Clone Sequence Records
BO17433.5prime Sequence
614 bp (614 high quality bases) assembled on 2006-10-13
> BO17433.5prime
GAAGTTATCAGTCGACATGGCGGACATACCGGCAACCAGCGAAGGTAGTG
CGAACACTAGTGAGGCAGTAGTGGAGTATCAGCAGCCAACTCCGGAGTTT
TTACAACGCAAAATCTATTTTTTGGTGGACCAATTGCGAACTTACCATTC
GGAACTTCCCGAAAACTTGCAGACACGCATTTCCTACGATCTACTCACCG
AACTCGCCAATTGTGTGCTAAACGATGGCATTTTTGTAATAGTAAAAGCA
TTAATGGAGCTGCAACACGAAACCGAAAGACACTTGATTAAAATACGGAT
GCAGGCGGAGAACGAGTATGAAATAGAAGTGGCCGAGTGGAGGAGCAAGA
TCAAGGATCCCGAGGAGTTGCGCCACATTTTGGGACTCATGAAAATAAAG
CACACTAAGAAACTACACGAGTCGGATACGAAGATTATCGAAATACTAGA
TCAAAAGGTTAATGACCAACAATCCACACTTCAAAAGGCCGGCGTTCCCG
GCTTCTATGTCACCGAGAATCCAAAGGAGATAAAAATACAAATGTTCCTG
TTGGACTTCATTTTGCGTTTGAGCCGGCTAAAATACGAGCCCGGCAAAGC
AAGCTTTCTAGACC
BO17433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33756-PA | 585 | gdl-RA | 1..582 | 17..598 | 2860 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:52:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gdl-ORF39-RA | 965 | CG33755-RA | 292..873 | 17..598 | 2880 | 99.7 | Plus |
gdl-RB | 1175 | CG33756-RB | 292..873 | 17..598 | 2880 | 99.7 | Plus |
gdl-RC | 1022 | CG33756-RC | 139..720 | 17..598 | 2880 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15509937..15510233 | 163..459 | 1470 | 99.7 | Plus |
3L | 28110227 | 3L | 15509736..15509881 | 17..162 | 730 | 100 | Plus |
3L | 28110227 | 3L | 15510603..15510745 | 456..598 | 700 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:52:33 has no hits.
BO17433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:07 Download gff for
BO17433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33756-PA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:43 Download gff for
BO17433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-ORF39-RA | 282..876 | 5..602 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:13 Download gff for
BO17433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-RC | 129..723 | 5..602 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:13 Download gff for
BO17433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15510605..15510748 | 458..602 | 97 | | Plus |
3L | 15509736..15509881 | 17..162 | 100 | -> | Plus |
3L | 15509937..15510231 | 163..457 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:43 Download gff for
BO17433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15503705..15503848 | 458..602 | 97 | | Plus |
arm_3L | 15502836..15502981 | 17..162 | 100 | -> | Plus |
arm_3L | 15503037..15503331 | 163..457 | 99 | -> | Plus |
BO17433.3prime Sequence
614 bp (614 high quality bases) assembled on 2006-10-13
> BO17433.3prime
ATGGTCTAGAAAGCTTGCTTTGCCGGGCTCGTATTTTAGCCGGCTCAAAC
GCAAAATGAAGTCCAACAGGAACATTTGTATTTTTATCTCCTTTGGATTC
TCGGTGACATAGAAGCCGGGAACGCCGGCCTTTTGAAGTGTGGATTGTTG
GTCATTAACCTTTTGATCTAGTATTTCGATAATCTTCGTATCCGACTCGT
GTAGTTTCTTAGTGTGCTTTATTTTCATGAGTCCCAAAATGTGGCGCAAC
TCCTCGGGATCCTTGATCTTGCTCCTCCACTCGGCCACTTCTATTTCATA
CTCGTTCTCCGCCTGCATCCGTATTTTAATCAAGTGTCTTTCGGTTTCGT
GTTGCAGCTCCATTAATGCTTTTACTATTACAAAAATGCCATCGTTTAGC
ACACAATTGGCGAGTTCGGTGAGTAGATCGTAGGAAATGCGTGTCTGCAA
GTTTTCGGGAAGTTCCGAATGGTAAGTTCGCAATTGGTCCACCAAAAAAT
AGATTTTGCGTTGTAAAAACTCCGGAGTTGGCTGCTGATACTCCACTACT
GCCTCACTAGTGTTCGCACTACCTTCGCTGGTTGCCGGTATGTCCGCCAT
GTCGACTGATAACT
BO17433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33756-PA | 585 | gdl-RA | 1..582 | 600..19 | 2860 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gdl-ORF39-RA | 965 | CG33755-RA | 292..873 | 600..19 | 2880 | 99.7 | Minus |
gdl-RB | 1175 | CG33756-RB | 292..873 | 600..19 | 2880 | 99.7 | Minus |
gdl-RC | 1022 | CG33756-RC | 139..720 | 600..19 | 2880 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15509937..15510233 | 454..158 | 1470 | 99.7 | Minus |
3L | 28110227 | 3L | 15509736..15509881 | 600..455 | 730 | 100 | Minus |
3L | 28110227 | 3L | 15510603..15510745 | 161..19 | 700 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:28:00 has no hits.
BO17433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:06 Download gff for
BO17433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33756-PA | 1..585 | 15..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:59 Download gff for
BO17433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-ORF39-RA | 282..876 | 15..612 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:45 Download gff for
BO17433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-RC | 129..723 | 15..612 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:45 Download gff for
BO17433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15509726..15509881 | 455..612 | 96 | -> | Minus |
3L | 15509937..15510231 | 160..454 | 99 | -> | Minus |
3L | 15510605..15510748 | 15..159 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:59 Download gff for
BO17433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15502826..15502981 | 455..612 | 96 | -> | Minus |
arm_3L | 15503037..15503331 | 160..454 | 99 | -> | Minus |
arm_3L | 15503705..15503848 | 15..159 | 97 | | Minus |
BO17433.complete Sequence
616 bp assembled on 2006-10-11
GenBank Submission: FJ634117
> BO17433.complete
GAAGTTATCAGTCGACATGGCGGACATACCGGCAACCAGCGAAGGTAGTG
CGAACACTAGTGAGGCAGTAGTGGAGTATCAGCAGCCAACTCCGGAGTTT
TTACAACGCAAAATCTATTTTTTGGTGGACCAATTGCGAACTTACCATTC
GGAACTTCCCGAAAACTTGCAGACACGCATTTCCTACGATCTACTCACCG
AACTCGCCAATTGTGTGCTAAACGATGGCATTTTTGTAATAGTAAAAGCA
TTAATGGAGCTGCAACACGAAACCGAAAGACACTTGATTAAAATACGGAT
GCAGGCGGAGAACGAGTATGAAATAGAAGTGGCCGAGTGGAGGAGCAAGA
TCAAGGATCCCGAGGAGTTGCGCCACATTTTGGGACTCATGAAAATAAAG
CACACTAAGAAACTACACGAGTCGGATACGAAGATTATCGAAATACTAGA
TCAAAAGGTTAATGACCAACAATCCACACTTCAAAAGGCCGGCGTTCCCG
GCTTCTATGTCACCGAGAATCCAAAGGAGATAAAAATACAAATGTTCCTG
TTGGACTTCATTTTGCGTTTGAGCCGGCTAAAATACGAGCCCGGCAAAGC
AAGCTTTCTAGACCAT
BO17433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gdl-RB | 585 | CG33756-PB | 1..582 | 17..598 | 2880 | 99.7 | Plus |
gdl-RC | 585 | CG33756-PC | 1..582 | 17..598 | 2880 | 99.7 | Plus |
gdl-RA | 585 | CG33756-PA | 1..582 | 17..598 | 2880 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gdl-ORF39-RA | 965 | CG33755-RA | 292..873 | 17..598 | 2880 | 99.7 | Plus |
gdl-RB | 1175 | CG33756-RB | 292..873 | 17..598 | 2880 | 99.7 | Plus |
gdl-RC | 1022 | CG33756-RC | 139..720 | 17..598 | 2880 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15509937..15510233 | 163..459 | 1470 | 99.7 | Plus |
3L | 28110227 | 3L | 15509736..15509881 | 17..162 | 730 | 100 | Plus |
3L | 28110227 | 3L | 15510603..15510745 | 456..598 | 700 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:46:09 has no hits.
BO17433.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:58 Download gff for
BO17433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-RA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:58 Download gff for
BO17433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-ORF39-RA | 282..876 | 5..602 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:09 Download gff for
BO17433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-ORF39-RA | 292..873 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:58 Download gff for
BO17433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-ORF39-RA | 282..876 | 5..602 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:49 Download gff for
BO17433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-RC | 139..720 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:49 Download gff for
BO17433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15510605..15510745 | 458..600 | 97 | | Plus |
3L | 15509736..15509881 | 17..162 | 100 | -> | Plus |
3L | 15509937..15510231 | 163..457 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:09 Download gff for
BO17433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15502836..15502981 | 17..162 | 100 | -> | Plus |
arm_3L | 15503037..15503331 | 163..457 | 99 | -> | Plus |
arm_3L | 15503705..15503845 | 458..600 | 97 | | Plus |
BO17433.pep Sequence
Translation from 16 to 616
> BO17433.pep
MADIPATSEGSANTSEAVVEYQQPTPEFLQRKIYFLVDQLRTYHSELPEN
LQTRISYDLLTELANCVLNDGIFVIVKALMELQHETERHLIKIRMQAENE
YEIEVAEWRSKIKDPEELRHILGLMKIKHTKKLHESDTKIIEILDQKVND
QQSTLQKAGVPGFYVTENPKEIKIQMFLLDFILRLSRLKYEPGKASFLDH
BO17433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gdl-PB | 194 | CG33756-PB | 1..194 | 1..194 | 988 | 100 | Plus |
gdl-PC | 194 | CG33756-PC | 1..194 | 1..194 | 988 | 100 | Plus |
gdl-PA | 194 | CG33756-PA | 1..194 | 1..194 | 988 | 100 | Plus |