Clone Sequence Records
BO17421.5prime Sequence
756 bp (695 high quality bases) assembled on 2006-10-13
> BO17421.5prime
GAAGTTATCAGTCGACATGAAGATGTGGTATCTGTACCTCTTTTTGTTAC
CGCTAACTGCGAGCTTGATACCAGAAGATGATCCCCATTGTAAGCCCAAT
CTCTGCATGAACTCGGAAATTCATGCAGTAGGTGAGCAATGCGGGAAAAA
CAATCTGTTCCTGAACGTTAATGGAGCCTTGAAGACTGGCATCCTCAGCA
GGATCAACATGTTGCGCAACTATGTGGCCAGTGGAGTGGGCAACTATTCG
GTAGCCGCTCGCATGCCGACGATGGGCTGGGATTTTGAACTGCAGAGGCT
GGCGGATAGACAGGTTCGCCAATGCGATGAGACGGGAAAGTTTTGCGCCA
ATACCGACAAGTATCACTATGTGGCAACCACCGAAATCCGTAGCAAGATG
GGACGGACCAAGAGCCTTAAAAGTGCGATTTTAGATAAATTGCTGCCGGA
GTTGTTTCTGGATGTCATGGGATGCATGATGAACAGTCAGAAATTAGTGC
CAGTAAGAGAAGGAACCTGTGTGGGCCACTATATGCCCCTGATTCAGGAC
CATGGTTCTCGTATGGGATGCGGCCTTCGTGTGAAAGGTAGGGACGAGAA
GGAGTCAAATATTATCCTGCTCTGCCACTTTTCGCGGGCCAGTGTGAACA
ACCTGGTTCCGTACGAAGAGGGCCAGATTCCTGCCGGGAAGTGCGCCACT
GGACCGAGCCAGATGTACCAGTTCCTCTGCAGCGAGGATGAGTACGTCGA
TGCCAA
BO17421.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30488-PA | 798 | CG30488-RA | 1..740 | 17..756 | 3700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
antr-RA | 896 | CG30488-RA | 4..747 | 13..756 | 3705 | 99.9 | Plus |
antr-RB | 917 | CG30488-RB | 4..768 | 13..756 | 3485 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12847428..12847816 | 513..125 | 1945 | 100 | Minus |
2R | 25286936 | 2R | 12846997..12847240 | 756..513 | 1220 | 100 | Minus |
2R | 25286936 | 2R | 12847889..12848001 | 125..13 | 550 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:26:53 has no hits.
BO17421.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:49 Download gff for
BO17421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:51 Download gff for
BO17421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-RA | 4..745 | 13..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:40 Download gff for
BO17421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
antr-RA | 4..745 | 13..754 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:40 Download gff for
BO17421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12846999..12847239 | 514..754 | 100 | <- | Minus |
2R | 12847428..12847816 | 125..513 | 100 | <- | Minus |
2R | 12847890..12848007 | 5..124 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:51 Download gff for
BO17421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8734504..8734744 | 514..754 | 100 | <- | Minus |
arm_2R | 8734933..8735321 | 125..513 | 100 | <- | Minus |
arm_2R | 8735395..8735512 | 5..124 | 95 | | Minus |
BO17421.3prime Sequence
827 bp (726 high quality bases) assembled on 2006-10-13
> BO17421.3prime
ATGGTCTAGAAAGCTTGCAATGTCCACTTGTATTTGGTCGCTGGACGGCA
TATTCGATTCCACCACCATGCTGTTGGCATCGACGTACTCATCCTCGCTG
CAGAGGAACTGGTACATCTGGCTCGGTCCAGTGGCGCACTTCCCGGCAGG
AATCTGGCCCTCTTCGTACGGAACCAGGTTGTTCACACTGGCCCGCGAAA
AGTGGCAGAGCAGGATAATATTTGACTCCTTCTCGTCCCTACCTTTCACA
CGAAGGCCGCATCCCATACGAGAACCATGGTCCTGAATCAGGGGCATATA
GTGGCCCACACAGGTTCCTTCTCTTACTGGCACTAATTTCTGACTGTTCA
TCATGCATCCCATGACATCCAGAAACAACTCCGGCAGCAATTTATCTAAA
ATCGCACTTTTAAGGCTCTTGGTCCGTCCCATCTTGCTACGGATTTCGGT
GGTTGCCACATAGTGATACTTGTCGGTATTGGCGCAAAACTTTCCCGTCT
CATCGCATTGGCGAACCTGTCTATCCGCCAGCCTCTGCAGTTCAAAATCC
CAGCCCATCGTCGGCATGCGAGCGGCTACCGAATAGTTGCCCACTCCACT
GGCCACATAGTTGCGCAACATGTTGATCCTGCTGAGGATGCCAGTCTTCA
AGGCTCCATTAACGTTCAGGAACAGATTGTTTTTCCCGCATTGCTCACCT
ACTGCATGAATTTCCGAGTTCATGCAGAGATTGGGCTTACAATGGGGATC
ATCTTCTGGTATCAAGCTCGCAGTTAGCGGTAACAAAAAAAAGGACAGAT
ACCACATCTTCATGTCGACTGATAACT
BO17421.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30488-PA | 798 | CG30488-RA | 1..795 | 813..19 | 3900 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
antr-RA | 896 | CG30488-RA | 4..802 | 817..19 | 3935 | 99.5 | Minus |
antr-RB | 917 | CG30488-RB | 4..823 | 817..19 | 3715 | 97 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12847428..12847816 | 317..705 | 1945 | 100 | Plus |
2R | 25286936 | 2R | 12846942..12847240 | 19..317 | 1495 | 100 | Plus |
2R | 25286936 | 2R | 12847889..12848001 | 705..817 | 505 | 96.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:52:29 has no hits.
BO17421.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:48 Download gff for
BO17421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-PA | 1..798 | 18..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:30 Download gff for
BO17421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-RA | 4..802 | 19..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:11 Download gff for
BO17421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
antr-RA | 4..802 | 19..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:11 Download gff for
BO17421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12846942..12847239 | 19..316 | 100 | <- | Plus |
2R | 12847428..12847816 | 317..705 | 100 | <- | Plus |
2R | 12847890..12848007 | 706..825 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:30 Download gff for
BO17421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8734447..8734744 | 19..316 | 100 | <- | Plus |
arm_2R | 8734933..8735321 | 317..705 | 100 | <- | Plus |
arm_2R | 8735395..8735512 | 706..825 | 93 | | Plus |
BO17421.complete Sequence
829 bp assembled on 2006-10-11
GenBank Submission: FJ634112
> BO17421.complete
GAAGTTATCAGTCGACATGAAGATGTGGTATCTGTACCTCTTTTTGTTAC
CGCTAACTGCGAGCTTGATACCAGAAGATGATCCCCATTGTAAGCCCAAT
CTCTGCATGAACTCGGAAATTCATGCAGTAGGTGAGCAATGCGGGAAAAA
CAATCTGTTCCTGAACGTTAATGGAGCCTTGAAGACTGGCATCCTCAGCA
GGATCAACATGTTGCGCAACTATGTGGCCAGTGGAGTGGGCAACTATTCG
GTAGCCGCTCGCATGCCGACGATGGGCTGGGATTTTGAACTGCAGAGGCT
GGCGGATAGACAGGTTCGCCAATGCGATGAGACGGGAAAGTTTTGCGCCA
ATACCGACAAGTATCACTATGTGGCAACCACCGAAATCCGTAGCAAGATG
GGACGGACCAAGAGCCTTAAAAGTGCGATTTTAGATAAATTGCTGCCGGA
GTTGTTTCTGGATGTCATGGGATGCATGATGAACAGTCAGAAATTAGTGC
CAGTAAGAGAAGGAACCTGTGTGGGCCACTATATGCCCCTGATTCAGGAC
CATGGTTCTCGTATGGGATGCGGCCTTCGTGTGAAAGGTAGGGACGAGAA
GGAGTCAAATATTATCCTGCTCTGCCACTTTTCGCGGGCCAGTGTGAACA
ACCTGGTTCCGTACGAAGAGGGCCAGATTCCTGCCGGGAAGTGCGCCACT
GGACCGAGCCAGATGTACCAGTTCCTCTGCAGCGAGGATGAGTACGTCGA
TGCCAACAGCATGGTGGTGGAATCGAATATGCCGTCCAGCGACCAAATAC
AAGTGGACATTGCAAGCTTTCTAGACCAT
BO17421.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
antr-RA | 798 | CG30488-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
antr-RB | 819 | CG30488-PB | 1..816 | 17..811 | 3730 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
antr-RA | 896 | CG30488-RA | 4..802 | 13..811 | 3980 | 99.9 | Plus |
antr-RB | 917 | CG30488-RB | 4..823 | 13..811 | 3735 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12847428..12847816 | 513..125 | 1945 | 100 | Minus |
2R | 25286936 | 2R | 12846942..12847240 | 811..513 | 1495 | 100 | Minus |
2R | 25286936 | 2R | 12847889..12848001 | 125..13 | 550 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:50:09 has no hits.
BO17421.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:03 Download gff for
BO17421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-RA | 1..798 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:47 Download gff for
BO17421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-RA | 12..816 | 5..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:34 Download gff for
BO17421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-RA | 8..802 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:03 Download gff for
BO17421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-RA | 12..816 | 5..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:46 Download gff for
BO17421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
antr-RA | 8..802 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:46 Download gff for
BO17421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12846940..12847239 | 514..813 | 99 | <- | Minus |
2R | 12847428..12847816 | 125..513 | 100 | <- | Minus |
2R | 12847890..12847997 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:34 Download gff for
BO17421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8734445..8734744 | 514..813 | 99 | <- | Minus |
arm_2R | 8734933..8735321 | 125..513 | 100 | <- | Minus |
arm_2R | 8735395..8735502 | 17..124 | 100 | | Minus |
BO17421.pep Sequence
Translation from 16 to 829
> BO17421.pep
MKMWYLYLFLLPLTASLIPEDDPHCKPNLCMNSEIHAVGEQCGKNNLFLN
VNGALKTGILSRINMLRNYVASGVGNYSVAARMPTMGWDFELQRLADRQV
RQCDETGKFCANTDKYHYVATTEIRSKMGRTKSLKSAILDKLLPELFLDV
MGCMMNSQKLVPVREGTCVGHYMPLIQDHGSRMGCGLRVKGRDEKESNII
LLCHFSRASVNNLVPYEEGQIPAGKCATGPSQMYQFLCSEDEYVDANSMV
VESNMPSSDQIQVDIASFLDH
BO17421.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
antr-PA | 265 | CG30488-PA | 1..265 | 1..265 | 1409 | 100 | Plus |
antr-PB | 272 | CG30488-PB | 1..272 | 1..265 | 1391 | 97.4 | Plus |
CG30486-PA | 263 | CG30486-PA | 1..257 | 3..249 | 305 | 29.7 | Plus |
CG30486-PB | 219 | CG30486-PB | 3..213 | 42..249 | 287 | 31.5 | Plus |
CG3640-PA | 296 | CG3640-PA | 4..255 | 1..249 | 210 | 25 | Plus |