Clone BO17432 Report

Search the DGRC for BO17432

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG9722-RA
Protein status:BO17432.pep: validated full length
Sequenced Size:826

Clone Sequence Records

BO17432.3prime Sequence

824 bp (786 high quality bases) assembled on 2006-10-13

> BO17432.3prime
ATGGTCTAGAAAGCTTGCATCGGATCCTCCGATTAATTGCAAAATGTCCA
GGAATATGTTCATTACATCCATGTAAATATTTAGGGCAGCGAATATGTAC
TCCTCGGGACTAATGGAGTACCTATGCTTGCCTCCCATCATCAATTGTGT
ATCGTAAACTAAATAAACGGAGAAGAGCAGAGCGCTCAATGAGGCATATA
TGGTGGTGACCATATGTCCGCCCACGAAGATGGTCACAATTCCAAAGAAG
AGCAGTATTATCAGGCAGCTCACCAGGAGGCCACCCATGACGGTAAAGTC
GTAACGCGTCTGCAGAGCAAAAAGGGTGAGTCCAAGGCAAACTGACGCCG
TGATTAGCACGGCCATGAAAATCTCCATTGGGGCATAACGACAGGCTGCC
ACGCCCAGCAGAAAGGACTCGGCTATCGTGAAGGCAGATAGGAAGATGAA
GTTAGCTGGGGTCTGACGACGCAGATCCTCATTGCAGCCCAGAGCCACCA
GAGAGAAGACCACTATTAGTATGGCCACCACAAATATCCAGGTGCTTTCT
GCCACCATCAGACGCACCCGTTTATCAGCAGTAAGTGAAACTATAACCAC
CAGGGAAGTGATCAGTTGGGCCAACAGGATGAGGTACACCTTCCGGATGA
ATCCTCGCCGGATGCTGGCGCTGCAGAATCCCAAGCCCTTGTCTGGATCA
TCCTGTCCGATTTCCGATCCGTAAGCTGTATATCTTCCCAGCGGAATACA
CTCCGCCTGGTGGCTCCGATTTCCATACTGATGTACTGGTTCTTGTAAAA
TATCCAGCATGTCGACTGATAACT

BO17432.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-PA 795 CG9722-RA 1..792 810..19 3960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-RA 945 CG9722-RA 71..862 810..19 3960 100 Minus
CG3814-RD 933 CG3814-RD 639..793 198..44 295 79.4 Minus
CG3814-RC 1011 CG3814-RC 717..871 198..44 295 79.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14152968..14153759 19..810 3960 100 Plus
2R 25286936 2R 12875304..12875458 44..198 295 79.4 Plus
2R 25286936 2R 12877685..12877822 43..180 240 78.3 Plus
Blast to na_te.dros performed on 2015-02-10 21:27:27 has no hits.

BO17432.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:06 Download gff for BO17432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9722-PA 1..795 18..810 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:37 Download gff for BO17432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..867 11..810 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:33 Download gff for BO17432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..867 11..810 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:33 Download gff for BO17432.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14152963..14153759 11..810 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:37 Download gff for BO17432.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9978685..9979481 11..810 99   Plus

BO17432.5prime Sequence

824 bp (779 high quality bases) assembled on 2006-10-13

> BO17432.5prime
GAAGTTATCAGTCGACATGCTGGATATTTTACAAGAACCAGTACATCAGT
ATGGAAATCGGAGCCACCAGGCGGAGTGTATTCCGCTGGGAAGATATACA
GCTTACGGATCGGAAATCGGACAGGATGATCCAGACAAGGGCTTGGGATT
CTGCAGCGCCAGCATCCGGCGAGGATTCATCCGGAAGGTGTACCTCATCC
TGTTGGCCCAACTGATCACTTCCCTGGTGGTTATAGTTTCACTTACTGCT
GATAAACGGGTGCGTCTGATGGTGGCAGAAAGCACCTGGATATTTGTGGT
GGCCATACTAATAGTGGTCTTCTCTCTGGTGGCTCTGGGCTGCAATGAGG
ATCTGCGTCGTCAGACCCCAGCTAACTTCATCTTCCTATCTGCCTTCACG
ATAGCCGAGTCCTTTCTGCTGGGCGTGGCAGCCTGTCGTTATGCCCCAAT
GGAGATTTTCATGGCCGTGCTAATCACGGCGTCAGTTTGCCTTGGACTCA
CCCTTTTTGCTCTGCAGACGCGTTACGACTTTACCGTCATGGGTGGCCTC
CTGGTGAGCTGCCTGATAATACTGCTCTTCTTTGGAATTGTGACCATCTT
CGTGGGCGGACATATGGTCACCACCATATATGCCTCATTGAGCGCTCTGC
TCTTCTCCGTTTATTTAGTTTACGATACACAATTGATGATGGGAGGCAAG
CATAGGTACTCCATTAGTCCCGAGGAGTACATATTCGCTGCCCTAAATAT
TTACATGGATGTAATGAACATATTCCTGGACATTTTGCAATTAATCGGAG
GATCCGATGCAAGCTTTCTAGAAC

BO17432.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-PA 795 CG9722-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-RA 945 CG9722-RA 71..862 17..808 3960 100 Plus
CG3814-RD 933 CG3814-RD 639..793 629..783 295 79.4 Plus
CG3814-RC 1011 CG3814-RC 717..871 629..783 295 79.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14152968..14153759 808..17 3960 100 Minus
2R 25286936 2R 12875304..12875458 783..629 295 79.4 Minus
2R 25286936 2R 12877685..12877822 784..647 240 78.3 Minus
Blast to na_te.dros performed on 2015-02-08 12:18:10 has no hits.

BO17432.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:06 Download gff for BO17432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9722-PA 1..795 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:38 Download gff for BO17432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..867 17..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:16 Download gff for BO17432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..867 17..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:16 Download gff for BO17432.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14152963..14153759 17..816 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:38 Download gff for BO17432.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9978685..9979481 17..816 99   Minus

BO17432.complete Sequence

826 bp assembled on 2006-10-11

GenBank Submission: FJ634116

> BO17432.complete
GAAGTTATCAGTCGACATGCTGGATATTTTACAAGAACCAGTACATCAGT
ATGGAAATCGGAGCCACCAGGCGGAGTGTATTCCGCTGGGAAGATATACA
GCTTACGGATCGGAAATCGGACAGGATGATCCAGACAAGGGCTTGGGATT
CTGCAGCGCCAGCATCCGGCGAGGATTCATCCGGAAGGTGTACCTCATCC
TGTTGGCCCAACTGATCACTTCCCTGGTGGTTATAGTTTCACTTACTGCT
GATAAACGGGTGCGTCTGATGGTGGCAGAAAGCACCTGGATATTTGTGGT
GGCCATACTAATAGTGGTCTTCTCTCTGGTGGCTCTGGGCTGCAATGAGG
ATCTGCGTCGTCAGACCCCAGCTAACTTCATCTTCCTATCTGCCTTCACG
ATAGCCGAGTCCTTTCTGCTGGGCGTGGCAGCCTGTCGTTATGCCCCAAT
GGAGATTTTCATGGCCGTGCTAATCACGGCGTCAGTTTGCCTTGGACTCA
CCCTTTTTGCTCTGCAGACGCGTTACGACTTTACCGTCATGGGTGGCCTC
CTGGTGAGCTGCCTGATAATACTGCTCTTCTTTGGAATTGTGACCATCTT
CGTGGGCGGACATATGGTCACCACCATATATGCCTCATTGAGCGCTCTGC
TCTTCTCCGTTTATTTAGTTTACGATACACAATTGATGATGGGAGGCAAG
CATAGGTACTCCATTAGTCCCGAGGAGTACATATTCGCTGCCCTAAATAT
TTACATGGATGTAATGAACATATTCCTGGACATTTTGCAATTAATCGGAG
GATCCGATGCAAGCTTTCTAGACCAT

BO17432.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-RA 795 CG9722-PA 1..792 17..808 3960 100 Plus
CG3814-RD 720 CG3814-PD 535..689 629..783 295 79.4 Plus
CG3814-RC 612 CG3814-PC 427..581 629..783 295 79.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-RA 945 CG9722-RA 71..862 17..808 3960 100 Plus
CG3814-RD 933 CG3814-RD 639..793 629..783 295 79.4 Plus
CG3814-RC 1011 CG3814-RC 717..871 629..783 295 79.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14152968..14153759 808..17 3960 100 Minus
2R 25286936 2R 12875304..12875458 783..629 295 79.4 Minus
2R 25286936 2R 12877685..12877822 784..647 240 78.3 Minus
Blast to na_te.dros performed on 2014-11-27 13:47:32 has no hits.

BO17432.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:57 Download gff for BO17432.complete
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 1..795 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:56 Download gff for BO17432.complete
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..865 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:58 Download gff for BO17432.complete
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..862 17..810 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:57 Download gff for BO17432.complete
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..865 17..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:04 Download gff for BO17432.complete
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..862 17..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:04 Download gff for BO17432.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14152966..14153759 17..810 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:58 Download gff for BO17432.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9978688..9979481 17..810 99   Minus

BO17432.pep Sequence

Translation from 16 to 826

> BO17432.pep
MLDILQEPVHQYGNRSHQAECIPLGRYTAYGSEIGQDDPDKGLGFCSASI
RRGFIRKVYLILLAQLITSLVVIVSLTADKRVRLMVAESTWIFVVAILIV
VFSLVALGCNEDLRRQTPANFIFLSAFTIAESFLLGVAACRYAPMEIFMA
VLITASVCLGLTLFALQTRYDFTVMGGLLVSCLIILLFFGIVTIFVGGHM
VTTIYASLSALLFSVYLVYDTQLMMGGKHRYSISPEEYIFAALNIYMDVM
NIFLDILQLIGGSDASFLDH

BO17432.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-PA 264 CG9722-PA 1..264 1..264 1325 100 Plus
Nmda1-PH 313 CG3798-PH 76..311 25..263 709 55.8 Plus
Nmda1-PG 313 CG3798-PG 76..311 25..263 709 55.8 Plus
Nmda1-PA 313 CG3798-PA 76..311 25..263 709 55.8 Plus
Nmda1-PB 313 CG3798-PB 76..311 25..263 709 55.8 Plus