Clone BO17410 Report

Search the DGRC for BO17410

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG14757-RA
Protein status:BO17410.pep:
Sequenced Size:523

Clone Sequence Records

BO17410.3prime Sequence

521 bp (521 high quality bases) assembled on 2006-10-13

> BO17410.3prime
ATGGTCTAGAAAGCTTGCAATATTCAGATCCGGCTGGCGGAGTCGCGTGA
CCCGTTCGGCGTTCTTGACGTGCTCCTTCAACAGCCCCATGATCTCCGTG
TCGTACTCCTTGGGCGTGGGCTTCACCTCGGTGGCCCAGTAATAGATATC
CCAGTCGTTGCTGACCCCGTTGATCAACTGGTCGTACTGCGCCGTCTGCT
CGGCGCTGAAGTTCTGGAGATGCTTGGCCGCAAAGGTGCTCAGCAGAAGA
TCGTTCTCCAGCATTCCGCGCTTGCGCGATTGGTACAAAAGCCGTTGCTT
GCGAGTTTCCAACGGCTCGTTTGGACGCACCGGATACTCCGGCAGTGGAA
GATAATCCGGGTCCTCGTAGTCCACAATCACGTCGTTGAAAGTGCTGGCC
AGTGGTGGTGGCGGTGGAGGAGAGTCCTTCATGTTGGACATGGAGCGTCT
CCACGGGAGGAAGATCCAACCCGAAATATCCATTGTCAACCGTAGTTGGC
GCAGCATGTCGACTGATAACT

BO17410.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-PA 492 CG14757-RA 1..489 507..19 2445 100 Minus
CG12895-PA 471 CG12895-RA 289..347 204..146 145 89.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-RA 739 CG14757-RA 117..605 507..19 2445 100 Minus
CG12895-RB 667 CG12895-RB 160..410 378..128 565 82.1 Minus
CG12895-RA 593 CG12895-RA 160..410 378..128 565 82.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8172498..8172772 19..293 1375 100 Plus
2R 25286936 2R 8173172..8173370 292..490 995 100 Plus
2R 25286936 2R 10436855..10436997 128..270 415 86 Plus
Blast to na_te.dros performed 2015-02-10 21:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2226..2298 411..483 112 64.9 Plus

BO17410.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:42 Download gff for BO17410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-PA 1..492 18..507 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:26 Download gff for BO17410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 113..610 13..515 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:26 Download gff for BO17410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 113..610 13..515 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:26 Download gff for BO17410.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8172493..8172771 13..292 98 <- Plus
2R 8173173..8173369 293..489 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:26 Download gff for BO17410.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4059998..4060276 13..292 98 <- Plus
arm_2R 4060678..4060874 293..489 100 <- Plus

BO17410.5prime Sequence

521 bp (521 high quality bases) assembled on 2006-10-13

> BO17410.5prime
GAAGTTATCAGTCGACATGCTGCGCCAACTACGGTTGACAATGGATATTT
CGGGTTGGATCTTCCTCCCGTGGAGACGCTCCATGTCCAACATGAAGGAC
TCTCCTCCACCGCCACCACCACTGGCCAGCACTTTCAACGACGTGATTGT
GGACTACGAGGACCCGGATTATCTTCCACTGCCGGAGTATCCGGTGCGTC
CAAACGAGCCGTTGGAAACTCGCAAGCAACGGCTTTTGTACCAATCGCGC
AAGCGCGGAATGCTGGAGAACGATCTTCTGCTGAGCACCTTTGCGGCCAA
GCATCTCCAGAACTTCAGCGCCGAGCAGACGGCGCAGTACGACCAGTTGA
TCAACGGGGTCAGCAACGACTGGGATATCTATTACTGGGCCACCGAGGTG
AAGCCCACGCCCAAGGAGTACGACACGGAGATCATGGGGCTGTTGAAGGA
GCACGTCAAGAACGCCGAACGGGTCACGCGACTCCGCCAGCCGGATCTGA
ATATTGCAAGCTTTCTAGACC

BO17410.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-PA 492 CG14757-RA 1..489 17..505 2445 100 Plus
CG12895-PA 471 CG12895-RA 289..347 320..378 145 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-RA 739 CG14757-RA 117..605 17..505 2445 100 Plus
CG12895-RB 667 CG12895-RB 160..410 146..396 565 82.1 Plus
CG12895-RA 593 CG12895-RA 160..410 146..396 565 82.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8172498..8172772 505..231 1375 100 Minus
2R 25286936 2R 8173172..8173370 232..34 995 100 Minus
2R 25286936 2R 10436855..10436997 396..254 415 86 Minus
Blast to na_te.dros performed 2015-02-10 18:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2226..2298 113..41 112 64.9 Minus

BO17410.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:43 Download gff for BO17410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-PA 1..492 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:59 Download gff for BO17410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 113..610 9..511 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:19:24 Download gff for BO17410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 113..610 9..511 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:19:24 Download gff for BO17410.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8172493..8172771 232..511 98 <- Minus
2R 8173173..8173369 35..231 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:59 Download gff for BO17410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4059998..4060276 232..511 98 <- Minus
arm_2R 4060678..4060874 35..231 100 <- Minus

BO17410.complete Sequence

523 bp assembled on 2006-10-11

GenBank Submission: FJ634111

> BO17410.complete
GAAGTTATCAGTCGACATGCTGCGCCAACTACGGTTGACAATGGATATTT
CGGGTTGGATCTTCCTCCCGTGGAGACGCTCCATGTCCAACATGAAGGAC
TCTCCTCCACCGCCACCACCACTGGCCAGCACTTTCAACGACGTGATTGT
GGACTACGAGGACCCGGATTATCTTCCACTGCCGGAGTATCCGGTGCGTC
CAAACGAGCCGTTGGAAACTCGCAAGCAACGGCTTTTGTACCAATCGCGC
AAGCGCGGAATGCTGGAGAACGATCTTCTGCTGAGCACCTTTGCGGCCAA
GCATCTCCAGAACTTCAGCGCCGAGCAGACGGCGCAGTACGACCAGTTGA
TCAACGGGGTCAGCAACGACTGGGATATCTATTACTGGGCCACCGAGGTG
AAGCCCACGCCCAAGGAGTACGACACGGAGATCATGGGGCTGTTGAAGGA
GCACGTCAAGAACGCCGAACGGGTCACGCGACTCCGCCAGCCGGATCTGA
ATATTGCAAGCTTTCTAGACCAT

BO17410.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-RA 492 CG14757-PA 1..489 17..505 2445 100 Plus
CG12895-RB 471 CG12895-PB 115..365 146..396 565 81.7 Plus
CG12895-RA 471 CG12895-PA 115..365 146..396 565 81.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-RA 739 CG14757-RA 117..605 17..505 2445 100 Plus
CG12895-RB 667 CG12895-RB 160..410 146..396 565 81.7 Plus
CG12895-RA 593 CG12895-RA 160..410 146..396 565 81.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8172498..8172772 505..231 1375 100 Minus
2R 25286936 2R 8173172..8173370 232..34 995 100 Minus
2R 25286936 2R 10436855..10436997 396..254 415 86 Minus
Blast to na_te.dros performed 2014-11-27 16:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 2226..2298 113..41 112 64.9 Minus

BO17410.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:14 Download gff for BO17410.complete
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 1..492 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:19 Download gff for BO17410.complete
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 113..610 9..511 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:35 Download gff for BO17410.complete
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 117..605 17..507 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:15 Download gff for BO17410.complete
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 113..610 9..511 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:24 Download gff for BO17410.complete
Subject Subject Range Query Range Percent Splice Strand
CG14757-RA 117..605 17..507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:24 Download gff for BO17410.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8172496..8172771 232..507 99 <- Minus
2R 8173173..8173369 35..231 100 <- Minus
2R 8173480..8173497 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:35 Download gff for BO17410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4060001..4060276 232..507 99 <- Minus
arm_2R 4060678..4060874 35..231 100 <- Minus
arm_2R 4060985..4061002 17..34 100   Minus

BO17410.pep Sequence

Translation from 16 to 523

> BO17410.pep
MLRQLRLTMDISGWIFLPWRRSMSNMKDSPPPPPPLASTFNDVIVDYEDP
DYLPLPEYPVRPNEPLETRKQRLLYQSRKRGMLENDLLLSTFAAKHLQNF
SAEQTAQYDQLINGVSNDWDIYYWATEVKPTPKEYDTEIMGLLKEHVKNA
ERVTRLRQPDLNIASFLDH

BO17410.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14757-PA 163 CG14757-PA 1..163 1..163 872 100 Plus
CG12895-PB 156 CG12895-PB 39..156 44..161 536 82.2 Plus
CG12895-PA 156 CG12895-PA 39..156 44..161 536 82.2 Plus