Clone Sequence Records
BO17438.3prime Sequence
687 bp (587 high quality bases) assembled on 2006-10-13
> BO17438.3prime
ATGGTCTAGAAAGCTTGCGTACGAGTGATCCCCGTACAGTGAATTCCCTT
GATAGCGATCCAGTCCGTTCAGGATTTTCTCCCGCCGCATTCGCTGTTGC
TGCCGTCGGCGCTGCCTGTAGAGATCCAGGAGAGCATTGCAGGTGTTCCT
GTCGAGTGCGTAACCGCGCGCTCCATTGGCCCTTATGGCGACAGTGGGTA
GGCGGTGAACCGACGACTTGTACAGCAAACTGCCGGTGCCGACCTTTTGC
TTGGCCTCCACGGCGGCGGATGCGGCGCGACAGGCCGCCTCCTTCACCTG
CTCGTACTCCGACTTAGCTTGCGCCACCTGGCGGGCCAGGCGGTCACCAC
GTGCCTTCGCCGCCGCCAGCATTTGGTTCTTCTCCTCGATATCCATGTTC
GACTGGTCGATTAGGCTGTCCATTTCCGACAAAATGCCACTCGTCTGCTG
TACGAGGGCCCTGAATGTTTCGGCTTGAACCTCCGCTGCTTTGACCACGG
CACAGGAGGCCTCCACGTTCGTCTCACTGTTCTGCAGCGAGCAGCTCACC
TGTCCGACCACCTCCTCGGCATCCCGGATCTCCCTAGCGTAGTTGTCCAC
CATTGCCTGTTTGCCCTCGAGCACCGCATCGGCGGCACGGGCAGCGGAGA
TGGCCTTTTCCGCCAGCTGCATCTTCGCCTGCCGCGA
BO17438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12985-PA | 1113 | CG12985-RA | 442..1110 | 687..19 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12985-RA | 1357 | CG12985-RA | 532..1200 | 687..19 | 3345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17884635..17885081 | 465..19 | 2235 | 100 | Minus |
X | 23542271 | X | 17884249..17884476 | 687..460 | 1140 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:40:54 has no hits.
BO17438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:13 Download gff for
BO17438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12985-PA | 443..1113 | 15..686 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:08:55 Download gff for
BO17438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12985-RA | 533..1203 | 15..686 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:25:50 Download gff for
BO17438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12985-RA | 533..1203 | 15..686 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:25:50 Download gff for
BO17438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17884250..17884475 | 461..686 | 100 | -> | Minus |
X | 17884640..17885084 | 15..460 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:08:55 Download gff for
BO17438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17778283..17778508 | 461..686 | 100 | -> | Minus |
arm_X | 17778673..17779117 | 15..460 | 99 | | Minus |
BO17438.5prime Sequence
652 bp (571 high quality bases) assembled on 2006-10-13
> BO17438.5prime
GAAGTTATCCGTCGACATGTATATATTTCCACCATATACCCTGCTCCTTA
TCATCCTCCGCATTGTGAGTGTCCGTGCGATGAGCTTCGACCAGCCCCAC
AACGAACACGACGCCTCCCTGGCTAGCTATTTGGACAACACCAACGATGA
CATATCTCCCCAGGGCTTCAACGGCGATGGGAATGGTAGTTCGGGGGCCA
CAGTGGTGCCATTCCCTTATCTGGGATGCACCACAAGACCGTCCTACCAA
TCTGGATGTGAAAGCATGGACGAAAGCGCTAGGGACCGAGAAAAAGATCG
CAATATTGATCGGGATCGAGGCCGAGATTGGGATCGAAATAGGGGTTGCG
ATAGAAACAGGGATCGGGACAAAGACAGGAATAATATTAGAGATAGGGAC
AACTGTGACTCCTGTGACGAGATTATCAATTCGCGGCTGAAGGCCACCCA
CATTGCCCAGAATGCCGCCCAGGTGGCCAAGGCAGCCAATGATGCACAGG
CGGCCGCCGCTCAAGATGCATCGCGGCAGGCGAAGATGCAGCTGGCGGAA
AAGGCCATCTCCGCTGCCCGTGCCGCCGATGCGGTGCTCGAAGGCAAACA
GGCAATGGTGGAAAACTACGCTAGGGAGATCCGGGATGCCAAGGAGGTGG
TC
BO17438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12985-PA | 1113 | CG12985-RA | 1..573 | 80..652 | 2790 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12985-RA | 1357 | CG12985-RA | 28..663 | 17..652 | 3135 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:41:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17883745..17884380 | 17..652 | 3135 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:41:05 has no hits.
BO17438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:14 Download gff for
BO17438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12985-PA | 1..573 | 80..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:08:58 Download gff for
BO17438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12985-RA | 23..663 | 12..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:26:18 Download gff for
BO17438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12985-RA | 23..663 | 12..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:26:18 Download gff for
BO17438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17883740..17884380 | 12..652 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:08:58 Download gff for
BO17438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17777773..17778413 | 12..652 | 99 | | Plus |
BO17438.complete Sequence
1207 bp assembled on 2008-08-14
GenBank Submission: FJ634120
> BO17438.complete
GAAGTTATCCGTCGACATGTATATATTTCCACCATATACCCTGCTCCTTA
TCATCCTCCGCATTGTGAGTGTCCGTGCGATGAGCTTCGACCAGCCCCAC
AACGAACACGACGCCTCCCTGGCTAGCTATTTGGACAACACCAACGATGA
CATATCTCCCCAGGGCTTCAACGGCGATGGGAATGGTAGTTCGGGGGCCA
CAGTGGTGCCATTCCCTTATCTGGGATGCACCACAAGACCGTCCTACCAA
TCTGGATGTGAAAGCATGGACGAAAGCGCTAGGGACCGAGAAAAAGATCG
CAATATTGATCGGGATCGAGGCCGAGATTGGGATCGAAATAGGGGTTGCG
ATAGAAACAGGGATCGGGACAAAGACAGGAATAATATTAGAGATAGGGAC
AACTGTGACTCCTGTGACGAGATTATCAATTCGCGGCTGAAGGCCACCCA
CATTGCCCAGAATGCCGCCCAGGTGGCCAAGGCAGCCAATGATGCACAGG
CGGCCGCCGCTCAAGATGCATCGCGGCAGGCGAAGATGCAGCTGGCGGAA
AAGGCCATCTCCGCTGCCCGTGCCGCCGATGCGGTGCTCGAGGGCAAACA
GGCAATGGTGGACAACTACGCTAGGGAGATCCGGGATGCCGAGGAGGTGG
TCGGACAGGTGAGCTGCTCGCTGCAGAACAGTGAGACGAACGTGGAGGCC
TCCTGTGCCGTGGTCAAAGCAGCGGAGGTTCAAGCCGAAACATTCAGGGC
CCTCGTACAGCAGACGAGTGGCATTTTGTCGGAAATGGACAGCCTAATCG
ACCAGTCGAACATGGATATCGAGGAGAAGAACCAAATGCTGGCGGCGGCG
AAGGCACGTGGTGACCGCCTGGCCCGCCAGGTGGCGCAAGCTAAGTCGGA
GTACGAGCAGGTGAAGGAGGCGGCCTGTCGCGCCGCATCCGCCGCCGTGG
AGGCCAAGCAAAAGGTCGGCACCGGCAGTTTGCTGTACAAGTCGTCGGTT
CACCGCCTACCCACTGTCGCCATAAGGGCCAATGGAGCGCGCGGTTACGC
ACTCGACAGGAACACCTGCAATGCTCTCCTGGATCTCTACAGGCAGCGCC
GACGGCAGCAACAGCGAATGCGGCGGGAGAAAATCCTGAACGGACTGGAT
CGCTATCAAGGGAATTCACTGTACGGGGATCACTCGTACGCAAGCTTTCT
AGACCAT
BO17438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12985-RA | 1113 | CG12985-PA | 1..1110 | 80..1189 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12985-RA | 1357 | CG12985-RA | 28..1200 | 17..1189 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17883745..17884476 | 17..748 | 3660 | 100 | Plus |
X | 23542271 | X | 17884635..17885081 | 743..1189 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:49:56 has no hits.
BO17438.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:33 Download gff for
BO17438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12985-RA | 23..1203 | 12..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:48 Download gff for
BO17438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12985-RA | 28..1200 | 17..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:46 Download gff for
BO17438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12985-RA | 28..1200 | 17..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:11 Download gff for
BO17438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12985-RA | 28..1200 | 17..1191 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:11 Download gff for
BO17438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17883745..17884475 | 17..747 | 100 | -> | Plus |
X | 17884640..17885081 | 748..1191 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:48 Download gff for
BO17438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17777778..17778508 | 17..747 | 100 | -> | Plus |
arm_X | 17778673..17779114 | 748..1191 | 99 | | Plus |
BO17438.pep Sequence
Translation from 16 to 1207
> BO17438.pep
MYIFPPYTLLLIILRIVSVRAMSFDQPHNEHDASLASYLDNTNDDISPQG
FNGDGNGSSGATVVPFPYLGCTTRPSYQSGCESMDESARDREKDRNIDRD
RGRDWDRNRGCDRNRDRDKDRNNIRDRDNCDSCDEIINSRLKATHIAQNA
AQVAKAANDAQAAAAQDASRQAKMQLAEKAISAARAADAVLEGKQAMVDN
YAREIRDAEEVVGQVSCSLQNSETNVEASCAVVKAAEVQAETFRALVQQT
SGILSEMDSLIDQSNMDIEEKNQMLAAAKARGDRLARQVAQAKSEYEQVK
EAACRAASAAVEAKQKVGTGSLLYKSSVHRLPTVAIRANGARGYALDRNT
CNALLDLYRQRRRQQQRMRREKILNGLDRYQGNSLYGDHSYASFLDH
BO17438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12985-PA | 370 | CG12985-PA | 1..370 | 22..391 | 1887 | 100 | Plus |
CG14840-PA | 300 | CG14840-PA | 87..261 | 142..316 | 360 | 44 | Plus |
CG14841-PA | 274 | CG14841-PA | 81..259 | 138..316 | 353 | 41.3 | Plus |
CG34459-PC | 305 | CG34459-PC | 120..296 | 142..318 | 336 | 42.9 | Plus |
CG34459-PB | 305 | CG34459-PB | 120..296 | 142..318 | 336 | 42.9 | Plus |