Clone Sequence Records
BO17429.3prime Sequence
699 bp (626 high quality bases) assembled on 2006-10-13
> BO17429.3prime
ATGGTCTAGAAAGCTTGCGCTGGTACCAGCCAGATTTTGTGGCTCCTCCG
CCTCATTGTCATCCTTGCCATTTATTTGCATCTCCACCAATCGGGGAAAA
GTTTGTGGTGCGTCGTATGTGCCTGGCACATATTTTCCCAATATTTCGGT
GTGTTCCTTCCAGAACTGCGAAGATATCAGATCCTCGTGCAGCGGCACCA
CGGCCTGCCTGCTCTTCTCACCCAATATCACGCGTTTTCTCAGCAGAATC
GTTCCCTTTCTGTACATTGCCGGCAGATTGTTGTAATTTATCCCGAATTC
CTGGAAGAGCAGCTCATTTTTGTCCGCCGAAAAGGTGCCACGGAGTTTCG
CCTCGGCTTGCTGGTTCGTCAGGCCTTTTTCCAAAACGAGTTTCCAAAAG
GCGGTATTGTACAGGTTGTTCACATGCACATCGGCCTGTCGCCAGCTGAG
ATAGTCCTTTAGATTCTGCTCCGAAGGATACAGAACAACGCGACCATCGA
AACACGGAGCATAGGCCAATGGCAGATTCATCCACTTGGACCATTGCATT
ACATAGCTCGAGGAGAACAAGCTGGTGACGTAGGTGAGCAGTTTGGCGGA
TCGTCGCTTGAACGCTGCCGTCTCTTTGCGAAAAACAAAGGAGTACTCAT
CACTTTGACCGTAGGCGAGGACAATATCCCGAAACTCCTGCATCACCGC
BO17429.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4103-PA | 861 | CG4103-RA | 178..858 | 699..19 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Bc-RB | 1076 | CG4103-RB | 200..880 | 699..19 | 3405 | 100 | Minus |
l(2)35Bc-RA | 1149 | CG4103-RA | 273..953 | 699..19 | 3405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15008685..15009365 | 19..699 | 3405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:45:16 has no hits.
BO17429.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:01 Download gff for
BO17429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4103-PA | 178..861 | 16..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:11 Download gff for
BO17429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bc-RA | 273..953 | 19..699 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:40 Download gff for
BO17429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bc-RA | 273..953 | 19..699 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:40 Download gff for
BO17429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15008685..15009365 | 19..699 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:11 Download gff for
BO17429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15008685..15009365 | 19..699 | 100 | | Plus |
BO17429.5prime Sequence
690 bp (634 high quality bases) assembled on 2006-10-13
> BO17429.5prime
GAAGTTATCAGTCGACATGGCCTGCAGCAGATTCGAGTACGTTAAATCCT
TTGAGCAGGACGACAGCATACTGCCTAATGTGTGGATAGTCATACGAATA
GACGGCAAAAAGTTCCACAAGTTCTCCAAGACGCACGATTTTGAAAAGCC
CAACGATGAAAATGCTCTCAATGTGATGAATGCTGCTGCCACGGCGGTGA
TGCAGGAGTTTCGGGATATTGTCCTCGCCTACGGTCAAAGTGATGAGTAC
TCCTTTGTTTTTCGCAAAGAGACGGCAGCGTTCAAGCGACGATCCGCCAA
ACTGCTCACCTACGTCACCAGCTTGTTCTCCTCGAGCTATGTAATGCAAT
GGTCCAAGTGGATGAATCTGCCATTGGCCTATGCTCCGTGTTTCGATGGT
CGCGTTGTTCTGTATCCTTCGGAGCAGAATCTAAAGGACTATCTCAGCTG
GCGACAGGCCGATGTGCATGTGAACAACCTGTACAATACCGCCTTTTGGA
AACTCGTTTTGGAAAAAGGCCTGACGAACCAGCAAGCCGAGGCGAAACTC
CGTGGCACCTTTTCGGCGGACAAAAATGAGCTGCTCTTCCAGGAATTCGG
GATAAATTACAACAATCTGCCGGCAATGTACAGAAAGGGAACGATTCTGC
TGAAAAAACGCGTGATATTGGGTGAGAAGAGCAGGCAGGC
BO17429.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4103-PA | 861 | CG4103-RA | 1..674 | 17..690 | 3345 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Bc-RB | 1076 | CG4103-RB | 22..696 | 16..690 | 3360 | 99.9 | Plus |
l(2)35Bc-RA | 1149 | CG4103-RA | 95..769 | 16..690 | 3360 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15008869..15009395 | 690..164 | 2620 | 99.8 | Minus |
2L | 23513712 | 2L | 15009450..15009598 | 164..16 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:27:07 has no hits.
BO17429.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:01 Download gff for
BO17429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4103-PA | 1..674 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:35 Download gff for
BO17429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bc-RA | 95..769 | 16..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:07 Download gff for
BO17429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bc-RA | 95..769 | 16..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:07 Download gff for
BO17429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15008869..15009394 | 165..690 | 99 | <- | Minus |
2L | 15009450..15009598 | 16..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:35 Download gff for
BO17429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15008869..15009394 | 165..690 | 99 | <- | Minus |
arm_2L | 15009450..15009598 | 16..164 | 100 | | Minus |
BO17429.complete Sequence
892 bp assembled on 2006-10-11
GenBank Submission: FJ634115
> BO17429.complete
GAAGTTATCAGTCGACATGGCCTGCAGCAGATTCGAGTACGTTAAATCCT
TTGAGCAGGACGACAGCATACTGCCTAATGTGTGGATAGTCATACGAATA
GACGGCAAAAAGTTCCACAAGTTCTCCAAGACGCACGATTTTGAAAAGCC
CAACGATGAAAATGCTCTCAATGTGATGAATGCTGCTGCCACGGCGGTGA
TGCAGGAGTTTCGGGATATTGTCCTCGCCTACGGTCAAAGTGATGAGTAC
TCCTTTGTTTTTCGCAAAGAGACGGCAGCGTTCAAGCGACGATCCGCCAA
ACTGCTCACCTACGTCACCAGCTTGTTCTCCTCGAGCTATGTAATGCAAT
GGTCCAAGTGGATGAATCTGCCATTGGCCTATGCTCCGTGTTTCGATGGT
CGCGTTGTTCTGTATCCTTCGGAGCAGAATCTAAAGGACTATCTCAGCTG
GCGACAGGCCGATGTGCATGTGAACAACCTGTACAATACCGCCTTTTGGA
AACTCGTTTTGGAAAAAGGCCTGACGAACCAGCAAGCCGAGGCGAAACTC
CGTGGCACCTTTTCGGCGGACAAAAATGAGCTGCTCTTCCAGGAATTCGG
GATAAATTACAACAATCTGCCGGCAATGTACAGAAAGGGAACGATTCTGC
TGAGAAAACGCGTGATATTGGGTGAGAAGAGCAGGCAGGCCGTGGTGCCG
CTGCACGAGGATCTGATATCTTCGCAGTTCTGGAAGGAACACACCGAAAT
ATTGGGAAAATATGTGCCAGGCACATACGACGCACCACAAACTTTTCCCC
GATTGGTGGAGATGCAAATAAATGGCAAGGATGACAATGAGGCGGAGGAG
CCACAAAATCTGGCTGGTACCAGCGCAAGCTTTCTAGACCAT
BO17429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Bc-RB | 861 | CG4103-PB | 1..858 | 17..874 | 4290 | 100 | Plus |
l(2)35Bc-RA | 861 | CG4103-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Bc-RB | 1076 | CG4103-RB | 22..880 | 16..874 | 4295 | 100 | Plus |
l(2)35Bc-RA | 1149 | CG4103-RA | 95..953 | 16..874 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15008685..15009395 | 874..164 | 3555 | 100 | Minus |
2L | 23513712 | 2L | 15009450..15009598 | 164..16 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:49:14 has no hits.
BO17429.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:56 Download gff for
BO17429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4103-RA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:54 Download gff for
BO17429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4103-RA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:12 Download gff for
BO17429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bc-RA | 96..953 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:56 Download gff for
BO17429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4103-RA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:38 Download gff for
BO17429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bc-RA | 96..953 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:38 Download gff for
BO17429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15008682..15009394 | 165..876 | 99 | <- | Minus |
2L | 15009450..15009597 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:12 Download gff for
BO17429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15008682..15009394 | 165..876 | 99 | <- | Minus |
arm_2L | 15009450..15009597 | 17..164 | 100 | | Minus |
BO17429.pep Sequence
Translation from 16 to 892
> BO17429.pep
MACSRFEYVKSFEQDDSILPNVWIVIRIDGKKFHKFSKTHDFEKPNDENA
LNVMNAAATAVMQEFRDIVLAYGQSDEYSFVFRKETAAFKRRSAKLLTYV
TSLFSSSYVMQWSKWMNLPLAYAPCFDGRVVLYPSEQNLKDYLSWRQADV
HVNNLYNTAFWKLVLEKGLTNQQAEAKLRGTFSADKNELLFQEFGINYNN
LPAMYRKGTILLRKRVILGEKSRQAVVPLHEDLISSQFWKEHTEILGKYV
PGTYDAPQTFPRLVEMQINGKDDNEAEEPQNLAGTSASFLDH
BO17429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Bc-PB | 286 | CG4103-PB | 1..286 | 1..286 | 1501 | 100 | Plus |
l(2)35Bc-PA | 286 | CG4103-PA | 1..286 | 1..286 | 1501 | 100 | Plus |