Clone Sequence Records
BO17427.3prime Sequence
865 bp (754 high quality bases) assembled on 2006-10-13
> BO17427.3prime
ATGGTCTAGAAAGCTTGCCGTCTCGTAGATGCGCACCAGGTCGTCCAGAC
TGATGGGATAGTGGGTGACCGGGCAGGTGCCGTGCTCCTTCATGTGGCTA
ACGATGCACTTCCAGCAAAAGACGTAGCCGGAAACGGAGCAGGCAGTGGG
CGTCTGGATGGACAGCAGGCAGACTGGGCACTCTCCCCGCTGGGGAAGGC
TCTGCTGCACTTCCTTGGGCAGCTGCTTTCTCGGCATCGCTTCGGGATTT
ATCAGAGTTCCACCCACTTTCCGCCGCTGGTCGTTGGAGTACCACCACTG
GACGAACTGCAGGAAGAAGGCCAAGACCTCCAGCATCTTTAGGACCACGT
AGGTCCACTGATCCTCTTTGGGAGGTTCGCTGGGATAGCGAAGGGTCAGC
CCCAACAATCTGAAGATGGGCGAGTGGTTTGAGGCGTACTTTACGAGGTA
AAAGAATGTGTGCGCCGCCTTGGCGGCATGGAAAGCATGGAATGCGCTTA
GAAGGCGTTGCTCCCAGGGACTGGTGTCCTCGTGCCTGGTGATCCTGGTC
CTTAGCTTCCGCTCCACGTAAGGCATGAAGGTTAGCAGTGTGGCAGAGGC
GAACTGCTGCCTGCGGTTCAGCAGATCCCCAGTGGTTGTGACCGTCCTTT
GCAATCCGTAAAAGCTCTCACCGAAAGAGGAGGCCCTCTTGCGCAGATAC
AGGTACTGCAGCAGCCAAGTCAGCAATGGCGACAGCTCCTCCTGAATCCT
CAAACTCCCCCATAGTTTAAAGTCCAGGCGTAGTCCAAAGTAGTCGAATA
TCTTGCTCAATGCCGGGTAAATCAAGGTGTCCAGCGTCTCTGACGCTGAA
ATTTCCAAAATCGAC
BO17427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3639-PA | 894 | CG3639-RA | 55..891 | 855..19 | 4110 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex12-RB | 2104 | CG3639-RB | 135..981 | 865..19 | 4160 | 99.4 | Minus |
| Pex12-RA | 1040 | CG3639-RA | 135..981 | 865..19 | 4160 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 816127..816973 | 865..19 | 4160 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:17:23 has no hits.
BO17427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:57 Download gff for
BO17427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3639-PA | 45..894 | 15..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:30 Download gff for
BO17427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex12-RA | 135..988 | 10..865 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:08 Download gff for
BO17427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex12-RA | 135..988 | 10..865 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:08 Download gff for
BO17427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 816127..816980 | 10..865 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:30 Download gff for
BO17427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 816127..816980 | 10..865 | 98 | | Minus |
BO17427.5prime Sequence
895 bp (771 high quality bases) assembled on 2006-10-13
> BO17427.5prime
GAAGTTATCAGTCGACATGGCAGAAGCGGCAAATGTGCGCCAGAACCTTC
AAAATGTGCCGTCGATCTTCGAAATTTCAGCGTCAGAGACGCTGGACAAC
CTGATTTACCCGGCACTGAGCAAGATATTCGACTACTTTGGACTACGCCT
GGACTTTAAACTATGGGGGAGTTTGAGGATTCAGGAGGAGCTGTCGCCAT
TGCTGACTTGGCTGCTGCAGTACCTGTATCTGCGCAAGAGGGCCTCCTCT
TTCGGTGAGAGCTTTTACGGATTGCAAAGGACGGTCACAACCACTGGGGA
TCTGCTGAACCGCAGGCAGCAGTTCGCCTCTGCCACACTGCTAACCTTCA
TGCCTTACGTGGAGCGGAAGCTAAGGACCAGGATCACCAGGCACGAGGAC
ACCAGTCCCTGGGAGCAACGCCTTCTAAGCGCATTCCATGCTTTCCATGC
CGCCAAGGCGGCGCACACATTCTTTTACCTCGTAAAGTACGCCTCAAACC
ACTCGCCCATCTTCAGATTGTTGGGGCTGACCCTTCGCTATCCCAGCGAA
CCTCCCAAAGAGGATCAGTGGACCTACGTGGTCCTAAAGATGCTGGAGGT
CTTGGCCTTCTTCCTGCAGTTCGTCCAGTGGTGGTACTCCAACGACCAGC
GGCGGAAAGTGGGTGGAACTCTGATAAATCCCGAAGCGATGCCGAGAAAG
CAGCTGCCCAAGGAAGTGCAGCAGAGCCTTCCCCAGCGGGGAGAGTGCCC
AGTCTGCCTGCTGTCCATCCAGACGCCCACTGCCTGCTCCGTTTCCGGCT
ACGTCTTTTGCTGGAAGTGCATCGTTAGCCACATGAAAGAGCACGGCACC
TGCCCGGTCACCCACTTTCCCTCAGTCTGGACGACCTGGGGCGCA
BO17427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3639-PA | 894 | CG3639-RA | 1..850 | 17..866 | 4225 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex12-RB | 2104 | CG3639-RB | 91..970 | 17..895 | 4330 | 99.5 | Plus |
| Pex12-RA | 1040 | CG3639-RA | 91..970 | 17..895 | 4330 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 816083..816962 | 17..895 | 4305 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:38:26 has no hits.
BO17427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:58 Download gff for
BO17427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3639-PA | 1..879 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:44 Download gff for
BO17427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex12-RA | 87..969 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:59 Download gff for
BO17427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex12-RA | 87..969 | 9..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:59 Download gff for
BO17427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 816079..816961 | 9..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:44 Download gff for
BO17427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 816079..816961 | 9..894 | 99 | | Plus |
BO17427.complete Sequence
925 bp assembled on 2006-10-11
GenBank Submission: FJ634113
> BO17427.complete
GAAGTTATCAGTCGACATGGCAGAAGCGGCAAATGTGCGCCAGAACCTTC
AAAATGTGCCGTCGATCTTCGAAATTTCAGCGTCAGAGACGCTGGACAAC
CTGATTTACCCGGCACTGAGCAAGATATTCGACTACTTTGGACTACGCCT
GGACTTTAAACTATGGGGGAGTTTGAGGATTCAGGAGGAGCTGTCGCCAT
TGCTGACTTGGCTGCTGCAGTACCTGTATCTGCGCAAGAGGGCCTCCTCT
TTCGGTGAGAGCTTTTACGGATTGCAAAGGACGGTCACAACCACTGGGGA
TCTGCTGAACCGCAGGCAGCAGTTCGCCTCTGCCACACTGCTAACCTTCA
TGCCTTACGTGGAGCGGAAGCTAAGGACCAGGATCACCAGGCACGAGGAC
ACCAGTCCCTGGGAGCAACGCCTTCTAAGCGCATTCCATGCTTTCCATGC
CGCCAAGGCGGCGCACACATTCTTTTACCTCGTAAAGTACGCCTCAAACC
ACTCGCCCATCTTCAGATTGTTGGGGCTGACCCTTCGCTATCCCAGCGAA
CCTCCCAAAGAGGATCAGTGGACCTACGTGGTCCTAAAGATGCTGGAGGT
CTTGGCCTTCTTCCTGCAGTTCGTCCAGTGGTGGTACTCCAACGACCAGC
GGCGGAAAGTGGGTGGAACTCTGATAAATCCCGAAGCGATGCCGAGAAAG
CAGCTGCCCAAGGAAGTGCAGCAGAGCCTTCCCCAGCGGGGAGAGTGCCC
AGTCTGCCTGCTGTCCATCCAGACGCCCACTGCCTGCTCCGTTTCCGGCT
ACGTCTTTTGCTGGAAGTGCATCGTTAGCCACATGAAGGAGCACGGCACC
TGCCCGGTCACCCACTATCCCATCAGTCTGGACGACCTGGTGCGCATCTA
CGAGACGGCAAGCTTTCTAGACCAT
BO17427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex12-RB | 894 | CG3639-PB | 1..891 | 17..907 | 4455 | 100 | Plus |
| Pex12-RA | 894 | CG3639-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex12-RB | 2104 | CG3639-RB | 91..981 | 17..907 | 4455 | 100 | Plus |
| Pex12-RA | 1040 | CG3639-RA | 91..981 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 816083..816973 | 17..907 | 4455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:45:49 has no hits.
BO17427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:52 Download gff for
BO17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3639-RA | 1..894 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:51 Download gff for
BO17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3639-RA | 1..894 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:00 Download gff for
BO17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex12-RA | 91..981 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:52 Download gff for
BO17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3639-RA | 1..894 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:16 Download gff for
BO17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex12-RA | 91..981 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:16 Download gff for
BO17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 816083..816973 | 17..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:00 Download gff for
BO17427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 816083..816973 | 17..909 | 99 | | Plus |
BO17427.pep Sequence
Translation from 16 to 925
> BO17427.pep
MAEAANVRQNLQNVPSIFEISASETLDNLIYPALSKIFDYFGLRLDFKLW
GSLRIQEELSPLLTWLLQYLYLRKRASSFGESFYGLQRTVTTTGDLLNRR
QQFASATLLTFMPYVERKLRTRITRHEDTSPWEQRLLSAFHAFHAAKAAH
TFFYLVKYASNHSPIFRLLGLTLRYPSEPPKEDQWTYVVLKMLEVLAFFL
QFVQWWYSNDQRRKVGGTLINPEAMPRKQLPKEVQQSLPQRGECPVCLLS
IQTPTACSVSGYVFCWKCIVSHMKEHGTCPVTHYPISLDDLVRIYETASF
LDH
BO17427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex12-PB | 297 | CG3639-PB | 1..297 | 1..297 | 1574 | 100 | Plus |
| Pex12-PA | 297 | CG3639-PA | 1..297 | 1..297 | 1574 | 100 | Plus |
