Clone BO17409 Report

Search the DGRC for BO17409

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG42299-RA
Protein status:BO17409.pep: validated full length
Sequenced Size:580

Clone Sequence Records

BO17409.3prime Sequence

578 bp (578 high quality bases) assembled on 2006-10-13

> BO17409.3prime
ATGGTCTAGAAAGCTTGCGTCCTCATCCGAGGAAGTTTCATTCTTGATCT
TGTCGGACTTGCGCTTTTGCAACTCCTGCTCCACGTCGGGGTCCTTGACC
AGGTGCTCTAACTTGATGTCGGACAAGTTGGGACAGTCGCGCACCGGGCA
TAGGATGCCAATGTTGTCCTTGATGATCATTAAAACCGTTTCGCGGTCGT
AGATATGACCGCACCTTTTGTTGCGCACGGGGTGCTTTATCAGGAGCTTG
GACCAGGGATCGTGGAACGGGACGACCTCGACGCCGAAGTCTTCCATGAT
AAGGTCCTCATCAAGGCCGGCGATATTCTTTTGAGCTTCTGATTCCACCG
CATTCATGTAGTTCGTGTCCTCAAGTGAGTTATTGACATCGATGCGCATC
TGCTCCACAGCTTCGGGGCGCTCCTTGCAGACTTCCTCGGACTTCTCGAT
GGTGTTGCTAGAGTTTTTGGTTAGCAACTTCTCCCCGTCATCGCTGGAAT
TGGACACGACTTCTGCCATTTCCCTGAAGAGCTTTTGGTGGGATTTCGGG
TCCATTTTGATCATGTCGACTGATAACT

BO17409.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32584-PB 549 CG32584-RB 1..546 564..19 2730 100 Minus
CG32584-PA 366 CG32584-RA 1..311 564..254 1555 100 Minus
CG15645-PB 534 CG15645-RB 44..138 470..376 325 93.6 Minus
CG15645-PA 693 CG15645-RA 203..297 470..376 325 93.6 Minus
CG13732-PA 702 CG13732-RA 399..521 313..191 290 89.4 Minus
CG32584-PA 366 CG32584-RA 311..366 235..180 255 98.2 Minus
CG15645-PB 534 CG15645-RB 290..341 242..191 160 92.3 Minus
CG15645-PA 693 CG15645-RA 449..500 242..191 160 92.3 Minus
CG13732-PA 702 CG13732-RA 216..302 469..383 160 87.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG42299-RA 679 CG42299-RA 21..566 564..19 2730 100 Minus
CG42300-RA 726 CG42300-RA 71..613 564..19 2600 98.5 Minus
cerv-RD 1141 CG15645-RD 485..955 470..18 925 80.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15575060..15575552 19..511 2465 100 Plus
X 23542271 X 15555366..15555855 19..511 2325 98.6 Plus
X 23542271 X 15577172..15577642 18..470 895 79.8 Plus
3L 28110227 3L 17479760..17480055 313..18 610 80.4 Minus
X 23542271 X 15575609..15575663 510..564 275 100 Plus
3L 28110227 3L 17479577..17479712 469..334 275 80.1 Minus
X 23542271 X 15555921..15555975 510..564 260 98.2 Plus
Blast to na_te.dros performed on 2015-02-10 18:07:47 has no hits.

BO17409.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:41 Download gff for BO17409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32584-PB 1..549 15..564 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:54 Download gff for BO17409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..570 14..564 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:12 Download gff for BO17409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..570 14..564 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:12 Download gff for BO17409.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15575061..15575550 20..509 100 <- Plus
X 15575609..15575663 510..564 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:54 Download gff for BO17409.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15469094..15469583 20..509 100 <- Plus
arm_X 15469642..15469696 510..564 100   Plus

BO17409.5prime Sequence

578 bp (578 high quality bases) assembled on 2006-10-13

> BO17409.5prime
GAAGTTATCAGTCGACATGATCAAAATGGACCCGAAATCCCACCAAAAGC
TCTTCAGGGAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGAG
AAGTTGCTAACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGT
CTGCAAGGAGCGCCCCGAAGCTGTGGAGCAGATGCGCATCGATGTCAATA
ACTCACTTGAGGACACGAACTACATGAATGCGGTGGAATCAGAAGCTCAA
AAGAATATCGCCGGCCTTGATGAGGACCTTATCATGGAAGACTTCGGCGT
CGAGGTCGTCCCGTTCCACGATCCCTGGTCCAAGCTCCTGATAAAGCACC
CCGTGCGCAACAAAAGGTGCGGTCATATCTACGACCGCGAAACGGTTTTA
ATGATCATCAAGGACAACATTGGCATCCTATGCCCGGTGCGCGACTGTCC
CAACTTGTCCGACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGG
AGCAGGAGTTGCAAAAGCGCAAGTCCGACAAGATCAAGAATGAAACTTCC
TCGGATGAGGACGCAAGCTTTCTAGACC

BO17409.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32584-PB 549 CG32584-RB 1..546 17..562 2730 100 Plus
CG32584-PA 366 CG32584-RA 1..311 17..327 1555 100 Plus
CG15645-PB 534 CG15645-RB 44..138 111..205 325 93.6 Plus
CG15645-PA 693 CG15645-RA 203..297 111..205 325 93.6 Plus
CG13732-PA 702 CG13732-RA 399..521 268..390 290 89.4 Plus
CG32584-PA 366 CG32584-RA 311..366 346..401 255 98.2 Plus
CG15645-PB 534 CG15645-RB 290..341 339..390 160 92.3 Plus
CG15645-PA 693 CG15645-RA 449..500 339..390 160 92.3 Plus
CG13732-PA 702 CG13732-RA 216..302 112..198 160 87.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG42299-RA 679 CG42299-RA 21..566 17..562 2730 100 Plus
CG42300-RA 726 CG42300-RA 71..613 17..562 2600 98.5 Plus
cerv-RD 1141 CG15645-RD 485..955 111..563 925 80.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15575060..15575552 562..70 2465 100 Minus
X 23542271 X 15555366..15555855 562..70 2325 98.6 Minus
X 23542271 X 15577172..15577642 563..111 895 79.8 Minus
3L 28110227 3L 17479760..17480055 268..563 610 80.4 Plus
X 23542271 X 15575609..15575663 71..17 275 100 Minus
3L 28110227 3L 17479577..17479712 112..247 275 80.1 Plus
X 23542271 X 15555921..15555975 71..17 260 98.2 Minus
Blast to na_te.dros performed on 2015-02-10 21:52:08 has no hits.

BO17409.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:41 Download gff for BO17409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32584-PB 1..549 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:28 Download gff for BO17409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..570 17..567 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:08 Download gff for BO17409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..570 17..567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:08 Download gff for BO17409.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15575061..15575550 72..561 100 <- Minus
X 15575609..15575663 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:28 Download gff for BO17409.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15469094..15469583 72..561 100 <- Minus
arm_X 15469642..15469696 17..71 100   Minus

BO17409.complete Sequence

580 bp assembled on 2006-10-11

GenBank Submission: FJ634110

> BO17409.complete
GAAGTTATCAGTCGACATGATCAAAATGGACCCGAAATCCCACCAAAAGC
TCTTCAGGGAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGAG
AAGTTGCTAACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGT
CTGCAAGGAGCGCCCCGAAGCTGTGGAGCAGATGCGCATCGATGTCAATA
ACTCACTTGAGGACACGAACTACATGAATGCGGTGGAATCAGAAGCTCAA
AAGAATATCGCCGGCCTTGATGAGGACCTTATCATGGAAGACTTCGGCGT
CGAGGTCGTCCCGTTCCACGATCCCTGGTCCAAGCTCCTGATAAAGCACC
CCGTGCGCAACAAAAGGTGCGGTCATATCTACGACCGCGAAACGGTTTTA
ATGATCATCAAGGACAACATTGGCATCCTATGCCCGGTGCGCGACTGTCC
CAACTTGTCCGACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGG
AGCAGGAGTTGCAAAAGCGCAAGTCCGACAAGATCAAGAATGAAACTTCC
TCGGATGAGGACGCAAGCTTTCTAGACCAT

BO17409.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG42299-RA 549 CG42299-PA 1..546 17..562 2730 100 Plus
CG42300-RA 546 CG42300-PA 1..543 17..562 2575 98.5 Plus
cerv-RD 693 CG15645-PD 203..673 111..563 895 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG42299-RA 679 CG42299-RA 21..566 17..562 2730 100 Plus
CG42300-RA 726 CG42300-RA 71..613 17..562 2575 98.5 Plus
cerv-RD 1141 CG15645-RD 485..955 111..563 895 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15575060..15575552 562..70 2465 100 Minus
X 23542271 X 15555366..15555855 562..70 2325 98.6 Minus
X 23542271 X 15577172..15577642 563..111 895 79.8 Minus
3L 28110227 3L 17479760..17480055 268..563 610 80.4 Plus
X 23542271 X 15575609..15575663 71..17 275 100 Minus
3L 28110227 3L 17479577..17479712 112..247 275 80.1 Plus
X 23542271 X 15555921..15555975 71..17 260 98.2 Minus
Blast to na_te.dros performed on 2014-11-28 00:30:36 has no hits.

BO17409.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:13 Download gff for BO17409.complete
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 1..549 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:17 Download gff for BO17409.complete
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..570 17..567 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:00 Download gff for BO17409.complete
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..566 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:13 Download gff for BO17409.complete
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..570 17..567 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:09 Download gff for BO17409.complete
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..566 17..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:09 Download gff for BO17409.complete
Subject Subject Range Query Range Percent Splice Strand
X 15575058..15575550 72..564 99 <- Minus
X 15575609..15575663 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:00 Download gff for BO17409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15469091..15469583 72..564 99 <- Minus
arm_X 15469642..15469696 17..71 100   Minus

BO17409.pep Sequence

Translation from 16 to 580

> BO17409.pep
MIKMDPKSHQKLFREMAEVVSNSSDDGEKLLTKNSSNTIEKSEEVCKERP
EAVEQMRIDVNNSLEDTNYMNAVESEAQKNIAGLDEDLIMEDFGVEVVPF
HDPWSKLLIKHPVRNKRCGHIYDRETVLMIIKDNIGILCPVRDCPNLSDI
KLEHLVKDPDVEQELQKRKSDKIKNETSSDEDASFLDH

BO17409.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42299-PA 182 CG32584-PA 1..182 1..182 945 100 Plus
CG42300-PA 181 CG42300-PA 1..181 1..182 919 98.4 Plus
cerv-PD 230 CG15645-PD 17..230 9..188 504 54.2 Plus
cerv-PA 230 CG15645-PA 17..230 9..188 504 54.2 Plus
cerv-PC 177 CG15645-PC 16..177 33..188 480 61.7 Plus