Clone Sequence Records
BO17409.3prime Sequence
578 bp (578 high quality bases) assembled on 2006-10-13
> BO17409.3prime
ATGGTCTAGAAAGCTTGCGTCCTCATCCGAGGAAGTTTCATTCTTGATCT
TGTCGGACTTGCGCTTTTGCAACTCCTGCTCCACGTCGGGGTCCTTGACC
AGGTGCTCTAACTTGATGTCGGACAAGTTGGGACAGTCGCGCACCGGGCA
TAGGATGCCAATGTTGTCCTTGATGATCATTAAAACCGTTTCGCGGTCGT
AGATATGACCGCACCTTTTGTTGCGCACGGGGTGCTTTATCAGGAGCTTG
GACCAGGGATCGTGGAACGGGACGACCTCGACGCCGAAGTCTTCCATGAT
AAGGTCCTCATCAAGGCCGGCGATATTCTTTTGAGCTTCTGATTCCACCG
CATTCATGTAGTTCGTGTCCTCAAGTGAGTTATTGACATCGATGCGCATC
TGCTCCACAGCTTCGGGGCGCTCCTTGCAGACTTCCTCGGACTTCTCGAT
GGTGTTGCTAGAGTTTTTGGTTAGCAACTTCTCCCCGTCATCGCTGGAAT
TGGACACGACTTCTGCCATTTCCCTGAAGAGCTTTTGGTGGGATTTCGGG
TCCATTTTGATCATGTCGACTGATAACT
BO17409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32584-PB | 549 | CG32584-RB | 1..546 | 564..19 | 2730 | 100 | Minus |
CG32584-PA | 366 | CG32584-RA | 1..311 | 564..254 | 1555 | 100 | Minus |
CG15645-PB | 534 | CG15645-RB | 44..138 | 470..376 | 325 | 93.6 | Minus |
CG15645-PA | 693 | CG15645-RA | 203..297 | 470..376 | 325 | 93.6 | Minus |
CG13732-PA | 702 | CG13732-RA | 399..521 | 313..191 | 290 | 89.4 | Minus |
CG32584-PA | 366 | CG32584-RA | 311..366 | 235..180 | 255 | 98.2 | Minus |
CG15645-PB | 534 | CG15645-RB | 290..341 | 242..191 | 160 | 92.3 | Minus |
CG15645-PA | 693 | CG15645-RA | 449..500 | 242..191 | 160 | 92.3 | Minus |
CG13732-PA | 702 | CG13732-RA | 216..302 | 469..383 | 160 | 87.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42299-RA | 679 | CG42299-RA | 21..566 | 564..19 | 2730 | 100 | Minus |
CG42300-RA | 726 | CG42300-RA | 71..613 | 564..19 | 2600 | 98.5 | Minus |
cerv-RD | 1141 | CG15645-RD | 485..955 | 470..18 | 925 | 80.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15575060..15575552 | 19..511 | 2465 | 100 | Plus |
X | 23542271 | X | 15555366..15555855 | 19..511 | 2325 | 98.6 | Plus |
X | 23542271 | X | 15577172..15577642 | 18..470 | 895 | 79.8 | Plus |
3L | 28110227 | 3L | 17479760..17480055 | 313..18 | 610 | 80.4 | Minus |
X | 23542271 | X | 15575609..15575663 | 510..564 | 275 | 100 | Plus |
3L | 28110227 | 3L | 17479577..17479712 | 469..334 | 275 | 80.1 | Minus |
X | 23542271 | X | 15555921..15555975 | 510..564 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:07:47 has no hits.
BO17409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:41 Download gff for
BO17409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32584-PB | 1..549 | 15..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:54 Download gff for
BO17409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..570 | 14..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:12 Download gff for
BO17409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..570 | 14..564 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:12 Download gff for
BO17409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15575061..15575550 | 20..509 | 100 | <- | Plus |
X | 15575609..15575663 | 510..564 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:54 Download gff for
BO17409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15469094..15469583 | 20..509 | 100 | <- | Plus |
arm_X | 15469642..15469696 | 510..564 | 100 | | Plus |
BO17409.5prime Sequence
578 bp (578 high quality bases) assembled on 2006-10-13
> BO17409.5prime
GAAGTTATCAGTCGACATGATCAAAATGGACCCGAAATCCCACCAAAAGC
TCTTCAGGGAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGAG
AAGTTGCTAACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGT
CTGCAAGGAGCGCCCCGAAGCTGTGGAGCAGATGCGCATCGATGTCAATA
ACTCACTTGAGGACACGAACTACATGAATGCGGTGGAATCAGAAGCTCAA
AAGAATATCGCCGGCCTTGATGAGGACCTTATCATGGAAGACTTCGGCGT
CGAGGTCGTCCCGTTCCACGATCCCTGGTCCAAGCTCCTGATAAAGCACC
CCGTGCGCAACAAAAGGTGCGGTCATATCTACGACCGCGAAACGGTTTTA
ATGATCATCAAGGACAACATTGGCATCCTATGCCCGGTGCGCGACTGTCC
CAACTTGTCCGACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGG
AGCAGGAGTTGCAAAAGCGCAAGTCCGACAAGATCAAGAATGAAACTTCC
TCGGATGAGGACGCAAGCTTTCTAGACC
BO17409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32584-PB | 549 | CG32584-RB | 1..546 | 17..562 | 2730 | 100 | Plus |
CG32584-PA | 366 | CG32584-RA | 1..311 | 17..327 | 1555 | 100 | Plus |
CG15645-PB | 534 | CG15645-RB | 44..138 | 111..205 | 325 | 93.6 | Plus |
CG15645-PA | 693 | CG15645-RA | 203..297 | 111..205 | 325 | 93.6 | Plus |
CG13732-PA | 702 | CG13732-RA | 399..521 | 268..390 | 290 | 89.4 | Plus |
CG32584-PA | 366 | CG32584-RA | 311..366 | 346..401 | 255 | 98.2 | Plus |
CG15645-PB | 534 | CG15645-RB | 290..341 | 339..390 | 160 | 92.3 | Plus |
CG15645-PA | 693 | CG15645-RA | 449..500 | 339..390 | 160 | 92.3 | Plus |
CG13732-PA | 702 | CG13732-RA | 216..302 | 112..198 | 160 | 87.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42299-RA | 679 | CG42299-RA | 21..566 | 17..562 | 2730 | 100 | Plus |
CG42300-RA | 726 | CG42300-RA | 71..613 | 17..562 | 2600 | 98.5 | Plus |
cerv-RD | 1141 | CG15645-RD | 485..955 | 111..563 | 925 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15575060..15575552 | 562..70 | 2465 | 100 | Minus |
X | 23542271 | X | 15555366..15555855 | 562..70 | 2325 | 98.6 | Minus |
X | 23542271 | X | 15577172..15577642 | 563..111 | 895 | 79.8 | Minus |
3L | 28110227 | 3L | 17479760..17480055 | 268..563 | 610 | 80.4 | Plus |
X | 23542271 | X | 15575609..15575663 | 71..17 | 275 | 100 | Minus |
3L | 28110227 | 3L | 17479577..17479712 | 112..247 | 275 | 80.1 | Plus |
X | 23542271 | X | 15555921..15555975 | 71..17 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:52:08 has no hits.
BO17409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:41 Download gff for
BO17409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32584-PB | 1..549 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:28 Download gff for
BO17409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..570 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:08 Download gff for
BO17409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..570 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:08 Download gff for
BO17409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15575061..15575550 | 72..561 | 100 | <- | Minus |
X | 15575609..15575663 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:28 Download gff for
BO17409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15469094..15469583 | 72..561 | 100 | <- | Minus |
arm_X | 15469642..15469696 | 17..71 | 100 | | Minus |
BO17409.complete Sequence
580 bp assembled on 2006-10-11
GenBank Submission: FJ634110
> BO17409.complete
GAAGTTATCAGTCGACATGATCAAAATGGACCCGAAATCCCACCAAAAGC
TCTTCAGGGAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGAG
AAGTTGCTAACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGT
CTGCAAGGAGCGCCCCGAAGCTGTGGAGCAGATGCGCATCGATGTCAATA
ACTCACTTGAGGACACGAACTACATGAATGCGGTGGAATCAGAAGCTCAA
AAGAATATCGCCGGCCTTGATGAGGACCTTATCATGGAAGACTTCGGCGT
CGAGGTCGTCCCGTTCCACGATCCCTGGTCCAAGCTCCTGATAAAGCACC
CCGTGCGCAACAAAAGGTGCGGTCATATCTACGACCGCGAAACGGTTTTA
ATGATCATCAAGGACAACATTGGCATCCTATGCCCGGTGCGCGACTGTCC
CAACTTGTCCGACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGG
AGCAGGAGTTGCAAAAGCGCAAGTCCGACAAGATCAAGAATGAAACTTCC
TCGGATGAGGACGCAAGCTTTCTAGACCAT
BO17409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42299-RA | 549 | CG42299-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
CG42300-RA | 546 | CG42300-PA | 1..543 | 17..562 | 2575 | 98.5 | Plus |
cerv-RD | 693 | CG15645-PD | 203..673 | 111..563 | 895 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42299-RA | 679 | CG42299-RA | 21..566 | 17..562 | 2730 | 100 | Plus |
CG42300-RA | 726 | CG42300-RA | 71..613 | 17..562 | 2575 | 98.5 | Plus |
cerv-RD | 1141 | CG15645-RD | 485..955 | 111..563 | 895 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15575060..15575552 | 562..70 | 2465 | 100 | Minus |
X | 23542271 | X | 15555366..15555855 | 562..70 | 2325 | 98.6 | Minus |
X | 23542271 | X | 15577172..15577642 | 563..111 | 895 | 79.8 | Minus |
3L | 28110227 | 3L | 17479760..17480055 | 268..563 | 610 | 80.4 | Plus |
X | 23542271 | X | 15575609..15575663 | 71..17 | 275 | 100 | Minus |
3L | 28110227 | 3L | 17479577..17479712 | 112..247 | 275 | 80.1 | Plus |
X | 23542271 | X | 15555921..15555975 | 71..17 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:30:36 has no hits.
BO17409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:13 Download gff for
BO17409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 1..549 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:17 Download gff for
BO17409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..570 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:00 Download gff for
BO17409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..566 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:13 Download gff for
BO17409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..570 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:09 Download gff for
BO17409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..566 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:09 Download gff for
BO17409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15575058..15575550 | 72..564 | 99 | <- | Minus |
X | 15575609..15575663 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:00 Download gff for
BO17409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15469091..15469583 | 72..564 | 99 | <- | Minus |
arm_X | 15469642..15469696 | 17..71 | 100 | | Minus |
BO17409.pep Sequence
Translation from 16 to 580
> BO17409.pep
MIKMDPKSHQKLFREMAEVVSNSSDDGEKLLTKNSSNTIEKSEEVCKERP
EAVEQMRIDVNNSLEDTNYMNAVESEAQKNIAGLDEDLIMEDFGVEVVPF
HDPWSKLLIKHPVRNKRCGHIYDRETVLMIIKDNIGILCPVRDCPNLSDI
KLEHLVKDPDVEQELQKRKSDKIKNETSSDEDASFLDH
BO17409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42299-PA | 182 | CG32584-PA | 1..182 | 1..182 | 945 | 100 | Plus |
CG42300-PA | 181 | CG42300-PA | 1..181 | 1..182 | 919 | 98.4 | Plus |
cerv-PD | 230 | CG15645-PD | 17..230 | 9..188 | 504 | 54.2 | Plus |
cerv-PA | 230 | CG15645-PA | 17..230 | 9..188 | 504 | 54.2 | Plus |
cerv-PC | 177 | CG15645-PC | 16..177 | 33..188 | 480 | 61.7 | Plus |