Clone BO17435 Report

Search the DGRC for BO17435

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG9458-RA
Protein status:BO17435.pep: validated full length
Sequenced Size:826

Clone Sequence Records

BO17435.3prime Sequence

695 bp (672 high quality bases) assembled on 2006-10-13

> BO17435.3prime
ATGGTCTAGAAAGCTTGCGATGTTTTTCTGTTTCCTTTTCTTGGGTCGAA
TATAGGCATGAAAATAGAAGTTGCTAAATAAGATGATGAACACAACGGAG
ATGCTGCCGGCACAGGTCGCCGAGAACCGGGCTGATGGACAGTCCGGTTG
CTTTAGGGTGTAGATACTATGCCCCAGAACGATTCCAAACTGGATGAGCT
GAACGATAGTGATGTACTTCTTCCACCACAGATCGCCCTTCGAATCGCGA
TTGAGCGACGACTGATAGTAGTAGCTGTACATCATGATGTGCACGACGAC
GTTGAAGAAGCACATAAAGAACCCATGACCACCGTATCCGTAGTAGTACA
GATACATAAAGCTGAAGTACAGCATGTACATGTGATGGAAGACGTGCAGA
AAGGATATCTGGCGATCCTTCTTTCGCAGCACAAAGAAGACCGTCTCCAG
CAGATCGAGCAGCTTATTGAAGAAGTACGAGTACGTAAGCCAGCGCTCCC
AGGTCTTGTACTCATGATCCGGCGGCAGGTTCTTGATGCACTTAAAGTTA
TAGTCTCCGGGTCCCAGCATGAAGTGGACAGCAAAAAAGCACATGATGAC
ATTGTACACGATCTGCATGATGTTGTACGCCTTTATCAGACCGCGAAGGT
CAAAGGGCTTTCGATTCCGCATGATCTTTGGACCCGCTATCTTTA

BO17435.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-PA 795 CG9458-RA 116..792 695..19 3385 100 Minus
CG8534-PA 798 CG8534-RA 352..422 456..386 255 94.3 Minus
CG9459-PA 798 CG9459-RA 504..563 307..248 150 90 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-RA 900 CG9458-RA 126..802 695..19 3385 100 Minus
CG9459-RA 901 CG9459-RA 213..654 627..186 845 79.4 Minus
CG8534-RA 990 CG8534-RA 326..484 540..382 390 83 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9819012..9819575 19..582 2820 100 Plus
3R 32079331 3R 9817675..9818069 186..580 790 80 Plus
3R 32079331 3R 9819639..9819752 582..695 570 100 Plus
3R 32079331 3R 9813275..9813433 540..382 390 83 Minus
3R 32079331 3R 22555525..22555602 458..381 180 82.1 Minus
Blast to na_te.dros performed on 2015-02-10 21:54:12 has no hits.

BO17435.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:10 Download gff for BO17435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9458-PA 117..795 15..694 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:40 Download gff for BO17435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 127..808 12..694 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:30 Download gff for BO17435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 127..808 12..694 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:30 Download gff for BO17435.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9819006..9819575 12..582 99 <- Plus
3R 9819640..9819751 583..694 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:40 Download gff for BO17435.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5644728..5645297 12..582 99 <- Plus
arm_3R 5645362..5645473 583..694 100   Plus

BO17435.5prime Sequence

671 bp (639 high quality bases) assembled on 2006-10-13

> BO17435.5prime
GAAGTTATCAGTCGACATGTTGGGTGATCTAGTGGACTTTTTGGGCAAAT
CCCCACCCGATCCTGTGCGCCTGCCACTCCTGGCCAGCCACAAGCCCGTC
CTGATGGTATTGGCCACCTACCTGTTCTTCGTAAAGATAGCGGGTCCAAA
GATCATGCGGAATCGAAAGCCCTTTGACCTTCGCGGTCTGATAAAGGCGT
ACAACATCATGCAGATCGTGTACAATGTCATCATGTGCTTTTTTGCTGTC
CACTTCATGCTGGGACCCGGAGACTATAACTTTAAGTGCATCAAGAACCT
GCCGCCGGATCATGAGTACAAGACCTGGGAGCGCTGGCTTACGTACTCGT
ACTTCTTCAATAAGCTGCTCGATCTGCTGGAGACGGTCTTCTTTGTGCTG
CGAAAGAAGGATCGCCAGATATCCTTTCTGCACGTCTTCCATCACATGTA
CATGCTGTACTTCAGCTTTATGTATCTGTACTACTACGGATACGGTGGTC
ATGGGTTCTTTATGTGCTTCTTCAACGTCGTCGTGCACATCATGATGTAC
AGCTACTACTATCAGTCGTCGCTCAATCGCGATTCGAAGGGCGATCTGTG
GTGGAAGAAGTACATCACTATCGTTCAGCTCATCCAGTTTGGAATCGTTC
TGGGGCATAGTATCTACACCC

BO17435.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-PA 795 CG9458-RA 1..655 17..671 3275 100 Plus
CG8534-PA 798 CG8534-RA 352..422 371..441 255 94.3 Plus
CG9459-PA 798 CG9459-RA 504..563 520..579 150 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-RA 900 CG9458-RA 11..665 17..671 3275 100 Plus
CG9459-RA 901 CG9459-RA 213..654 200..641 845 79.4 Plus
CG8534-RA 990 CG8534-RA 326..484 287..445 390 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9819149..9819575 671..245 2135 100 Minus
3R 32079331 3R 9819639..9819867 245..17 1145 100 Minus
3R 32079331 3R 9817675..9818069 641..247 790 80 Minus
3R 32079331 3R 9813275..9813433 287..445 390 83 Plus
3R 32079331 3R 22555525..22555602 369..446 180 82.1 Plus
Blast to na_te.dros performed on 2015-01-30 18:07:06 has no hits.

BO17435.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:10 Download gff for BO17435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9458-PA 1..655 17..671 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:14 Download gff for BO17435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 3..665 9..671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:31 Download gff for BO17435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 3..665 9..671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:31 Download gff for BO17435.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9819149..9819575 245..671 100 <- Minus
3R 9819640..9819875 9..244 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:14 Download gff for BO17435.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5644871..5645297 245..671 100 <- Minus
arm_3R 5645362..5645597 9..244 98   Minus

BO17435.complete Sequence

826 bp assembled on 2006-10-11

GenBank Submission: FJ634118

> BO17435.complete
GAAGTTATCAGTCGACATGTTGGGTGATCTAGTGGACTTTTTGGGCAAAT
CCCCACCCGATCCTGTGCGCCTGCCACTCCTGGCCAGCCACAAGCCCGTC
CTGATGGTATTGGCCACCTACCTGTTCTTCGTAAAGATAGCGGGTCCAAA
GATCATGCGGAATCGAAAGCCCTTTGACCTTCGCGGTCTGATAAAGGCGT
ACAACATCATGCAGATCGTGTACAATGTCATCATGTGCTTTTTTGCTGTC
CACTTCATGCTGGGACCCGGAGACTATAACTTTAAGTGCATCAAGAACCT
GCCGCCGGATCATGAGTACAAGACCTGGGAGCGCTGGCTTACGTACTCGT
ACTTCTTCAATAAGCTGCTCGATCTGCTGGAGACGGTCTTCTTTGTGCTG
CGAAAGAAGGATCGCCAGATATCCTTTCTGCACGTCTTCCATCACATGTA
CATGCTGTACTTCAGCTTTATGTATCTGTACTACTACGGATACGGTGGTC
ATGGGTTCTTTATGTGCTTCTTCAACGTCGTCGTGCACATCATGATGTAC
AGCTACTACTATCAGTCGTCGCTCAATCGCGATTCGAAGGGCGATCTGTG
GTGGAAGAAGTACATCACTATCGTTCAGCTCATCCAGTTTGGAATCGTTC
TGGGGCATAGTATCTACACCCTAAAGCAACCGGACTGTCCATCAGCCCGG
TTCTCGGCGACCTGTGCCGGCAGCATCTCCGTTGTGTTCATCATCTTATT
TAGCAACTTCTATTTTCATGCCTATATTCGACCCAAGAAAAGGAAACAGA
AAAACATCGCAAGCTTTCTAGACCAT

BO17435.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-RA 795 CG9458-PA 1..792 17..808 3960 100 Plus
CG9459-RA 798 CG9459-PA 184..625 200..641 845 79.4 Plus
CG8534-RA 798 CG8534-PA 268..426 287..445 390 83 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-RA 900 CG9458-RA 11..802 17..808 3960 100 Plus
CG9459-RA 901 CG9459-RA 213..654 200..641 845 79.4 Plus
CG8534-RA 990 CG8534-RA 326..484 287..445 390 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9819012..9819575 808..245 2820 100 Minus
3R 32079331 3R 9819639..9819867 245..17 1145 100 Minus
3R 32079331 3R 9817675..9818069 641..247 790 80 Minus
3R 32079331 3R 9813275..9813433 287..445 390 83 Plus
Blast to na_te.dros performed on 2014-11-26 16:51:28 has no hits.

BO17435.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:42 Download gff for BO17435.complete
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 1..795 17..812 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:16 Download gff for BO17435.complete
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 3..808 9..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:32 Download gff for BO17435.complete
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 16..802 22..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:04 Download gff for BO17435.complete
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 16..802 22..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:04 Download gff for BO17435.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9819010..9819575 245..810 99 <- Minus
3R 9819640..9819862 22..244 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:32 Download gff for BO17435.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5644732..5645297 245..810 99 <- Minus
arm_3R 5645362..5645584 22..244 100   Minus

BO17435.pep Sequence

Translation from 16 to 826

> BO17435.pep
MLGDLVDFLGKSPPDPVRLPLLASHKPVLMVLATYLFFVKIAGPKIMRNR
KPFDLRGLIKAYNIMQIVYNVIMCFFAVHFMLGPGDYNFKCIKNLPPDHE
YKTWERWLTYSYFFNKLLDLLETVFFVLRKKDRQISFLHVFHHMYMLYFS
FMYLYYYGYGGHGFFMCFFNVVVHIMMYSYYYQSSLNRDSKGDLWWKKYI
TIVQLIQFGIVLGHSIYTLKQPDCPSARFSATCAGSISVVFIILFSNFYF
HAYIRPKKRKQKNIASFLDH

BO17435.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-PA 264 CG9458-PA 1..264 1..264 1436 100 Plus
CG9459-PA 265 CG9459-PA 1..260 1..260 1025 69.6 Plus
CG8534-PA 265 CG8534-PA 14..264 15..266 711 54 Plus
eloF-PA 257 CG16905-PA 3..253 12..262 679 49.4 Plus
CG16904-PA 262 CG16904-PA 11..258 15..262 645 46 Plus