Clone Sequence Records
BO17436.3prime Sequence
734 bp (665 high quality bases) assembled on 2006-10-13
> BO17436.3prime
ATGGTCTAGAAAGCTTGCGACTACAAAGAGCTGTTCGAGCGGCAGTTTGC
CAAAGATCCTGTCCACCACCGACTTGGCTATCAGTCCGAAGGCCTCGCCA
ATGCCCGGTTTCAGTTCATTGAAGATGTCCTTCCAGTTCTCATTGATAAG
CGCGTGCATGTTCTCGCTGAGATCTTTCTGGCCGTTGAACAGATTTTCCA
GCTGGTAGGTCACATGGGATGGATCCAGCTCAACCTTTATGTTCATCACC
TCGGCGTAGGTTTGATGATCGCCCTTGGAGACGCGCTTCAATTTGATCTG
TGCACGTACCTTTGTTCTAGTGAGGCGTATGTCAGCAATGCCATTTCCGG
TGATGGGCAGAATGAGTATTCTTCCGTCCACCGAGTAGGGTCCTCTGACT
CCTATTTCTGGAACTTCCATGACCAGCTCGATGGAGCGGCTGAGATCCCT
TGTGAATCCGCTCACTCGCTTCGCAACTCCCTGATGCAGACCCAAGATGT
CCATCTCGTGGAAGCTGAGATCGATGTTGACCGGACTGTGCGGATTGCGT
CCGATTTTGAACTTCTTGACGTGCAGCGGATCGAGGGGGATCAAGCCCAG
CTCCTTGATACCGCTTTTGGCGTAGTTCCTGAGCACGAAGTTCACCCTGT
CCTCCAGGCACTGCTCGTCCATTATGGCGCACCTCTCGATGCCCGAGGGG
AAATCGGAGGCGTGTCCGTAGGTGGACGCACATC
BO17436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11854-PA | 753 | CG11854-RA | 35..750 | 734..19 | 3580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11854-RB | 1039 | CG11854-RB | 73..788 | 734..19 | 3580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25242710..25243011 | 320..19 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 25242204..25242441 | 698..461 | 1190 | 100 | Minus |
| 3R | 32079331 | 3R | 25242506..25242647 | 462..321 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 25242092..25242127 | 734..699 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:22:55 has no hits.
BO17436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:12 Download gff for
BO17436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11854-PA | 35..753 | 15..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:17 Download gff for
BO17436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11854-RB | 73..797 | 10..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:32 Download gff for
BO17436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11854-RB | 73..797 | 10..734 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:32 Download gff for
BO17436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25242092..25242127 | 699..734 | 100 | -> | Minus |
| 3R | 25242204..25242441 | 461..698 | 100 | -> | Minus |
| 3R | 25242508..25242647 | 321..460 | 100 | -> | Minus |
| 3R | 25242710..25243020 | 10..320 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:17 Download gff for
BO17436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21067814..21067849 | 699..734 | 100 | -> | Minus |
| arm_3R | 21067926..21068163 | 461..698 | 100 | -> | Minus |
| arm_3R | 21068230..21068369 | 321..460 | 100 | -> | Minus |
| arm_3R | 21068432..21068742 | 10..320 | 98 | | Minus |
BO17436.5prime Sequence
714 bp (650 high quality bases) assembled on 2006-10-13
> BO17436.5prime
GAAGTTATCAGTCGACATGGAGCTAACTCTCGCCCTCGTCCTGCTGTTCG
GATGTGCGTCCACCTACGGACACGCCTCCGATTTCCCCTCGGGCATCGAG
AGGTGCGCCATAATGGACGAGCAGTGCCTGGAGGACAGGGTGAACTTCGT
GCTCAGGAACTACGCCAAAAGCGGTATCAAGGAGCTGGGCTTGATCCCCC
TCGATCCGCTGCACGTCAAGAAGTTCAAAATCGGACGCAATCCGCACAGT
CCGGTCAACATCGATCTCAGCTTCCACGAGATGGACATCTTGGGTCTGCA
TCAGGGAGTTGCGAAGCGAGTGAGCGGATTCACAAGGGATCTCAGCCGCT
CCATCGAGCTGGTCATGGAAGTTCCAGAAATAGGAGTCAGAGGACCCTAC
TCGGTGGACGGAAGAATACTCATTCTGCCCATCACCGGAAATGGCATTGC
TGACATACGCCTCACTAGAACAAAGGTACGTGCACAGATCAAATTGAAGC
GCGTCTCCAAGGGCGATCATCAAACCTACGCCGAGGTGATGAACATAAAG
GTTGAGCTGGATCCATCCCATGTGACCTACCAGCTGGAAAATCTGTTCAA
CGGCCAGAAAGATCTCAGCGAGAACATGCACGCGCTTATCAATGAGAACT
GGAAAGACATCTTCAATGAACTGAAACCGGGCATTGGCGAGGCCTTCGGA
CTGGTAGCCAAGTC
BO17436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11854-PA | 753 | CG11854-RA | 1..698 | 17..714 | 3440 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11854-RB | 1039 | CG11854-RB | 39..736 | 17..714 | 3460 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25242710..25242959 | 465..714 | 1220 | 99.2 | Plus |
| 3R | 32079331 | 3R | 25242204..25242441 | 87..324 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 25242506..25242647 | 323..464 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 25242058..25242127 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:43:36 has no hits.
BO17436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:12 Download gff for
BO17436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11854-PA | 1..698 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:43 Download gff for
BO17436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11854-RB | 31..736 | 9..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:16 Download gff for
BO17436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11854-RB | 31..736 | 9..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:16 Download gff for
BO17436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25242050..25242127 | 9..86 | 94 | -> | Plus |
| 3R | 25242204..25242441 | 87..324 | 100 | -> | Plus |
| 3R | 25242508..25242647 | 325..464 | 100 | -> | Plus |
| 3R | 25242710..25242959 | 465..714 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:43 Download gff for
BO17436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21067772..21067849 | 9..86 | 94 | -> | Plus |
| arm_3R | 21067926..21068163 | 87..324 | 100 | -> | Plus |
| arm_3R | 21068230..21068369 | 325..464 | 100 | -> | Plus |
| arm_3R | 21068432..21068681 | 465..714 | 99 | | Plus |
BO17436.complete Sequence
784 bp assembled on 2006-10-11
GenBank Submission: FJ634119
> BO17436.complete
GAAGTTATCAGTCGACATGGAGCTAACTCTCGCCCTCGTCCTGCTGTTCG
GATGTGCGTCCACCTACGGACACGCCTCCGATTTCCCCTCGGGCATCGAG
AGGTGCGCCATAATGGACGAGCAGTGCCTGGAGGACAGGGTGAACTTCGT
GCTCAGGAACTACGCCAAAAGCGGTATCAAGGAGCTGGGCTTGATCCCCC
TCGATCCGCTGCACGTCAAGAAGTTCAAAATCGGACGCAATCCGCACAGT
CCGGTCAACATCGATCTCAGCTTCCACGAGATGGACATCTTGGGTCTGCA
TCAGGGAGTTGCGAAGCGAGTGAGCGGATTCACAAGGGATCTCAGCCGCT
CCATCGAGCTGGTCATGGAAGTTCCAGAAATAGGAGTCAGAGGACCCTAC
TCGGTGGACGGAAGAATACTCATTCTGCCCATCACCGGAAATGGCATTGC
TGACATACGCCTCACTAGAACAAAGGTACGTGCACAGATCAAATTGAAGC
GCGTCTCCAAGGGCGATCATCAAACCTACGCCGAGGTGATGAACATAAAG
GTTGAGCTGGATCCATCCCATGTGACCTACCAGCTGGAAAATCTGTTCAA
CGGCCAGAAAGATCTCAGCGAGAACATGCACGCGCTTATCAATGAGAACT
GGAAGGACATCTTCAATGAACTGAAACCGGGCATTGGCGAGGCCTTCGGA
CTGATAGCCAAGTCGGTGGTGGACAGGATCTTTGGCAAACTGCCGCTCGA
ACAGCTCTTTGTAGTCGCAAGCTTTCTAGACCAT
BO17436.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11854-RB | 753 | CG11854-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11854-RB | 1039 | CG11854-RB | 39..788 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25242710..25243011 | 465..766 | 1510 | 100 | Plus |
| 3R | 32079331 | 3R | 25242204..25242441 | 87..324 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 25242506..25242647 | 323..464 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 25242058..25242127 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:14:56 has no hits.
BO17436.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:01 Download gff for
BO17436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11854-RA | 2..762 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:00 Download gff for
BO17436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11854-RA | 2..768 | 9..775 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:47 Download gff for
BO17436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11854-RB | 39..788 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:02 Download gff for
BO17436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11854-RA | 2..768 | 9..775 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:49 Download gff for
BO17436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11854-RB | 39..788 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:49 Download gff for
BO17436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25242508..25242647 | 325..464 | 100 | -> | Plus |
| 3R | 25242710..25243011 | 465..768 | 99 | | Plus |
| 3R | 25242058..25242127 | 17..86 | 100 | -> | Plus |
| 3R | 25242204..25242441 | 87..324 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:47 Download gff for
BO17436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21068230..21068369 | 325..464 | 100 | -> | Plus |
| arm_3R | 21067780..21067849 | 17..86 | 100 | -> | Plus |
| arm_3R | 21067926..21068163 | 87..324 | 100 | -> | Plus |
| arm_3R | 21068432..21068733 | 465..768 | 99 | | Plus |
BO17436.pep Sequence
Translation from 16 to 784
> BO17436.pep
MELTLALVLLFGCASTYGHASDFPSGIERCAIMDEQCLEDRVNFVLRNYA
KSGIKELGLIPLDPLHVKKFKIGRNPHSPVNIDLSFHEMDILGLHQGVAK
RVSGFTRDLSRSIELVMEVPEIGVRGPYSVDGRILILPITGNGIADIRLT
RTKVRAQIKLKRVSKGDHQTYAEVMNIKVELDPSHVTYQLENLFNGQKDL
SENMHALINENWKDIFNELKPGIGEAFGLIAKSVVDRIFGKLPLEQLFVV
ASFLDH
BO17436.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11854-PB | 250 | CG11854-PB | 1..250 | 1..250 | 1284 | 100 | Plus |
| CG11852-PA | 250 | CG11852-PA | 2..248 | 1..249 | 371 | 34.4 | Plus |
| CG13618-PA | 252 | CG13618-PA | 6..251 | 3..249 | 327 | 32.4 | Plus |
| to-PB | 249 | CG11853-PB | 20..245 | 23..248 | 316 | 31.7 | Plus |
| to-PA | 249 | CG11853-PA | 20..245 | 23..248 | 316 | 31.7 | Plus |
