Clone BO17428 Report

Search the DGRC for BO17428

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG4074-RA
Protein status:BO17428.pep: validated full length
Sequenced Size:919

Clone Sequence Records

BO17428.3prime Sequence

874 bp (809 high quality bases) assembled on 2006-10-13

> BO17428.3prime
ATGGTCTAGAAAGCTTGCGCGTCCTGCAGTTGTTACTTTGCTGGGAAGAG
GACCTGTCGAACGTTTAAGGACTATTTTGAAGTTCTCACTAACCGTGTAG
TCCTCTTTAAATACAACAATCAGATTAAGTTCAAACTCGATTTTGAAGTT
CTTCGTGAGCAACGTAGGGCAGGTGAACAATCTGGGCAGGACCATATGGA
TGGGTAGTTCTAGCTTCGGCAGTACATTGCCGTCGGCTATTTGAATGGTC
TGGATTTCGGTGGCATCCTTGGAGTACCCCTCGTCGCAACCGCAGGTTTC
CACACGAACCAATTGCATCTCAATGGACTTAATGGCCGCCTCCGTGTGTT
GCACCGTAATGCTGCCAGTAATCGGAGTTGTTACGCAGAATTCACTCCGG
TCCAGGCGCCCAGTTATAAGGAATCTCGGCATGGAAAGTCTCTCCTTGGC
GCTGGCATTCTTCTGCAGTGAGTCCGGACTCAAACTAAAAGGAACCACTT
TCTTTGAATCCTCGCTTAGAGGCACCGGTTTGTATTGCACGCAGAACTGC
TGGATTTTGGTCGTGGCTTTGCCAAGAAAATTCCTTTTTACAGTGCAAGT
GAGTTGGTAATTCACGTTAATGAATACTCCGTGGTATGTTTCATATAGAA
TTCGCGGTTCCTTTTTGCACACCAAAGGCAGTTCGAAATGGAACTCCGAA
CGGCCGGCGCTCAGTTTTCCGGGCGCAGATAACTCCAGGCTATTCTGCAG
CAGATTAATAGGTTTCACCGAGTTATAGAAAGCATCGAAAAGCCCAACGG
TCTTAGCACTAAGTTGCAGATTAACGATTCCCTCCAGATACAATATAATT
CCTTCGTGTTTTGTCTCCTGGGCG

BO17428.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-PA 888 CG4074-RA 30..885 874..19 4280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-RB 1157 CG4074-RB 99..954 874..19 4280 100 Minus
CG4074-RA 1022 CG4074-RA 99..954 874..19 4280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20768593..20769329 138..874 3685 100 Plus
3L 28110227 3L 20768410..20768529 19..138 600 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:22:39 has no hits.

BO17428.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:59 Download gff for BO17428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4074-PA 30..888 15..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:13 Download gff for BO17428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 99..957 15..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:21 Download gff for BO17428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 99..957 15..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:21 Download gff for BO17428.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20768406..20768528 15..137 98 <- Plus
3L 20768593..20769329 138..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:13 Download gff for BO17428.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20761506..20761628 15..137 98 <- Plus
arm_3L 20761693..20762429 138..874 100   Plus

BO17428.5prime Sequence

866 bp (832 high quality bases) assembled on 2006-10-13

> BO17428.5prime
GAAGTTATCAGTCGACATGCTGTTGGGCTGCGTGCAGTTTCAGTGCGCCC
AGGAGACAAAACACGAAGGAATTATATTGTATCTGGAGGGAATCGTTAAT
CTGCAACTTAGTGCTAAGACCGTTGGGCTTTTCGATGCTTTCTATAACTC
GGTGAAACCTATTAATCTGCTGCAGAATAGCCTGGAGTTATCTGCGCCCG
GAAAACTGAGCGCCGGCCGTTCGGAGTTCCATTTCGAACTGCCTTTGGTG
TGCAAAAAGGAACCGCGAATTCTATATGAAACATACCACGGAGTATTCAT
TAACGTGAATTACCAACTCACTTGCACTGTAAAAAGGAATTTTCTTGGCA
AAGCCACGACCAAAATCCAGCAGTTCTGCGTGCAATACAAACCGGTGCCT
CTAAGCGAGGATTCAAAGAAAGTGGTTCCTTTTAGTTTGAGTCCGGACTC
ACTGCAGAAGAATGCCAGCGCCAAGGAGAGACTTTCCATGCCGAGATTCC
TTATAACTGGGCGCCTGGACCGGAGTGAATTCTGCGTAACAACTCCGATT
ACTGGCAGCATTACGGTGCAACACACGGAGGCGGCCATTAAGTCCATTGA
GATGCAATTGGTTCGTGTGGAAACCTGCGGTTGCGACGAGGGGTACTCCA
AGGATGCCACCGAAATCCAGACCATTCAAATAGCCGACGGCAATGTACTG
CCGAAGCTAGAACTACCCATCCATATGGTCCTGCCCAGATTGTTCACCTG
CCCTACGTTGCTCACGAAGAACTTCAAAATCGAGTTTGAACTTAATCTGA
TTGTTGTATTTAAAGAGGACTACACGGTTAGTGAGAACTTCAAAATAGTC
CTTTAACGTTCGACAG

BO17428.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-PA 888 CG4074-RA 1..850 17..866 4225 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-RB 1157 CG4074-RB 67..919 14..866 4250 99.9 Plus
CG4074-RA 1022 CG4074-RA 67..919 14..866 4250 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20768593..20769361 782..14 3845 100 Minus
3L 28110227 3L 20768445..20768529 866..782 410 98.8 Minus
Blast to na_te.dros performed on 2015-02-11 09:14:40 has no hits.

BO17428.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:06:59 Download gff for BO17428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4074-PA 1..850 17..866 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:36 Download gff for BO17428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 67..919 14..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:00 Download gff for BO17428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 67..919 14..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:31:00 Download gff for BO17428.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20768445..20768528 783..866 98 <- Minus
3L 20768593..20769364 9..782 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:36 Download gff for BO17428.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20761545..20761628 783..866 98 <- Minus
arm_3L 20761693..20762464 9..782 99   Minus

BO17428.complete Sequence

919 bp assembled on 2006-10-11

GenBank Submission: FJ634114

> BO17428.complete
GAAGTTATCAGTCGACATGCTGTTGGGCTGCGTGCAGTTTCAGTGCGCCC
AGGAGACAAAACACGAAGGAATTATATTGTATCTGGAGGGAATCGTTAAT
CTGCAACTTAGTGCTAAGACCGTTGGGCTTTTCGATGCTTTCTATAACTC
GGTGAAACCTATTAATCTGCTGCAGAATAGCCTGGAGTTATCTGCGCCCG
GAAAACTGAGCGCCGGCCGTTCGGAGTTCCATTTCGAACTGCCTTTGGTG
TGCAAAAAGGAACCGCGAATTCTATATGAAACATACCACGGAGTATTCAT
TAACGTGAATTACCAACTCACTTGCACTGTAAAAAGGAATTTTCTTGGCA
AAGCCACGACCAAAATCCAGCAGTTCTGCGTGCAATACAAACCGGTGCCT
CTAAGCGAGGATTCAAAGAAAGTGGTTCCTTTTAGTTTGAGTCCGGACTC
ACTGCAGAAGAATGCCAGCGCCAAGGAGAGACTTTCCATGCCGAGATTCC
TTATAACTGGGCGCCTGGACCGGAGTGAATTCTGCGTAACAACTCCGATT
ACTGGCAGCATTACGGTGCAACACACGGAGGCGGCCATTAAGTCCATTGA
GATGCAATTGGTTCGTGTGGAAACCTGCGGTTGCGACGAGGGGTACTCCA
AGGATGCCACCGAAATCCAGACCATTCAAATAGCCGACGGCAATGTACTG
CCGAAGCTAGAACTACCCATCCATATGGTCCTGCCCAGATTGTTCACCTG
CCCTACGTTGCTCACGAAGAACTTCAAAATCGAGTTTGAACTTAATCTGA
TTGTTGTATTTAAAGAGGACTACACGGTTAGTGAGAACTTCAAAATAGTC
CTTAAACGTTCGACAGGTCCTCTTCCCAGCAAAGTAACAACTGCAGGACG
CGCAAGCTTTCTAGACCAT

BO17428.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-RB 888 CG4074-PB 1..885 17..901 4425 100 Plus
CG4074-RA 888 CG4074-PA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-RB 1157 CG4074-RB 67..954 14..901 4440 100 Plus
CG4074-RA 1022 CG4074-RA 67..954 14..901 4440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20768593..20769361 782..14 3845 100 Minus
3L 28110227 3L 20768410..20768529 901..782 600 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:52:12 has no hits.

BO17428.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:55 Download gff for BO17428.complete
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 1..888 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:53 Download gff for BO17428.complete
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 1..888 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:10 Download gff for BO17428.complete
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 70..954 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:55 Download gff for BO17428.complete
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 1..888 17..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:44 Download gff for BO17428.complete
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 70..954 17..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:44 Download gff for BO17428.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20768408..20768528 783..903 98 <- Minus
3L 20768593..20769358 17..782 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:10 Download gff for BO17428.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20761508..20761628 783..903 98 <- Minus
arm_3L 20761693..20762458 17..782 100   Minus

BO17428.pep Sequence

Translation from 16 to 919

> BO17428.pep
MLLGCVQFQCAQETKHEGIILYLEGIVNLQLSAKTVGLFDAFYNSVKPIN
LLQNSLELSAPGKLSAGRSEFHFELPLVCKKEPRILYETYHGVFINVNYQ
LTCTVKRNFLGKATTKIQQFCVQYKPVPLSEDSKKVVPFSLSPDSLQKNA
SAKERLSMPRFLITGRLDRSEFCVTTPITGSITVQHTEAAIKSIEMQLVR
VETCGCDEGYSKDATEIQTIQIADGNVLPKLELPIHMVLPRLFTCPTLLT
KNFKIEFELNLIVVFKEDYTVSENFKIVLKRSTGPLPSKVTTAGRASFLD
H

BO17428.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-PB 295 CG4074-PB 1..295 1..295 1515 100 Plus
CG4074-PA 295 CG4074-PA 1..295 1..295 1515 100 Plus