Clone Sequence Records
BO17408.5prime Sequence
266 bp (266 high quality bases) assembled on 2006-10-13
> BO17408.5prime
GAAGTTATCAGTCGACATGTTCACCGAAACCGCTCTTGTTTCCAACTTCA
ATGGAGTGACAGAGAAGAAATCTCTTACCGGCGCCTCCACCAACCTGAAG
AAGCTGCTGAAGACCATCAAGAAGGTCTTCAAGAACTCCAAGCCTTCGAA
GGAGATTCCGATCCCCAACATCATCTACTCTTGCAATACTGAGGAGGAGC
ACCAGAATTGGCTCAACGAACAACTGGAGGCCATGGCAATCCATCTTCAC
GCAAGCTTTCTAGACC
BO17408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12487-PA | 237 | BobA-RA | 1..234 | 17..250 | 1170 | 100 | Plus |
CG13465-PA | 237 | CG13465-RA | 8..234 | 24..250 | 1110 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BobA-RA | 627 | CG12487-RA | 58..291 | 17..250 | 1170 | 100 | Plus |
CG13465-RA | 602 | CG13465-RA | 40..273 | 17..250 | 1125 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14945835..14946068 | 250..17 | 1170 | 100 | Minus |
3L | 28110227 | 3L | 14944059..14944292 | 250..17 | 1125 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:38:14 has no hits.
BO17408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:40 Download gff for
BO17408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12487-PA | 1..237 | 17..253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:42 Download gff for
BO17408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 58..297 | 17..258 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:57 Download gff for
BO17408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 58..297 | 17..258 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:57 Download gff for
BO17408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14945829..14946068 | 17..258 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:42 Download gff for
BO17408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14938929..14939168 | 17..258 | 98 | | Minus |
BO17408.3prime Sequence
266 bp (266 high quality bases) assembled on 2006-10-13
> BO17408.3prime
ATGGTCTAGAAAGCTTGCGTGAAGATGGATTGCCATGGCCTCCAGTTGTT
CGTTGAGCCAATTCTGGTGCTCCTCCTCAGTATTGCAAGAGTAGATGATG
TTGGGGATCGGAATCTCCTTCGAAGGCTTGGAGTTCTTGAAGACCTTCTT
GATGGTCTTCAGCAGCTTCTTCAGGTTGGTGGAGGCGCCGGTAAGAGATT
TCTTCTCTGTCACTCCATTGAAGTTGGAAACAAGAGCGGTTTCGGTGAAC
ATGTCGACTGATAACT
BO17408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12487-PA | 237 | BobA-RA | 1..234 | 252..19 | 1170 | 100 | Minus |
CG13465-PA | 237 | CG13465-RA | 8..234 | 245..19 | 1110 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BobA-RA | 627 | CG12487-RA | 58..291 | 252..19 | 1170 | 100 | Minus |
CG13465-RA | 602 | CG13465-RA | 40..273 | 252..19 | 1125 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14945835..14946068 | 19..252 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 14944059..14944292 | 19..252 | 1125 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:44:35 has no hits.
BO17408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:40 Download gff for
BO17408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12487-PA | 1..237 | 16..252 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:00 Download gff for
BO17408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 58..297 | 11..252 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:54 Download gff for
BO17408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 58..297 | 11..252 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:54 Download gff for
BO17408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14945829..14946068 | 11..252 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:00 Download gff for
BO17408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14938929..14939168 | 11..252 | 98 | | Plus |
BO17408.complete Sequence
268 bp assembled on 2006-10-11
GenBank Submission: FJ634109
> BO17408.complete
GAAGTTATCAGTCGACATGTTCACCGAAACCGCTCTTGTTTCCAACTTCA
ATGGAGTGACAGAGAAGAAATCTCTTACCGGCGCCTCCACCAACCTGAAG
AAGCTGCTGAAGACCATCAAGAAGGTCTTCAAGAACTCCAAGCCTTCGAA
GGAGATTCCGATCCCCAACATCATCTACTCTTGCAATACTGAGGAGGAGC
ACCAGAATTGGCTCAACGAACAACTGGAGGCCATGGCAATCCATCTTCAC
GCAAGCTTTCTAGACCAT
BO17408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:31:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BobA-RA | 237 | CG12487-PA | 1..234 | 17..250 | 1170 | 100 | Plus |
CG13465-RA | 237 | CG13465-PA | 1..234 | 17..250 | 1125 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BobA-RA | 627 | CG12487-RA | 58..291 | 17..250 | 1170 | 100 | Plus |
CG13465-RA | 602 | CG13465-RA | 40..273 | 17..250 | 1125 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14945835..14946068 | 250..17 | 1170 | 100 | Minus |
3L | 28110227 | 3L | 14944059..14944292 | 250..17 | 1125 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:31:50 has no hits.
BO17408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:12 Download gff for
BO17408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 1..237 | 17..253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:15 Download gff for
BO17408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 45..284 | 17..258 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:46 Download gff for
BO17408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 63..291 | 22..252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:12 Download gff for
BO17408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 45..284 | 17..258 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:08 Download gff for
BO17408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 63..291 | 22..252 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:08 Download gff for
BO17408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14945832..14946063 | 22..252 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:46 Download gff for
BO17408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14938932..14939163 | 22..252 | 99 | | Minus |
BO17408.pep Sequence
Translation from 16 to 268
> BO17408.pep
MFTETALVSNFNGVTEKKSLTGASTNLKKLLKTIKKVFKNSKPSKEIPIP
NIIYSCNTEEEHQNWLNEQLEAMAIHLHASFLDH
BO17408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BobA-PA | 78 | CG12487-PA | 1..78 | 1..78 | 403 | 100 | Plus |
CG13465-PA | 78 | CG13465-PA | 1..78 | 1..78 | 394 | 97.4 | Plus |