Clone BO17429 Report

Search the DGRC for BO17429

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:29
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)35Bc-RA
Protein status:BO17429.pep: validated full length
Sequenced Size:892

Clone Sequence Records

BO17429.3prime Sequence

699 bp (626 high quality bases) assembled on 2006-10-13

> BO17429.3prime
ATGGTCTAGAAAGCTTGCGCTGGTACCAGCCAGATTTTGTGGCTCCTCCG
CCTCATTGTCATCCTTGCCATTTATTTGCATCTCCACCAATCGGGGAAAA
GTTTGTGGTGCGTCGTATGTGCCTGGCACATATTTTCCCAATATTTCGGT
GTGTTCCTTCCAGAACTGCGAAGATATCAGATCCTCGTGCAGCGGCACCA
CGGCCTGCCTGCTCTTCTCACCCAATATCACGCGTTTTCTCAGCAGAATC
GTTCCCTTTCTGTACATTGCCGGCAGATTGTTGTAATTTATCCCGAATTC
CTGGAAGAGCAGCTCATTTTTGTCCGCCGAAAAGGTGCCACGGAGTTTCG
CCTCGGCTTGCTGGTTCGTCAGGCCTTTTTCCAAAACGAGTTTCCAAAAG
GCGGTATTGTACAGGTTGTTCACATGCACATCGGCCTGTCGCCAGCTGAG
ATAGTCCTTTAGATTCTGCTCCGAAGGATACAGAACAACGCGACCATCGA
AACACGGAGCATAGGCCAATGGCAGATTCATCCACTTGGACCATTGCATT
ACATAGCTCGAGGAGAACAAGCTGGTGACGTAGGTGAGCAGTTTGGCGGA
TCGTCGCTTGAACGCTGCCGTCTCTTTGCGAAAAACAAAGGAGTACTCAT
CACTTTGACCGTAGGCGAGGACAATATCCCGAAACTCCTGCATCACCGC

BO17429.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4103-PA 861 CG4103-RA 178..858 699..19 3405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bc-RB 1076 CG4103-RB 200..880 699..19 3405 100 Minus
l(2)35Bc-RA 1149 CG4103-RA 273..953 699..19 3405 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15008685..15009365 19..699 3405 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:45:16 has no hits.

BO17429.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:01 Download gff for BO17429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4103-PA 178..861 16..699 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:11 Download gff for BO17429.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bc-RA 273..953 19..699 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:40 Download gff for BO17429.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bc-RA 273..953 19..699 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:40 Download gff for BO17429.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15008685..15009365 19..699 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:11 Download gff for BO17429.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15008685..15009365 19..699 100   Plus

BO17429.5prime Sequence

690 bp (634 high quality bases) assembled on 2006-10-13

> BO17429.5prime
GAAGTTATCAGTCGACATGGCCTGCAGCAGATTCGAGTACGTTAAATCCT
TTGAGCAGGACGACAGCATACTGCCTAATGTGTGGATAGTCATACGAATA
GACGGCAAAAAGTTCCACAAGTTCTCCAAGACGCACGATTTTGAAAAGCC
CAACGATGAAAATGCTCTCAATGTGATGAATGCTGCTGCCACGGCGGTGA
TGCAGGAGTTTCGGGATATTGTCCTCGCCTACGGTCAAAGTGATGAGTAC
TCCTTTGTTTTTCGCAAAGAGACGGCAGCGTTCAAGCGACGATCCGCCAA
ACTGCTCACCTACGTCACCAGCTTGTTCTCCTCGAGCTATGTAATGCAAT
GGTCCAAGTGGATGAATCTGCCATTGGCCTATGCTCCGTGTTTCGATGGT
CGCGTTGTTCTGTATCCTTCGGAGCAGAATCTAAAGGACTATCTCAGCTG
GCGACAGGCCGATGTGCATGTGAACAACCTGTACAATACCGCCTTTTGGA
AACTCGTTTTGGAAAAAGGCCTGACGAACCAGCAAGCCGAGGCGAAACTC
CGTGGCACCTTTTCGGCGGACAAAAATGAGCTGCTCTTCCAGGAATTCGG
GATAAATTACAACAATCTGCCGGCAATGTACAGAAAGGGAACGATTCTGC
TGAAAAAACGCGTGATATTGGGTGAGAAGAGCAGGCAGGC

BO17429.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4103-PA 861 CG4103-RA 1..674 17..690 3345 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bc-RB 1076 CG4103-RB 22..696 16..690 3360 99.9 Plus
l(2)35Bc-RA 1149 CG4103-RA 95..769 16..690 3360 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15008869..15009395 690..164 2620 99.8 Minus
2L 23513712 2L 15009450..15009598 164..16 745 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:27:07 has no hits.

BO17429.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:01 Download gff for BO17429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4103-PA 1..674 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:35 Download gff for BO17429.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bc-RA 95..769 16..690 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:07 Download gff for BO17429.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bc-RA 95..769 16..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:07 Download gff for BO17429.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15008869..15009394 165..690 99 <- Minus
2L 15009450..15009598 16..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:35 Download gff for BO17429.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15008869..15009394 165..690 99 <- Minus
arm_2L 15009450..15009598 16..164 100   Minus

BO17429.complete Sequence

892 bp assembled on 2006-10-11

GenBank Submission: FJ634115

> BO17429.complete
GAAGTTATCAGTCGACATGGCCTGCAGCAGATTCGAGTACGTTAAATCCT
TTGAGCAGGACGACAGCATACTGCCTAATGTGTGGATAGTCATACGAATA
GACGGCAAAAAGTTCCACAAGTTCTCCAAGACGCACGATTTTGAAAAGCC
CAACGATGAAAATGCTCTCAATGTGATGAATGCTGCTGCCACGGCGGTGA
TGCAGGAGTTTCGGGATATTGTCCTCGCCTACGGTCAAAGTGATGAGTAC
TCCTTTGTTTTTCGCAAAGAGACGGCAGCGTTCAAGCGACGATCCGCCAA
ACTGCTCACCTACGTCACCAGCTTGTTCTCCTCGAGCTATGTAATGCAAT
GGTCCAAGTGGATGAATCTGCCATTGGCCTATGCTCCGTGTTTCGATGGT
CGCGTTGTTCTGTATCCTTCGGAGCAGAATCTAAAGGACTATCTCAGCTG
GCGACAGGCCGATGTGCATGTGAACAACCTGTACAATACCGCCTTTTGGA
AACTCGTTTTGGAAAAAGGCCTGACGAACCAGCAAGCCGAGGCGAAACTC
CGTGGCACCTTTTCGGCGGACAAAAATGAGCTGCTCTTCCAGGAATTCGG
GATAAATTACAACAATCTGCCGGCAATGTACAGAAAGGGAACGATTCTGC
TGAGAAAACGCGTGATATTGGGTGAGAAGAGCAGGCAGGCCGTGGTGCCG
CTGCACGAGGATCTGATATCTTCGCAGTTCTGGAAGGAACACACCGAAAT
ATTGGGAAAATATGTGCCAGGCACATACGACGCACCACAAACTTTTCCCC
GATTGGTGGAGATGCAAATAAATGGCAAGGATGACAATGAGGCGGAGGAG
CCACAAAATCTGGCTGGTACCAGCGCAAGCTTTCTAGACCAT

BO17429.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bc-RB 861 CG4103-PB 1..858 17..874 4290 100 Plus
l(2)35Bc-RA 861 CG4103-PA 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bc-RB 1076 CG4103-RB 22..880 16..874 4295 100 Plus
l(2)35Bc-RA 1149 CG4103-RA 95..953 16..874 4295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15008685..15009395 874..164 3555 100 Minus
2L 23513712 2L 15009450..15009598 164..16 745 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:49:14 has no hits.

BO17429.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:56 Download gff for BO17429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4103-RA 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:54 Download gff for BO17429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4103-RA 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:12 Download gff for BO17429.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bc-RA 96..953 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:56 Download gff for BO17429.complete
Subject Subject Range Query Range Percent Splice Strand
CG4103-RA 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:38 Download gff for BO17429.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bc-RA 96..953 17..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:38 Download gff for BO17429.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15008682..15009394 165..876 99 <- Minus
2L 15009450..15009597 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:12 Download gff for BO17429.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15008682..15009394 165..876 99 <- Minus
arm_2L 15009450..15009597 17..164 100   Minus

BO17429.pep Sequence

Translation from 16 to 892

> BO17429.pep
MACSRFEYVKSFEQDDSILPNVWIVIRIDGKKFHKFSKTHDFEKPNDENA
LNVMNAAATAVMQEFRDIVLAYGQSDEYSFVFRKETAAFKRRSAKLLTYV
TSLFSSSYVMQWSKWMNLPLAYAPCFDGRVVLYPSEQNLKDYLSWRQADV
HVNNLYNTAFWKLVLEKGLTNQQAEAKLRGTFSADKNELLFQEFGINYNN
LPAMYRKGTILLRKRVILGEKSRQAVVPLHEDLISSQFWKEHTEILGKYV
PGTYDAPQTFPRLVEMQINGKDDNEAEEPQNLAGTSASFLDH

BO17429.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bc-PB 286 CG4103-PB 1..286 1..286 1501 100 Plus
l(2)35Bc-PA 286 CG4103-PA 1..286 1..286 1501 100 Plus