Clone Sequence Records
BO17432.3prime Sequence
824 bp (786 high quality bases) assembled on 2006-10-13
> BO17432.3prime
ATGGTCTAGAAAGCTTGCATCGGATCCTCCGATTAATTGCAAAATGTCCA
GGAATATGTTCATTACATCCATGTAAATATTTAGGGCAGCGAATATGTAC
TCCTCGGGACTAATGGAGTACCTATGCTTGCCTCCCATCATCAATTGTGT
ATCGTAAACTAAATAAACGGAGAAGAGCAGAGCGCTCAATGAGGCATATA
TGGTGGTGACCATATGTCCGCCCACGAAGATGGTCACAATTCCAAAGAAG
AGCAGTATTATCAGGCAGCTCACCAGGAGGCCACCCATGACGGTAAAGTC
GTAACGCGTCTGCAGAGCAAAAAGGGTGAGTCCAAGGCAAACTGACGCCG
TGATTAGCACGGCCATGAAAATCTCCATTGGGGCATAACGACAGGCTGCC
ACGCCCAGCAGAAAGGACTCGGCTATCGTGAAGGCAGATAGGAAGATGAA
GTTAGCTGGGGTCTGACGACGCAGATCCTCATTGCAGCCCAGAGCCACCA
GAGAGAAGACCACTATTAGTATGGCCACCACAAATATCCAGGTGCTTTCT
GCCACCATCAGACGCACCCGTTTATCAGCAGTAAGTGAAACTATAACCAC
CAGGGAAGTGATCAGTTGGGCCAACAGGATGAGGTACACCTTCCGGATGA
ATCCTCGCCGGATGCTGGCGCTGCAGAATCCCAAGCCCTTGTCTGGATCA
TCCTGTCCGATTTCCGATCCGTAAGCTGTATATCTTCCCAGCGGAATACA
CTCCGCCTGGTGGCTCCGATTTCCATACTGATGTACTGGTTCTTGTAAAA
TATCCAGCATGTCGACTGATAACT
BO17432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-PA | 795 | CG9722-RA | 1..792 | 810..19 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-RA | 945 | CG9722-RA | 71..862 | 810..19 | 3960 | 100 | Minus |
CG3814-RD | 933 | CG3814-RD | 639..793 | 198..44 | 295 | 79.4 | Minus |
CG3814-RC | 1011 | CG3814-RC | 717..871 | 198..44 | 295 | 79.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14152968..14153759 | 19..810 | 3960 | 100 | Plus |
2R | 25286936 | 2R | 12875304..12875458 | 44..198 | 295 | 79.4 | Plus |
2R | 25286936 | 2R | 12877685..12877822 | 43..180 | 240 | 78.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:27:27 has no hits.
BO17432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:06 Download gff for
BO17432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-PA | 1..795 | 18..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:37 Download gff for
BO17432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..867 | 11..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:33 Download gff for
BO17432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..867 | 11..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:33 Download gff for
BO17432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14152963..14153759 | 11..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:37 Download gff for
BO17432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9978685..9979481 | 11..810 | 99 | | Plus |
BO17432.5prime Sequence
824 bp (779 high quality bases) assembled on 2006-10-13
> BO17432.5prime
GAAGTTATCAGTCGACATGCTGGATATTTTACAAGAACCAGTACATCAGT
ATGGAAATCGGAGCCACCAGGCGGAGTGTATTCCGCTGGGAAGATATACA
GCTTACGGATCGGAAATCGGACAGGATGATCCAGACAAGGGCTTGGGATT
CTGCAGCGCCAGCATCCGGCGAGGATTCATCCGGAAGGTGTACCTCATCC
TGTTGGCCCAACTGATCACTTCCCTGGTGGTTATAGTTTCACTTACTGCT
GATAAACGGGTGCGTCTGATGGTGGCAGAAAGCACCTGGATATTTGTGGT
GGCCATACTAATAGTGGTCTTCTCTCTGGTGGCTCTGGGCTGCAATGAGG
ATCTGCGTCGTCAGACCCCAGCTAACTTCATCTTCCTATCTGCCTTCACG
ATAGCCGAGTCCTTTCTGCTGGGCGTGGCAGCCTGTCGTTATGCCCCAAT
GGAGATTTTCATGGCCGTGCTAATCACGGCGTCAGTTTGCCTTGGACTCA
CCCTTTTTGCTCTGCAGACGCGTTACGACTTTACCGTCATGGGTGGCCTC
CTGGTGAGCTGCCTGATAATACTGCTCTTCTTTGGAATTGTGACCATCTT
CGTGGGCGGACATATGGTCACCACCATATATGCCTCATTGAGCGCTCTGC
TCTTCTCCGTTTATTTAGTTTACGATACACAATTGATGATGGGAGGCAAG
CATAGGTACTCCATTAGTCCCGAGGAGTACATATTCGCTGCCCTAAATAT
TTACATGGATGTAATGAACATATTCCTGGACATTTTGCAATTAATCGGAG
GATCCGATGCAAGCTTTCTAGAAC
BO17432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-PA | 795 | CG9722-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-RA | 945 | CG9722-RA | 71..862 | 17..808 | 3960 | 100 | Plus |
CG3814-RD | 933 | CG3814-RD | 639..793 | 629..783 | 295 | 79.4 | Plus |
CG3814-RC | 1011 | CG3814-RC | 717..871 | 629..783 | 295 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14152968..14153759 | 808..17 | 3960 | 100 | Minus |
2R | 25286936 | 2R | 12875304..12875458 | 783..629 | 295 | 79.4 | Minus |
2R | 25286936 | 2R | 12877685..12877822 | 784..647 | 240 | 78.3 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:18:10 has no hits.
BO17432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:06 Download gff for
BO17432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-PA | 1..795 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:38 Download gff for
BO17432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..867 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:16 Download gff for
BO17432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..867 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:16 Download gff for
BO17432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14152963..14153759 | 17..816 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:38 Download gff for
BO17432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9978685..9979481 | 17..816 | 99 | | Minus |
BO17432.complete Sequence
826 bp assembled on 2006-10-11
GenBank Submission: FJ634116
> BO17432.complete
GAAGTTATCAGTCGACATGCTGGATATTTTACAAGAACCAGTACATCAGT
ATGGAAATCGGAGCCACCAGGCGGAGTGTATTCCGCTGGGAAGATATACA
GCTTACGGATCGGAAATCGGACAGGATGATCCAGACAAGGGCTTGGGATT
CTGCAGCGCCAGCATCCGGCGAGGATTCATCCGGAAGGTGTACCTCATCC
TGTTGGCCCAACTGATCACTTCCCTGGTGGTTATAGTTTCACTTACTGCT
GATAAACGGGTGCGTCTGATGGTGGCAGAAAGCACCTGGATATTTGTGGT
GGCCATACTAATAGTGGTCTTCTCTCTGGTGGCTCTGGGCTGCAATGAGG
ATCTGCGTCGTCAGACCCCAGCTAACTTCATCTTCCTATCTGCCTTCACG
ATAGCCGAGTCCTTTCTGCTGGGCGTGGCAGCCTGTCGTTATGCCCCAAT
GGAGATTTTCATGGCCGTGCTAATCACGGCGTCAGTTTGCCTTGGACTCA
CCCTTTTTGCTCTGCAGACGCGTTACGACTTTACCGTCATGGGTGGCCTC
CTGGTGAGCTGCCTGATAATACTGCTCTTCTTTGGAATTGTGACCATCTT
CGTGGGCGGACATATGGTCACCACCATATATGCCTCATTGAGCGCTCTGC
TCTTCTCCGTTTATTTAGTTTACGATACACAATTGATGATGGGAGGCAAG
CATAGGTACTCCATTAGTCCCGAGGAGTACATATTCGCTGCCCTAAATAT
TTACATGGATGTAATGAACATATTCCTGGACATTTTGCAATTAATCGGAG
GATCCGATGCAAGCTTTCTAGACCAT
BO17432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-RA | 795 | CG9722-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
CG3814-RD | 720 | CG3814-PD | 535..689 | 629..783 | 295 | 79.4 | Plus |
CG3814-RC | 612 | CG3814-PC | 427..581 | 629..783 | 295 | 79.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-RA | 945 | CG9722-RA | 71..862 | 17..808 | 3960 | 100 | Plus |
CG3814-RD | 933 | CG3814-RD | 639..793 | 629..783 | 295 | 79.4 | Plus |
CG3814-RC | 1011 | CG3814-RC | 717..871 | 629..783 | 295 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14152968..14153759 | 808..17 | 3960 | 100 | Minus |
2R | 25286936 | 2R | 12875304..12875458 | 783..629 | 295 | 79.4 | Minus |
2R | 25286936 | 2R | 12877685..12877822 | 784..647 | 240 | 78.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:47:32 has no hits.
BO17432.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:57 Download gff for
BO17432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 1..795 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:56 Download gff for
BO17432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..865 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:58 Download gff for
BO17432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..862 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:57 Download gff for
BO17432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..865 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:04 Download gff for
BO17432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..862 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:04 Download gff for
BO17432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14152966..14153759 | 17..810 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:58 Download gff for
BO17432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9978688..9979481 | 17..810 | 99 | | Minus |
BO17432.pep Sequence
Translation from 16 to 826
> BO17432.pep
MLDILQEPVHQYGNRSHQAECIPLGRYTAYGSEIGQDDPDKGLGFCSASI
RRGFIRKVYLILLAQLITSLVVIVSLTADKRVRLMVAESTWIFVVAILIV
VFSLVALGCNEDLRRQTPANFIFLSAFTIAESFLLGVAACRYAPMEIFMA
VLITASVCLGLTLFALQTRYDFTVMGGLLVSCLIILLFFGIVTIFVGGHM
VTTIYASLSALLFSVYLVYDTQLMMGGKHRYSISPEEYIFAALNIYMDVM
NIFLDILQLIGGSDASFLDH
BO17432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-PA | 264 | CG9722-PA | 1..264 | 1..264 | 1325 | 100 | Plus |
Nmda1-PH | 313 | CG3798-PH | 76..311 | 25..263 | 709 | 55.8 | Plus |
Nmda1-PG | 313 | CG3798-PG | 76..311 | 25..263 | 709 | 55.8 | Plus |
Nmda1-PA | 313 | CG3798-PA | 76..311 | 25..263 | 709 | 55.8 | Plus |
Nmda1-PB | 313 | CG3798-PB | 76..311 | 25..263 | 709 | 55.8 | Plus |