 567..19 | 2745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19531073..19531621 | 19..567 | 2745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:03:32 has no hits.
BO17407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:38 Download gff for
BO17407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-PA | 1..552 | 15..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:22 Download gff for
BO17407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 117..680 | 7..573 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:43 Download gff for
BO17407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 117..680 | 7..573 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:43 Download gff for
BO17407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19531063..19531626 | 7..573 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:22 Download gff for
BO17407.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19425096..19425659 | 7..573 | 98 | | Plus |
BO17407.5prime Sequence
581 bp (581 high quality bases) assembled on 2006-10-13
> BO17407.5prime
GAAGTTATCAGTCGACATGTTCCTGAATGCCCTGCGAAGGATGCGCTGCC
TGTGCGGCGACAGGGAGATCAGTACCGAAGACATTGAACAGAGGGAGCCG
GTAATGCTGAACATCTACGACCTGTCCACCAGCAACAACTACACTTTTCC
GCTGGGCTTGGGTGTCTTCCATTCCGGCGTCCAGTTGTACGGGCGAGAGT
ACGCATTTTTGGCGCTCAATCTCTCCATTTCCGGCATCTTTGAGATTCAT
CCCTGCAATGGGCAGGAGGAGTTGGGCGAACACTTCCGTTTCCGGAAGAG
CATTCTGCTCGGCTACACCGACTTTACCTGCGCTGAAGTGAAGCGCGTTA
TCAACCTGCTGGGCTTCGAGTTCCGCGGGACCAGCTACCACTTGACCAGC
AAGAATTGCAACCACTTCTCCAACTGCCTGGCGCATCTCGTCTGTGGCCG
TAAAATTCCGCGTTGGGTCAACCGCCTGGCCTACCTCATAACGTGTGTCC
CATTCCTCGAACGCTTTGTGGTCTCCAGTCCATCACATTACCCTCACTTC
CGTCAATTTCAGCTCGCAAGCTTTCTAGACC
BO17407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-PA | 552 | CG12231-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-RA | 711 | CG12231-RA | 122..670 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19531073..19531621 | 565..17 | 2745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:51:27 has no hits.
BO17407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:39 Download gff for
BO17407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-PA | 1..552 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:25 Download gff for
BO17407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 117..680 | 11..577 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:01 Download gff for
BO17407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 117..680 | 11..577 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:01 Download gff for
BO17407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19531063..19531626 | 11..577 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:25 Download gff for
BO17407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19425096..19425659 | 11..577 | 98 | | Minus |
BO17407.complete Sequence
583 bp assembled on 2006-10-11
GenBank Submission: FJ634108
> BO17407.complete
GAAGTTATCAGTCGACATGTTCCTGAATGCCCTGCGAAGGATGCGCTGCC
TGTGCGGCGACAGGGAGATCAGTACCGAAGACATTGAACAGAGGGAGCCG
GTAATGCTGAACATCTACGACCTGTCCACCAGCAACAACTACACTTTTCC
GCTGGGCTTGGGTGTCTTCCATTCCGGCGTCCAGTTGTACGGGCGAGAGT
ACGCATTTTTGGCGCTCAATCTCTCCATTTCCGGCATCTTTGAGATTCAT
CCCTGCAATGGGCAGGAGGAGTTGGGCGAACACTTCCGTTTCCGGAAGAG
CATTCTGCTCGGCTACACCGACTTTACCTGCGCTGAAGTGAAGCGCGTTA
TCAACCTGCTGGGCTTCGAGTTCCGCGGGACCAGCTACCACTTGACCAGC
AAGAATTGCAACCACTTCTCCAACTGCCTGGCGCATCTCGTCTGTGGCCG
TAAAATTCCGCGTTGGGTCAACCGCCTGGCCTACCTCATAACGTGTGTCC
CATTCCTCGAACGCTTTGTGGTCTCCAGTCCATCACATTACCCTCACTTC
CGTCAATTTCAGCTCGCAAGCTTTCTAGACCAT
BO17407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-RA | 552 | CG12231-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-RA | 711 | CG12231-RA | 122..670 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19531073..19531621 | 565..17 | 2745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:00:59 has no hits.
BO17407.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:11 Download gff for
BO17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 1..552 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:13 Download gff for
BO17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 1..558 | 17..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:03 Download gff for
BO17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 127..670 | 22..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:11 Download gff for
BO17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 1..558 | 17..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:42 Download gff for
BO17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12231-RA | 127..670 | 22..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:42 Download gff for
BO17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19531071..19531616 | 22..567 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:03 Download gff for
BO17407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19425104..19425649 | 22..567 | 99 | | Minus |
BO17407.pep Sequence
Translation from 16 to 583
> BO17407.pep
MFLNALRRMRCLCGDREISTEDIEQREPVMLNIYDLSTSNNYTFPLGLGV
FHSGVQLYGREYAFLALNLSISGIFEIHPCNGQEELGEHFRFRKSILLGY
TDFTCAEVKRVINLLGFEFRGTSYHLTSKNCNHFSNCLAHLVCGRKIPRW
VNRLAYLITCVPFLERFVVSSPSHYPHFRQFQLASFLDH
BO17407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12231-PA | 183 | CG12231-PA | 1..183 | 1..183 | 987 | 100 | Plus |
| CG7222-PB | 205 | CG7222-PB | 24..175 | 14..166 | 426 | 50.3 | Plus |
| CG7222-PA | 205 | CG7222-PA | 24..175 | 14..166 | 426 | 50.3 | Plus |
