Clone BO17433 Report

Search the DGRC for BO17433

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptgdl-RA
Protein status:BO17433.pep: validated full length
Sequenced Size:616

Clone Sequence Records

BO17433.5prime Sequence

614 bp (614 high quality bases) assembled on 2006-10-13

> BO17433.5prime
GAAGTTATCAGTCGACATGGCGGACATACCGGCAACCAGCGAAGGTAGTG
CGAACACTAGTGAGGCAGTAGTGGAGTATCAGCAGCCAACTCCGGAGTTT
TTACAACGCAAAATCTATTTTTTGGTGGACCAATTGCGAACTTACCATTC
GGAACTTCCCGAAAACTTGCAGACACGCATTTCCTACGATCTACTCACCG
AACTCGCCAATTGTGTGCTAAACGATGGCATTTTTGTAATAGTAAAAGCA
TTAATGGAGCTGCAACACGAAACCGAAAGACACTTGATTAAAATACGGAT
GCAGGCGGAGAACGAGTATGAAATAGAAGTGGCCGAGTGGAGGAGCAAGA
TCAAGGATCCCGAGGAGTTGCGCCACATTTTGGGACTCATGAAAATAAAG
CACACTAAGAAACTACACGAGTCGGATACGAAGATTATCGAAATACTAGA
TCAAAAGGTTAATGACCAACAATCCACACTTCAAAAGGCCGGCGTTCCCG
GCTTCTATGTCACCGAGAATCCAAAGGAGATAAAAATACAAATGTTCCTG
TTGGACTTCATTTTGCGTTTGAGCCGGCTAAAATACGAGCCCGGCAAAGC
AAGCTTTCTAGACC

BO17433.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG33756-PA 585 gdl-RA 1..582 17..598 2860 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
gdl-ORF39-RA 965 CG33755-RA 292..873 17..598 2880 99.7 Plus
gdl-RB 1175 CG33756-RB 292..873 17..598 2880 99.7 Plus
gdl-RC 1022 CG33756-RC 139..720 17..598 2880 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15509937..15510233 163..459 1470 99.7 Plus
3L 28110227 3L 15509736..15509881 17..162 730 100 Plus
3L 28110227 3L 15510603..15510745 456..598 700 99.3 Plus
Blast to na_te.dros performed on 2015-02-03 06:52:33 has no hits.

BO17433.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:07 Download gff for BO17433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33756-PA 1..585 17..602 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:43 Download gff for BO17433.5prime
Subject Subject Range Query Range Percent Splice Strand
gdl-ORF39-RA 282..876 5..602 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:13 Download gff for BO17433.5prime
Subject Subject Range Query Range Percent Splice Strand
gdl-RC 129..723 5..602 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:13 Download gff for BO17433.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15510605..15510748 458..602 97   Plus
3L 15509736..15509881 17..162 100 -> Plus
3L 15509937..15510231 163..457 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:43 Download gff for BO17433.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15503705..15503848 458..602 97   Plus
arm_3L 15502836..15502981 17..162 100 -> Plus
arm_3L 15503037..15503331 163..457 99 -> Plus

BO17433.3prime Sequence

614 bp (614 high quality bases) assembled on 2006-10-13

> BO17433.3prime
ATGGTCTAGAAAGCTTGCTTTGCCGGGCTCGTATTTTAGCCGGCTCAAAC
GCAAAATGAAGTCCAACAGGAACATTTGTATTTTTATCTCCTTTGGATTC
TCGGTGACATAGAAGCCGGGAACGCCGGCCTTTTGAAGTGTGGATTGTTG
GTCATTAACCTTTTGATCTAGTATTTCGATAATCTTCGTATCCGACTCGT
GTAGTTTCTTAGTGTGCTTTATTTTCATGAGTCCCAAAATGTGGCGCAAC
TCCTCGGGATCCTTGATCTTGCTCCTCCACTCGGCCACTTCTATTTCATA
CTCGTTCTCCGCCTGCATCCGTATTTTAATCAAGTGTCTTTCGGTTTCGT
GTTGCAGCTCCATTAATGCTTTTACTATTACAAAAATGCCATCGTTTAGC
ACACAATTGGCGAGTTCGGTGAGTAGATCGTAGGAAATGCGTGTCTGCAA
GTTTTCGGGAAGTTCCGAATGGTAAGTTCGCAATTGGTCCACCAAAAAAT
AGATTTTGCGTTGTAAAAACTCCGGAGTTGGCTGCTGATACTCCACTACT
GCCTCACTAGTGTTCGCACTACCTTCGCTGGTTGCCGGTATGTCCGCCAT
GTCGACTGATAACT

BO17433.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG33756-PA 585 gdl-RA 1..582 600..19 2860 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
gdl-ORF39-RA 965 CG33755-RA 292..873 600..19 2880 99.7 Minus
gdl-RB 1175 CG33756-RB 292..873 600..19 2880 99.7 Minus
gdl-RC 1022 CG33756-RC 139..720 600..19 2880 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15509937..15510233 454..158 1470 99.7 Minus
3L 28110227 3L 15509736..15509881 600..455 730 100 Minus
3L 28110227 3L 15510603..15510745 161..19 700 99.3 Minus
Blast to na_te.dros performed on 2015-02-10 17:28:00 has no hits.

BO17433.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:06 Download gff for BO17433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33756-PA 1..585 15..600 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:59 Download gff for BO17433.3prime
Subject Subject Range Query Range Percent Splice Strand
gdl-ORF39-RA 282..876 15..612 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:45 Download gff for BO17433.3prime
Subject Subject Range Query Range Percent Splice Strand
gdl-RC 129..723 15..612 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:45 Download gff for BO17433.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15509726..15509881 455..612 96 -> Minus
3L 15509937..15510231 160..454 99 -> Minus
3L 15510605..15510748 15..159 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:59 Download gff for BO17433.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15502826..15502981 455..612 96 -> Minus
arm_3L 15503037..15503331 160..454 99 -> Minus
arm_3L 15503705..15503848 15..159 97   Minus

BO17433.complete Sequence

616 bp assembled on 2006-10-11

GenBank Submission: FJ634117

> BO17433.complete
GAAGTTATCAGTCGACATGGCGGACATACCGGCAACCAGCGAAGGTAGTG
CGAACACTAGTGAGGCAGTAGTGGAGTATCAGCAGCCAACTCCGGAGTTT
TTACAACGCAAAATCTATTTTTTGGTGGACCAATTGCGAACTTACCATTC
GGAACTTCCCGAAAACTTGCAGACACGCATTTCCTACGATCTACTCACCG
AACTCGCCAATTGTGTGCTAAACGATGGCATTTTTGTAATAGTAAAAGCA
TTAATGGAGCTGCAACACGAAACCGAAAGACACTTGATTAAAATACGGAT
GCAGGCGGAGAACGAGTATGAAATAGAAGTGGCCGAGTGGAGGAGCAAGA
TCAAGGATCCCGAGGAGTTGCGCCACATTTTGGGACTCATGAAAATAAAG
CACACTAAGAAACTACACGAGTCGGATACGAAGATTATCGAAATACTAGA
TCAAAAGGTTAATGACCAACAATCCACACTTCAAAAGGCCGGCGTTCCCG
GCTTCTATGTCACCGAGAATCCAAAGGAGATAAAAATACAAATGTTCCTG
TTGGACTTCATTTTGCGTTTGAGCCGGCTAAAATACGAGCCCGGCAAAGC
AAGCTTTCTAGACCAT

BO17433.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
gdl-RB 585 CG33756-PB 1..582 17..598 2880 99.7 Plus
gdl-RC 585 CG33756-PC 1..582 17..598 2880 99.7 Plus
gdl-RA 585 CG33756-PA 1..582 17..598 2880 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
gdl-ORF39-RA 965 CG33755-RA 292..873 17..598 2880 99.7 Plus
gdl-RB 1175 CG33756-RB 292..873 17..598 2880 99.7 Plus
gdl-RC 1022 CG33756-RC 139..720 17..598 2880 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15509937..15510233 163..459 1470 99.7 Plus
3L 28110227 3L 15509736..15509881 17..162 730 100 Plus
3L 28110227 3L 15510603..15510745 456..598 700 99.3 Plus
Blast to na_te.dros performed on 2014-11-26 21:46:09 has no hits.

BO17433.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:58 Download gff for BO17433.complete
Subject Subject Range Query Range Percent Splice Strand
gdl-RA 1..585 17..602 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:58 Download gff for BO17433.complete
Subject Subject Range Query Range Percent Splice Strand
gdl-ORF39-RA 282..876 5..602 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:09 Download gff for BO17433.complete
Subject Subject Range Query Range Percent Splice Strand
gdl-ORF39-RA 292..873 17..600 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:58 Download gff for BO17433.complete
Subject Subject Range Query Range Percent Splice Strand
gdl-ORF39-RA 282..876 5..602 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:49 Download gff for BO17433.complete
Subject Subject Range Query Range Percent Splice Strand
gdl-RC 139..720 17..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:49 Download gff for BO17433.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15510605..15510745 458..600 97   Plus
3L 15509736..15509881 17..162 100 -> Plus
3L 15509937..15510231 163..457 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:09 Download gff for BO17433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15502836..15502981 17..162 100 -> Plus
arm_3L 15503037..15503331 163..457 99 -> Plus
arm_3L 15503705..15503845 458..600 97   Plus

BO17433.pep Sequence

Translation from 16 to 616

> BO17433.pep
MADIPATSEGSANTSEAVVEYQQPTPEFLQRKIYFLVDQLRTYHSELPEN
LQTRISYDLLTELANCVLNDGIFVIVKALMELQHETERHLIKIRMQAENE
YEIEVAEWRSKIKDPEELRHILGLMKIKHTKKLHESDTKIIEILDQKVND
QQSTLQKAGVPGFYVTENPKEIKIQMFLLDFILRLSRLKYEPGKASFLDH

BO17433.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
gdl-PB 194 CG33756-PB 1..194 1..194 988 100 Plus
gdl-PC 194 CG33756-PC 1..194 1..194 988 100 Plus
gdl-PA 194 CG33756-PA 1..194 1..194 988 100 Plus