Clone BO17421 Report

Search the DGRC for BO17421

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG30488-RA
Protein status:BO17421.pep: validated full length
Sequenced Size:829

Clone Sequence Records

BO17421.5prime Sequence

756 bp (695 high quality bases) assembled on 2006-10-13

> BO17421.5prime
GAAGTTATCAGTCGACATGAAGATGTGGTATCTGTACCTCTTTTTGTTAC
CGCTAACTGCGAGCTTGATACCAGAAGATGATCCCCATTGTAAGCCCAAT
CTCTGCATGAACTCGGAAATTCATGCAGTAGGTGAGCAATGCGGGAAAAA
CAATCTGTTCCTGAACGTTAATGGAGCCTTGAAGACTGGCATCCTCAGCA
GGATCAACATGTTGCGCAACTATGTGGCCAGTGGAGTGGGCAACTATTCG
GTAGCCGCTCGCATGCCGACGATGGGCTGGGATTTTGAACTGCAGAGGCT
GGCGGATAGACAGGTTCGCCAATGCGATGAGACGGGAAAGTTTTGCGCCA
ATACCGACAAGTATCACTATGTGGCAACCACCGAAATCCGTAGCAAGATG
GGACGGACCAAGAGCCTTAAAAGTGCGATTTTAGATAAATTGCTGCCGGA
GTTGTTTCTGGATGTCATGGGATGCATGATGAACAGTCAGAAATTAGTGC
CAGTAAGAGAAGGAACCTGTGTGGGCCACTATATGCCCCTGATTCAGGAC
CATGGTTCTCGTATGGGATGCGGCCTTCGTGTGAAAGGTAGGGACGAGAA
GGAGTCAAATATTATCCTGCTCTGCCACTTTTCGCGGGCCAGTGTGAACA
ACCTGGTTCCGTACGAAGAGGGCCAGATTCCTGCCGGGAAGTGCGCCACT
GGACCGAGCCAGATGTACCAGTTCCTCTGCAGCGAGGATGAGTACGTCGA
TGCCAA

BO17421.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG30488-PA 798 CG30488-RA 1..740 17..756 3700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
antr-RA 896 CG30488-RA 4..747 13..756 3705 99.9 Plus
antr-RB 917 CG30488-RB 4..768 13..756 3485 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12847428..12847816 513..125 1945 100 Minus
2R 25286936 2R 12846997..12847240 756..513 1220 100 Minus
2R 25286936 2R 12847889..12848001 125..13 550 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 17:26:53 has no hits.

BO17421.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:49 Download gff for BO17421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30488-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:51 Download gff for BO17421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30488-RA 4..745 13..754 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:40 Download gff for BO17421.5prime
Subject Subject Range Query Range Percent Splice Strand
antr-RA 4..745 13..754 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:40 Download gff for BO17421.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12846999..12847239 514..754 100 <- Minus
2R 12847428..12847816 125..513 100 <- Minus
2R 12847890..12848007 5..124 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:51 Download gff for BO17421.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8734504..8734744 514..754 100 <- Minus
arm_2R 8734933..8735321 125..513 100 <- Minus
arm_2R 8735395..8735512 5..124 95   Minus

BO17421.3prime Sequence

827 bp (726 high quality bases) assembled on 2006-10-13

> BO17421.3prime
ATGGTCTAGAAAGCTTGCAATGTCCACTTGTATTTGGTCGCTGGACGGCA
TATTCGATTCCACCACCATGCTGTTGGCATCGACGTACTCATCCTCGCTG
CAGAGGAACTGGTACATCTGGCTCGGTCCAGTGGCGCACTTCCCGGCAGG
AATCTGGCCCTCTTCGTACGGAACCAGGTTGTTCACACTGGCCCGCGAAA
AGTGGCAGAGCAGGATAATATTTGACTCCTTCTCGTCCCTACCTTTCACA
CGAAGGCCGCATCCCATACGAGAACCATGGTCCTGAATCAGGGGCATATA
GTGGCCCACACAGGTTCCTTCTCTTACTGGCACTAATTTCTGACTGTTCA
TCATGCATCCCATGACATCCAGAAACAACTCCGGCAGCAATTTATCTAAA
ATCGCACTTTTAAGGCTCTTGGTCCGTCCCATCTTGCTACGGATTTCGGT
GGTTGCCACATAGTGATACTTGTCGGTATTGGCGCAAAACTTTCCCGTCT
CATCGCATTGGCGAACCTGTCTATCCGCCAGCCTCTGCAGTTCAAAATCC
CAGCCCATCGTCGGCATGCGAGCGGCTACCGAATAGTTGCCCACTCCACT
GGCCACATAGTTGCGCAACATGTTGATCCTGCTGAGGATGCCAGTCTTCA
AGGCTCCATTAACGTTCAGGAACAGATTGTTTTTCCCGCATTGCTCACCT
ACTGCATGAATTTCCGAGTTCATGCAGAGATTGGGCTTACAATGGGGATC
ATCTTCTGGTATCAAGCTCGCAGTTAGCGGTAACAAAAAAAAGGACAGAT
ACCACATCTTCATGTCGACTGATAACT

BO17421.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG30488-PA 798 CG30488-RA 1..795 813..19 3900 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
antr-RA 896 CG30488-RA 4..802 817..19 3935 99.5 Minus
antr-RB 917 CG30488-RB 4..823 817..19 3715 97 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12847428..12847816 317..705 1945 100 Plus
2R 25286936 2R 12846942..12847240 19..317 1495 100 Plus
2R 25286936 2R 12847889..12848001 705..817 505 96.5 Plus
Blast to na_te.dros performed on 2015-02-10 21:52:29 has no hits.

BO17421.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:48 Download gff for BO17421.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30488-PA 1..798 18..813 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:30 Download gff for BO17421.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30488-RA 4..802 19..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:11 Download gff for BO17421.3prime
Subject Subject Range Query Range Percent Splice Strand
antr-RA 4..802 19..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:11 Download gff for BO17421.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12846942..12847239 19..316 100 <- Plus
2R 12847428..12847816 317..705 100 <- Plus
2R 12847890..12848007 706..825 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:30 Download gff for BO17421.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8734447..8734744 19..316 100 <- Plus
arm_2R 8734933..8735321 317..705 100 <- Plus
arm_2R 8735395..8735512 706..825 93   Plus

BO17421.complete Sequence

829 bp assembled on 2006-10-11

GenBank Submission: FJ634112

> BO17421.complete
GAAGTTATCAGTCGACATGAAGATGTGGTATCTGTACCTCTTTTTGTTAC
CGCTAACTGCGAGCTTGATACCAGAAGATGATCCCCATTGTAAGCCCAAT
CTCTGCATGAACTCGGAAATTCATGCAGTAGGTGAGCAATGCGGGAAAAA
CAATCTGTTCCTGAACGTTAATGGAGCCTTGAAGACTGGCATCCTCAGCA
GGATCAACATGTTGCGCAACTATGTGGCCAGTGGAGTGGGCAACTATTCG
GTAGCCGCTCGCATGCCGACGATGGGCTGGGATTTTGAACTGCAGAGGCT
GGCGGATAGACAGGTTCGCCAATGCGATGAGACGGGAAAGTTTTGCGCCA
ATACCGACAAGTATCACTATGTGGCAACCACCGAAATCCGTAGCAAGATG
GGACGGACCAAGAGCCTTAAAAGTGCGATTTTAGATAAATTGCTGCCGGA
GTTGTTTCTGGATGTCATGGGATGCATGATGAACAGTCAGAAATTAGTGC
CAGTAAGAGAAGGAACCTGTGTGGGCCACTATATGCCCCTGATTCAGGAC
CATGGTTCTCGTATGGGATGCGGCCTTCGTGTGAAAGGTAGGGACGAGAA
GGAGTCAAATATTATCCTGCTCTGCCACTTTTCGCGGGCCAGTGTGAACA
ACCTGGTTCCGTACGAAGAGGGCCAGATTCCTGCCGGGAAGTGCGCCACT
GGACCGAGCCAGATGTACCAGTTCCTCTGCAGCGAGGATGAGTACGTCGA
TGCCAACAGCATGGTGGTGGAATCGAATATGCCGTCCAGCGACCAAATAC
AAGTGGACATTGCAAGCTTTCTAGACCAT

BO17421.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
antr-RA 798 CG30488-PA 1..795 17..811 3975 100 Plus
antr-RB 819 CG30488-PB 1..816 17..811 3730 97.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
antr-RA 896 CG30488-RA 4..802 13..811 3980 99.9 Plus
antr-RB 917 CG30488-RB 4..823 13..811 3735 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12847428..12847816 513..125 1945 100 Minus
2R 25286936 2R 12846942..12847240 811..513 1495 100 Minus
2R 25286936 2R 12847889..12848001 125..13 550 99.1 Minus
Blast to na_te.dros performed on 2014-11-27 14:50:09 has no hits.

BO17421.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:03 Download gff for BO17421.complete
Subject Subject Range Query Range Percent Splice Strand
CG30488-RA 1..798 17..812 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:47 Download gff for BO17421.complete
Subject Subject Range Query Range Percent Splice Strand
CG30488-RA 12..816 5..811 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:34 Download gff for BO17421.complete
Subject Subject Range Query Range Percent Splice Strand
CG30488-RA 8..802 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:03 Download gff for BO17421.complete
Subject Subject Range Query Range Percent Splice Strand
CG30488-RA 12..816 5..811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:46 Download gff for BO17421.complete
Subject Subject Range Query Range Percent Splice Strand
antr-RA 8..802 17..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:46 Download gff for BO17421.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12846940..12847239 514..813 99 <- Minus
2R 12847428..12847816 125..513 100 <- Minus
2R 12847890..12847997 17..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:34 Download gff for BO17421.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8734445..8734744 514..813 99 <- Minus
arm_2R 8734933..8735321 125..513 100 <- Minus
arm_2R 8735395..8735502 17..124 100   Minus

BO17421.pep Sequence

Translation from 16 to 829

> BO17421.pep
MKMWYLYLFLLPLTASLIPEDDPHCKPNLCMNSEIHAVGEQCGKNNLFLN
VNGALKTGILSRINMLRNYVASGVGNYSVAARMPTMGWDFELQRLADRQV
RQCDETGKFCANTDKYHYVATTEIRSKMGRTKSLKSAILDKLLPELFLDV
MGCMMNSQKLVPVREGTCVGHYMPLIQDHGSRMGCGLRVKGRDEKESNII
LLCHFSRASVNNLVPYEEGQIPAGKCATGPSQMYQFLCSEDEYVDANSMV
VESNMPSSDQIQVDIASFLDH

BO17421.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
antr-PA 265 CG30488-PA 1..265 1..265 1409 100 Plus
antr-PB 272 CG30488-PB 1..272 1..265 1391 97.4 Plus
CG30486-PA 263 CG30486-PA 1..257 3..249 305 29.7 Plus
CG30486-PB 219 CG30486-PB 3..213 42..249 287 31.5 Plus
CG3640-PA 296 CG3640-PA 4..255 1..249 210 25 Plus