Clone Sequence Records
BO17410.3prime Sequence
521 bp (521 high quality bases) assembled on 2006-10-13
> BO17410.3prime
ATGGTCTAGAAAGCTTGCAATATTCAGATCCGGCTGGCGGAGTCGCGTGA
CCCGTTCGGCGTTCTTGACGTGCTCCTTCAACAGCCCCATGATCTCCGTG
TCGTACTCCTTGGGCGTGGGCTTCACCTCGGTGGCCCAGTAATAGATATC
CCAGTCGTTGCTGACCCCGTTGATCAACTGGTCGTACTGCGCCGTCTGCT
CGGCGCTGAAGTTCTGGAGATGCTTGGCCGCAAAGGTGCTCAGCAGAAGA
TCGTTCTCCAGCATTCCGCGCTTGCGCGATTGGTACAAAAGCCGTTGCTT
GCGAGTTTCCAACGGCTCGTTTGGACGCACCGGATACTCCGGCAGTGGAA
GATAATCCGGGTCCTCGTAGTCCACAATCACGTCGTTGAAAGTGCTGGCC
AGTGGTGGTGGCGGTGGAGGAGAGTCCTTCATGTTGGACATGGAGCGTCT
CCACGGGAGGAAGATCCAACCCGAAATATCCATTGTCAACCGTAGTTGGC
GCAGCATGTCGACTGATAACT
BO17410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14757-PA | 492 | CG14757-RA | 1..489 | 507..19 | 2445 | 100 | Minus |
CG12895-PA | 471 | CG12895-RA | 289..347 | 204..146 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14757-RA | 739 | CG14757-RA | 117..605 | 507..19 | 2445 | 100 | Minus |
CG12895-RB | 667 | CG12895-RB | 160..410 | 378..128 | 565 | 82.1 | Minus |
CG12895-RA | 593 | CG12895-RA | 160..410 | 378..128 | 565 | 82.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8172498..8172772 | 19..293 | 1375 | 100 | Plus |
2R | 25286936 | 2R | 8173172..8173370 | 292..490 | 995 | 100 | Plus |
2R | 25286936 | 2R | 10436855..10436997 | 128..270 | 415 | 86 | Plus |
Blast to na_te.dros performed 2015-02-10 21:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2226..2298 | 411..483 | 112 | 64.9 | Plus |
BO17410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:42 Download gff for
BO17410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14757-PA | 1..492 | 18..507 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:26 Download gff for
BO17410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14757-RA | 113..610 | 13..515 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:26 Download gff for
BO17410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14757-RA | 113..610 | 13..515 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:26 Download gff for
BO17410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8172493..8172771 | 13..292 | 98 | <- | Plus |
2R | 8173173..8173369 | 293..489 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:26 Download gff for
BO17410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4059998..4060276 | 13..292 | 98 | <- | Plus |
arm_2R | 4060678..4060874 | 293..489 | 100 | <- | Plus |
BO17410.5prime Sequence
521 bp (521 high quality bases) assembled on 2006-10-13
> BO17410.5prime
GAAGTTATCAGTCGACATGCTGCGCCAACTACGGTTGACAATGGATATTT
CGGGTTGGATCTTCCTCCCGTGGAGACGCTCCATGTCCAACATGAAGGAC
TCTCCTCCACCGCCACCACCACTGGCCAGCACTTTCAACGACGTGATTGT
GGACTACGAGGACCCGGATTATCTTCCACTGCCGGAGTATCCGGTGCGTC
CAAACGAGCCGTTGGAAACTCGCAAGCAACGGCTTTTGTACCAATCGCGC
AAGCGCGGAATGCTGGAGAACGATCTTCTGCTGAGCACCTTTGCGGCCAA
GCATCTCCAGAACTTCAGCGCCGAGCAGACGGCGCAGTACGACCAGTTGA
TCAACGGGGTCAGCAACGACTGGGATATCTATTACTGGGCCACCGAGGTG
AAGCCCACGCCCAAGGAGTACGACACGGAGATCATGGGGCTGTTGAAGGA
GCACGTCAAGAACGCCGAACGGGTCACGCGACTCCGCCAGCCGGATCTGA
ATATTGCAAGCTTTCTAGACC
BO17410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14757-PA | 492 | CG14757-RA | 1..489 | 17..505 | 2445 | 100 | Plus |
CG12895-PA | 471 | CG12895-RA | 289..347 | 320..378 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14757-RA | 739 | CG14757-RA | 117..605 | 17..505 | 2445 | 100 | Plus |
CG12895-RB | 667 | CG12895-RB | 160..410 | 146..396 | 565 | 82.1 | Plus |
CG12895-RA | 593 | CG12895-RA | 160..410 | 146..396 | 565 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8172498..8172772 | 505..231 | 1375 | 100 | Minus |
2R | 25286936 | 2R | 8173172..8173370 | 232..34 | 995 | 100 | Minus |
2R | 25286936 | 2R | 10436855..10436997 | 396..254 | 415 | 86 | Minus |
Blast to na_te.dros performed 2015-02-10 18:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2226..2298 | 113..41 | 112 | 64.9 | Minus |
BO17410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:43 Download gff for
BO17410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14757-PA | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:59 Download gff for
BO17410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14757-RA | 113..610 | 9..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:19:24 Download gff for
BO17410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14757-RA | 113..610 | 9..511 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:19:24 Download gff for
BO17410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8172493..8172771 | 232..511 | 98 | <- | Minus |
2R | 8173173..8173369 | 35..231 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:59 Download gff for
BO17410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4059998..4060276 | 232..511 | 98 | <- | Minus |
arm_2R | 4060678..4060874 | 35..231 | 100 | <- | Minus |
BO17410.complete Sequence
523 bp assembled on 2006-10-11
GenBank Submission: FJ634111
> BO17410.complete
GAAGTTATCAGTCGACATGCTGCGCCAACTACGGTTGACAATGGATATTT
CGGGTTGGATCTTCCTCCCGTGGAGACGCTCCATGTCCAACATGAAGGAC
TCTCCTCCACCGCCACCACCACTGGCCAGCACTTTCAACGACGTGATTGT
GGACTACGAGGACCCGGATTATCTTCCACTGCCGGAGTATCCGGTGCGTC
CAAACGAGCCGTTGGAAACTCGCAAGCAACGGCTTTTGTACCAATCGCGC
AAGCGCGGAATGCTGGAGAACGATCTTCTGCTGAGCACCTTTGCGGCCAA
GCATCTCCAGAACTTCAGCGCCGAGCAGACGGCGCAGTACGACCAGTTGA
TCAACGGGGTCAGCAACGACTGGGATATCTATTACTGGGCCACCGAGGTG
AAGCCCACGCCCAAGGAGTACGACACGGAGATCATGGGGCTGTTGAAGGA
GCACGTCAAGAACGCCGAACGGGTCACGCGACTCCGCCAGCCGGATCTGA
ATATTGCAAGCTTTCTAGACCAT
BO17410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14757-RA | 492 | CG14757-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
CG12895-RB | 471 | CG12895-PB | 115..365 | 146..396 | 565 | 81.7 | Plus |
CG12895-RA | 471 | CG12895-PA | 115..365 | 146..396 | 565 | 81.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14757-RA | 739 | CG14757-RA | 117..605 | 17..505 | 2445 | 100 | Plus |
CG12895-RB | 667 | CG12895-RB | 160..410 | 146..396 | 565 | 81.7 | Plus |
CG12895-RA | 593 | CG12895-RA | 160..410 | 146..396 | 565 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8172498..8172772 | 505..231 | 1375 | 100 | Minus |
2R | 25286936 | 2R | 8173172..8173370 | 232..34 | 995 | 100 | Minus |
2R | 25286936 | 2R | 10436855..10436997 | 396..254 | 415 | 86 | Minus |
Blast to na_te.dros performed 2014-11-27 16:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2226..2298 | 113..41 | 112 | 64.9 | Minus |
BO17410.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:14 Download gff for
BO17410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14757-RA | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:19 Download gff for
BO17410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14757-RA | 113..610 | 9..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:35 Download gff for
BO17410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14757-RA | 117..605 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:15 Download gff for
BO17410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14757-RA | 113..610 | 9..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:24 Download gff for
BO17410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14757-RA | 117..605 | 17..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:24 Download gff for
BO17410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8172496..8172771 | 232..507 | 99 | <- | Minus |
2R | 8173173..8173369 | 35..231 | 100 | <- | Minus |
2R | 8173480..8173497 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:35 Download gff for
BO17410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4060001..4060276 | 232..507 | 99 | <- | Minus |
arm_2R | 4060678..4060874 | 35..231 | 100 | <- | Minus |
arm_2R | 4060985..4061002 | 17..34 | 100 | | Minus |
BO17410.pep Sequence
Translation from 16 to 523
> BO17410.pep
MLRQLRLTMDISGWIFLPWRRSMSNMKDSPPPPPPLASTFNDVIVDYEDP
DYLPLPEYPVRPNEPLETRKQRLLYQSRKRGMLENDLLLSTFAAKHLQNF
SAEQTAQYDQLINGVSNDWDIYYWATEVKPTPKEYDTEIMGLLKEHVKNA
ERVTRLRQPDLNIASFLDH
BO17410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14757-PA | 163 | CG14757-PA | 1..163 | 1..163 | 872 | 100 | Plus |
CG12895-PB | 156 | CG12895-PB | 39..156 | 44..161 | 536 | 82.2 | Plus |
CG12895-PA | 156 | CG12895-PA | 39..156 | 44..161 | 536 | 82.2 | Plus |