Clone Sequence Records
BO17428.3prime Sequence
874 bp (809 high quality bases) assembled on 2006-10-13
> BO17428.3prime
ATGGTCTAGAAAGCTTGCGCGTCCTGCAGTTGTTACTTTGCTGGGAAGAG
GACCTGTCGAACGTTTAAGGACTATTTTGAAGTTCTCACTAACCGTGTAG
TCCTCTTTAAATACAACAATCAGATTAAGTTCAAACTCGATTTTGAAGTT
CTTCGTGAGCAACGTAGGGCAGGTGAACAATCTGGGCAGGACCATATGGA
TGGGTAGTTCTAGCTTCGGCAGTACATTGCCGTCGGCTATTTGAATGGTC
TGGATTTCGGTGGCATCCTTGGAGTACCCCTCGTCGCAACCGCAGGTTTC
CACACGAACCAATTGCATCTCAATGGACTTAATGGCCGCCTCCGTGTGTT
GCACCGTAATGCTGCCAGTAATCGGAGTTGTTACGCAGAATTCACTCCGG
TCCAGGCGCCCAGTTATAAGGAATCTCGGCATGGAAAGTCTCTCCTTGGC
GCTGGCATTCTTCTGCAGTGAGTCCGGACTCAAACTAAAAGGAACCACTT
TCTTTGAATCCTCGCTTAGAGGCACCGGTTTGTATTGCACGCAGAACTGC
TGGATTTTGGTCGTGGCTTTGCCAAGAAAATTCCTTTTTACAGTGCAAGT
GAGTTGGTAATTCACGTTAATGAATACTCCGTGGTATGTTTCATATAGAA
TTCGCGGTTCCTTTTTGCACACCAAAGGCAGTTCGAAATGGAACTCCGAA
CGGCCGGCGCTCAGTTTTCCGGGCGCAGATAACTCCAGGCTATTCTGCAG
CAGATTAATAGGTTTCACCGAGTTATAGAAAGCATCGAAAAGCCCAACGG
TCTTAGCACTAAGTTGCAGATTAACGATTCCCTCCAGATACAATATAATT
CCTTCGTGTTTTGTCTCCTGGGCG
BO17428.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-PA | 888 | CG4074-RA | 30..885 | 874..19 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-RB | 1157 | CG4074-RB | 99..954 | 874..19 | 4280 | 100 | Minus |
CG4074-RA | 1022 | CG4074-RA | 99..954 | 874..19 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20768593..20769329 | 138..874 | 3685 | 100 | Plus |
3L | 28110227 | 3L | 20768410..20768529 | 19..138 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:22:39 has no hits.
BO17428.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:59 Download gff for
BO17428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-PA | 30..888 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:13 Download gff for
BO17428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 99..957 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:21 Download gff for
BO17428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 99..957 | 15..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:21 Download gff for
BO17428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20768406..20768528 | 15..137 | 98 | <- | Plus |
3L | 20768593..20769329 | 138..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:13 Download gff for
BO17428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20761506..20761628 | 15..137 | 98 | <- | Plus |
arm_3L | 20761693..20762429 | 138..874 | 100 | | Plus |
BO17428.5prime Sequence
866 bp (832 high quality bases) assembled on 2006-10-13
> BO17428.5prime
GAAGTTATCAGTCGACATGCTGTTGGGCTGCGTGCAGTTTCAGTGCGCCC
AGGAGACAAAACACGAAGGAATTATATTGTATCTGGAGGGAATCGTTAAT
CTGCAACTTAGTGCTAAGACCGTTGGGCTTTTCGATGCTTTCTATAACTC
GGTGAAACCTATTAATCTGCTGCAGAATAGCCTGGAGTTATCTGCGCCCG
GAAAACTGAGCGCCGGCCGTTCGGAGTTCCATTTCGAACTGCCTTTGGTG
TGCAAAAAGGAACCGCGAATTCTATATGAAACATACCACGGAGTATTCAT
TAACGTGAATTACCAACTCACTTGCACTGTAAAAAGGAATTTTCTTGGCA
AAGCCACGACCAAAATCCAGCAGTTCTGCGTGCAATACAAACCGGTGCCT
CTAAGCGAGGATTCAAAGAAAGTGGTTCCTTTTAGTTTGAGTCCGGACTC
ACTGCAGAAGAATGCCAGCGCCAAGGAGAGACTTTCCATGCCGAGATTCC
TTATAACTGGGCGCCTGGACCGGAGTGAATTCTGCGTAACAACTCCGATT
ACTGGCAGCATTACGGTGCAACACACGGAGGCGGCCATTAAGTCCATTGA
GATGCAATTGGTTCGTGTGGAAACCTGCGGTTGCGACGAGGGGTACTCCA
AGGATGCCACCGAAATCCAGACCATTCAAATAGCCGACGGCAATGTACTG
CCGAAGCTAGAACTACCCATCCATATGGTCCTGCCCAGATTGTTCACCTG
CCCTACGTTGCTCACGAAGAACTTCAAAATCGAGTTTGAACTTAATCTGA
TTGTTGTATTTAAAGAGGACTACACGGTTAGTGAGAACTTCAAAATAGTC
CTTTAACGTTCGACAG
BO17428.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-PA | 888 | CG4074-RA | 1..850 | 17..866 | 4225 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-RB | 1157 | CG4074-RB | 67..919 | 14..866 | 4250 | 99.9 | Plus |
CG4074-RA | 1022 | CG4074-RA | 67..919 | 14..866 | 4250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20768593..20769361 | 782..14 | 3845 | 100 | Minus |
3L | 28110227 | 3L | 20768445..20768529 | 866..782 | 410 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:14:40 has no hits.
BO17428.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:59 Download gff for
BO17428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:36 Download gff for
BO17428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 67..919 | 14..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:00 Download gff for
BO17428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 67..919 | 14..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:31:00 Download gff for
BO17428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20768445..20768528 | 783..866 | 98 | <- | Minus |
3L | 20768593..20769364 | 9..782 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:36 Download gff for
BO17428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20761545..20761628 | 783..866 | 98 | <- | Minus |
arm_3L | 20761693..20762464 | 9..782 | 99 | | Minus |
BO17428.complete Sequence
919 bp assembled on 2006-10-11
GenBank Submission: FJ634114
> BO17428.complete
GAAGTTATCAGTCGACATGCTGTTGGGCTGCGTGCAGTTTCAGTGCGCCC
AGGAGACAAAACACGAAGGAATTATATTGTATCTGGAGGGAATCGTTAAT
CTGCAACTTAGTGCTAAGACCGTTGGGCTTTTCGATGCTTTCTATAACTC
GGTGAAACCTATTAATCTGCTGCAGAATAGCCTGGAGTTATCTGCGCCCG
GAAAACTGAGCGCCGGCCGTTCGGAGTTCCATTTCGAACTGCCTTTGGTG
TGCAAAAAGGAACCGCGAATTCTATATGAAACATACCACGGAGTATTCAT
TAACGTGAATTACCAACTCACTTGCACTGTAAAAAGGAATTTTCTTGGCA
AAGCCACGACCAAAATCCAGCAGTTCTGCGTGCAATACAAACCGGTGCCT
CTAAGCGAGGATTCAAAGAAAGTGGTTCCTTTTAGTTTGAGTCCGGACTC
ACTGCAGAAGAATGCCAGCGCCAAGGAGAGACTTTCCATGCCGAGATTCC
TTATAACTGGGCGCCTGGACCGGAGTGAATTCTGCGTAACAACTCCGATT
ACTGGCAGCATTACGGTGCAACACACGGAGGCGGCCATTAAGTCCATTGA
GATGCAATTGGTTCGTGTGGAAACCTGCGGTTGCGACGAGGGGTACTCCA
AGGATGCCACCGAAATCCAGACCATTCAAATAGCCGACGGCAATGTACTG
CCGAAGCTAGAACTACCCATCCATATGGTCCTGCCCAGATTGTTCACCTG
CCCTACGTTGCTCACGAAGAACTTCAAAATCGAGTTTGAACTTAATCTGA
TTGTTGTATTTAAAGAGGACTACACGGTTAGTGAGAACTTCAAAATAGTC
CTTAAACGTTCGACAGGTCCTCTTCCCAGCAAAGTAACAACTGCAGGACG
CGCAAGCTTTCTAGACCAT
BO17428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-RB | 888 | CG4074-PB | 1..885 | 17..901 | 4425 | 100 | Plus |
CG4074-RA | 888 | CG4074-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-RB | 1157 | CG4074-RB | 67..954 | 14..901 | 4440 | 100 | Plus |
CG4074-RA | 1022 | CG4074-RA | 67..954 | 14..901 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20768593..20769361 | 782..14 | 3845 | 100 | Minus |
3L | 28110227 | 3L | 20768410..20768529 | 901..782 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:52:12 has no hits.
BO17428.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:55 Download gff for
BO17428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 1..888 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:53 Download gff for
BO17428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 1..888 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:10 Download gff for
BO17428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 70..954 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:55 Download gff for
BO17428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 1..888 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:44 Download gff for
BO17428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 70..954 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:44 Download gff for
BO17428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20768408..20768528 | 783..903 | 98 | <- | Minus |
3L | 20768593..20769358 | 17..782 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:10 Download gff for
BO17428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20761508..20761628 | 783..903 | 98 | <- | Minus |
arm_3L | 20761693..20762458 | 17..782 | 100 | | Minus |
BO17428.pep Sequence
Translation from 16 to 919
> BO17428.pep
MLLGCVQFQCAQETKHEGIILYLEGIVNLQLSAKTVGLFDAFYNSVKPIN
LLQNSLELSAPGKLSAGRSEFHFELPLVCKKEPRILYETYHGVFINVNYQ
LTCTVKRNFLGKATTKIQQFCVQYKPVPLSEDSKKVVPFSLSPDSLQKNA
SAKERLSMPRFLITGRLDRSEFCVTTPITGSITVQHTEAAIKSIEMQLVR
VETCGCDEGYSKDATEIQTIQIADGNVLPKLELPIHMVLPRLFTCPTLLT
KNFKIEFELNLIVVFKEDYTVSENFKIVLKRSTGPLPSKVTTAGRASFLD
H
BO17428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-PB | 295 | CG4074-PB | 1..295 | 1..295 | 1515 | 100 | Plus |
CG4074-PA | 295 | CG4074-PA | 1..295 | 1..295 | 1515 | 100 | Plus |