Clone Sequence Records
BO17435.3prime Sequence
695 bp (672 high quality bases) assembled on 2006-10-13
> BO17435.3prime
ATGGTCTAGAAAGCTTGCGATGTTTTTCTGTTTCCTTTTCTTGGGTCGAA
TATAGGCATGAAAATAGAAGTTGCTAAATAAGATGATGAACACAACGGAG
ATGCTGCCGGCACAGGTCGCCGAGAACCGGGCTGATGGACAGTCCGGTTG
CTTTAGGGTGTAGATACTATGCCCCAGAACGATTCCAAACTGGATGAGCT
GAACGATAGTGATGTACTTCTTCCACCACAGATCGCCCTTCGAATCGCGA
TTGAGCGACGACTGATAGTAGTAGCTGTACATCATGATGTGCACGACGAC
GTTGAAGAAGCACATAAAGAACCCATGACCACCGTATCCGTAGTAGTACA
GATACATAAAGCTGAAGTACAGCATGTACATGTGATGGAAGACGTGCAGA
AAGGATATCTGGCGATCCTTCTTTCGCAGCACAAAGAAGACCGTCTCCAG
CAGATCGAGCAGCTTATTGAAGAAGTACGAGTACGTAAGCCAGCGCTCCC
AGGTCTTGTACTCATGATCCGGCGGCAGGTTCTTGATGCACTTAAAGTTA
TAGTCTCCGGGTCCCAGCATGAAGTGGACAGCAAAAAAGCACATGATGAC
ATTGTACACGATCTGCATGATGTTGTACGCCTTTATCAGACCGCGAAGGT
CAAAGGGCTTTCGATTCCGCATGATCTTTGGACCCGCTATCTTTA
BO17435.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-PA | 795 | CG9458-RA | 116..792 | 695..19 | 3385 | 100 | Minus |
CG8534-PA | 798 | CG8534-RA | 352..422 | 456..386 | 255 | 94.3 | Minus |
CG9459-PA | 798 | CG9459-RA | 504..563 | 307..248 | 150 | 90 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-RA | 900 | CG9458-RA | 126..802 | 695..19 | 3385 | 100 | Minus |
CG9459-RA | 901 | CG9459-RA | 213..654 | 627..186 | 845 | 79.4 | Minus |
CG8534-RA | 990 | CG8534-RA | 326..484 | 540..382 | 390 | 83 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9819012..9819575 | 19..582 | 2820 | 100 | Plus |
3R | 32079331 | 3R | 9817675..9818069 | 186..580 | 790 | 80 | Plus |
3R | 32079331 | 3R | 9819639..9819752 | 582..695 | 570 | 100 | Plus |
3R | 32079331 | 3R | 9813275..9813433 | 540..382 | 390 | 83 | Minus |
3R | 32079331 | 3R | 22555525..22555602 | 458..381 | 180 | 82.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:54:12 has no hits.
BO17435.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:10 Download gff for
BO17435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-PA | 117..795 | 15..694 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:40 Download gff for
BO17435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 127..808 | 12..694 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:30 Download gff for
BO17435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 127..808 | 12..694 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:30 Download gff for
BO17435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9819006..9819575 | 12..582 | 99 | <- | Plus |
3R | 9819640..9819751 | 583..694 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:40 Download gff for
BO17435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5644728..5645297 | 12..582 | 99 | <- | Plus |
arm_3R | 5645362..5645473 | 583..694 | 100 | | Plus |
BO17435.5prime Sequence
671 bp (639 high quality bases) assembled on 2006-10-13
> BO17435.5prime
GAAGTTATCAGTCGACATGTTGGGTGATCTAGTGGACTTTTTGGGCAAAT
CCCCACCCGATCCTGTGCGCCTGCCACTCCTGGCCAGCCACAAGCCCGTC
CTGATGGTATTGGCCACCTACCTGTTCTTCGTAAAGATAGCGGGTCCAAA
GATCATGCGGAATCGAAAGCCCTTTGACCTTCGCGGTCTGATAAAGGCGT
ACAACATCATGCAGATCGTGTACAATGTCATCATGTGCTTTTTTGCTGTC
CACTTCATGCTGGGACCCGGAGACTATAACTTTAAGTGCATCAAGAACCT
GCCGCCGGATCATGAGTACAAGACCTGGGAGCGCTGGCTTACGTACTCGT
ACTTCTTCAATAAGCTGCTCGATCTGCTGGAGACGGTCTTCTTTGTGCTG
CGAAAGAAGGATCGCCAGATATCCTTTCTGCACGTCTTCCATCACATGTA
CATGCTGTACTTCAGCTTTATGTATCTGTACTACTACGGATACGGTGGTC
ATGGGTTCTTTATGTGCTTCTTCAACGTCGTCGTGCACATCATGATGTAC
AGCTACTACTATCAGTCGTCGCTCAATCGCGATTCGAAGGGCGATCTGTG
GTGGAAGAAGTACATCACTATCGTTCAGCTCATCCAGTTTGGAATCGTTC
TGGGGCATAGTATCTACACCC
BO17435.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-PA | 795 | CG9458-RA | 1..655 | 17..671 | 3275 | 100 | Plus |
CG8534-PA | 798 | CG8534-RA | 352..422 | 371..441 | 255 | 94.3 | Plus |
CG9459-PA | 798 | CG9459-RA | 504..563 | 520..579 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-RA | 900 | CG9458-RA | 11..665 | 17..671 | 3275 | 100 | Plus |
CG9459-RA | 901 | CG9459-RA | 213..654 | 200..641 | 845 | 79.4 | Plus |
CG8534-RA | 990 | CG8534-RA | 326..484 | 287..445 | 390 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9819149..9819575 | 671..245 | 2135 | 100 | Minus |
3R | 32079331 | 3R | 9819639..9819867 | 245..17 | 1145 | 100 | Minus |
3R | 32079331 | 3R | 9817675..9818069 | 641..247 | 790 | 80 | Minus |
3R | 32079331 | 3R | 9813275..9813433 | 287..445 | 390 | 83 | Plus |
3R | 32079331 | 3R | 22555525..22555602 | 369..446 | 180 | 82.1 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:07:06 has no hits.
BO17435.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:10 Download gff for
BO17435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-PA | 1..655 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:14 Download gff for
BO17435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 3..665 | 9..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:31 Download gff for
BO17435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 3..665 | 9..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:31 Download gff for
BO17435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9819149..9819575 | 245..671 | 100 | <- | Minus |
3R | 9819640..9819875 | 9..244 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:14 Download gff for
BO17435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5644871..5645297 | 245..671 | 100 | <- | Minus |
arm_3R | 5645362..5645597 | 9..244 | 98 | | Minus |
BO17435.complete Sequence
826 bp assembled on 2006-10-11
GenBank Submission: FJ634118
> BO17435.complete
GAAGTTATCAGTCGACATGTTGGGTGATCTAGTGGACTTTTTGGGCAAAT
CCCCACCCGATCCTGTGCGCCTGCCACTCCTGGCCAGCCACAAGCCCGTC
CTGATGGTATTGGCCACCTACCTGTTCTTCGTAAAGATAGCGGGTCCAAA
GATCATGCGGAATCGAAAGCCCTTTGACCTTCGCGGTCTGATAAAGGCGT
ACAACATCATGCAGATCGTGTACAATGTCATCATGTGCTTTTTTGCTGTC
CACTTCATGCTGGGACCCGGAGACTATAACTTTAAGTGCATCAAGAACCT
GCCGCCGGATCATGAGTACAAGACCTGGGAGCGCTGGCTTACGTACTCGT
ACTTCTTCAATAAGCTGCTCGATCTGCTGGAGACGGTCTTCTTTGTGCTG
CGAAAGAAGGATCGCCAGATATCCTTTCTGCACGTCTTCCATCACATGTA
CATGCTGTACTTCAGCTTTATGTATCTGTACTACTACGGATACGGTGGTC
ATGGGTTCTTTATGTGCTTCTTCAACGTCGTCGTGCACATCATGATGTAC
AGCTACTACTATCAGTCGTCGCTCAATCGCGATTCGAAGGGCGATCTGTG
GTGGAAGAAGTACATCACTATCGTTCAGCTCATCCAGTTTGGAATCGTTC
TGGGGCATAGTATCTACACCCTAAAGCAACCGGACTGTCCATCAGCCCGG
TTCTCGGCGACCTGTGCCGGCAGCATCTCCGTTGTGTTCATCATCTTATT
TAGCAACTTCTATTTTCATGCCTATATTCGACCCAAGAAAAGGAAACAGA
AAAACATCGCAAGCTTTCTAGACCAT
BO17435.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-RA | 795 | CG9458-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
CG9459-RA | 798 | CG9459-PA | 184..625 | 200..641 | 845 | 79.4 | Plus |
CG8534-RA | 798 | CG8534-PA | 268..426 | 287..445 | 390 | 83 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-RA | 900 | CG9458-RA | 11..802 | 17..808 | 3960 | 100 | Plus |
CG9459-RA | 901 | CG9459-RA | 213..654 | 200..641 | 845 | 79.4 | Plus |
CG8534-RA | 990 | CG8534-RA | 326..484 | 287..445 | 390 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9819012..9819575 | 808..245 | 2820 | 100 | Minus |
3R | 32079331 | 3R | 9819639..9819867 | 245..17 | 1145 | 100 | Minus |
3R | 32079331 | 3R | 9817675..9818069 | 641..247 | 790 | 80 | Minus |
3R | 32079331 | 3R | 9813275..9813433 | 287..445 | 390 | 83 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:51:28 has no hits.
BO17435.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:42 Download gff for
BO17435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:16 Download gff for
BO17435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 3..808 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:32 Download gff for
BO17435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 16..802 | 22..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:04 Download gff for
BO17435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 16..802 | 22..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:04 Download gff for
BO17435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9819010..9819575 | 245..810 | 99 | <- | Minus |
3R | 9819640..9819862 | 22..244 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:32 Download gff for
BO17435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5644732..5645297 | 245..810 | 99 | <- | Minus |
arm_3R | 5645362..5645584 | 22..244 | 100 | | Minus |
BO17435.pep Sequence
Translation from 16 to 826
> BO17435.pep
MLGDLVDFLGKSPPDPVRLPLLASHKPVLMVLATYLFFVKIAGPKIMRNR
KPFDLRGLIKAYNIMQIVYNVIMCFFAVHFMLGPGDYNFKCIKNLPPDHE
YKTWERWLTYSYFFNKLLDLLETVFFVLRKKDRQISFLHVFHHMYMLYFS
FMYLYYYGYGGHGFFMCFFNVVVHIMMYSYYYQSSLNRDSKGDLWWKKYI
TIVQLIQFGIVLGHSIYTLKQPDCPSARFSATCAGSISVVFIILFSNFYF
HAYIRPKKRKQKNIASFLDH
BO17435.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-PA | 264 | CG9458-PA | 1..264 | 1..264 | 1436 | 100 | Plus |
CG9459-PA | 265 | CG9459-PA | 1..260 | 1..260 | 1025 | 69.6 | Plus |
CG8534-PA | 265 | CG8534-PA | 14..264 | 15..266 | 711 | 54 | Plus |
eloF-PA | 257 | CG16905-PA | 3..253 | 12..262 | 679 | 49.4 | Plus |
CG16904-PA | 262 | CG16904-PA | 11..258 | 15..262 | 645 | 46 | Plus |