Clone BO17438 Report

Search the DGRC for BO17438

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:38
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO17438.pep: Imported from assembly
Sequenced Size:1207

Clone Sequence Records

BO17438.3prime Sequence

687 bp (587 high quality bases) assembled on 2006-10-13

> BO17438.3prime
ATGGTCTAGAAAGCTTGCGTACGAGTGATCCCCGTACAGTGAATTCCCTT
GATAGCGATCCAGTCCGTTCAGGATTTTCTCCCGCCGCATTCGCTGTTGC
TGCCGTCGGCGCTGCCTGTAGAGATCCAGGAGAGCATTGCAGGTGTTCCT
GTCGAGTGCGTAACCGCGCGCTCCATTGGCCCTTATGGCGACAGTGGGTA
GGCGGTGAACCGACGACTTGTACAGCAAACTGCCGGTGCCGACCTTTTGC
TTGGCCTCCACGGCGGCGGATGCGGCGCGACAGGCCGCCTCCTTCACCTG
CTCGTACTCCGACTTAGCTTGCGCCACCTGGCGGGCCAGGCGGTCACCAC
GTGCCTTCGCCGCCGCCAGCATTTGGTTCTTCTCCTCGATATCCATGTTC
GACTGGTCGATTAGGCTGTCCATTTCCGACAAAATGCCACTCGTCTGCTG
TACGAGGGCCCTGAATGTTTCGGCTTGAACCTCCGCTGCTTTGACCACGG
CACAGGAGGCCTCCACGTTCGTCTCACTGTTCTGCAGCGAGCAGCTCACC
TGTCCGACCACCTCCTCGGCATCCCGGATCTCCCTAGCGTAGTTGTCCAC
CATTGCCTGTTTGCCCTCGAGCACCGCATCGGCGGCACGGGCAGCGGAGA
TGGCCTTTTCCGCCAGCTGCATCTTCGCCTGCCGCGA

BO17438.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12985-PA 1113 CG12985-RA 442..1110 687..19 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12985-RA 1357 CG12985-RA 532..1200 687..19 3345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17884635..17885081 465..19 2235 100 Minus
X 23542271 X 17884249..17884476 687..460 1140 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:40:54 has no hits.

BO17438.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:13 Download gff for BO17438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12985-PA 443..1113 15..686 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:08:55 Download gff for BO17438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12985-RA 533..1203 15..686 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:25:50 Download gff for BO17438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12985-RA 533..1203 15..686 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:25:50 Download gff for BO17438.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17884250..17884475 461..686 100 -> Minus
X 17884640..17885084 15..460 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:08:55 Download gff for BO17438.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17778283..17778508 461..686 100 -> Minus
arm_X 17778673..17779117 15..460 99   Minus

BO17438.5prime Sequence

652 bp (571 high quality bases) assembled on 2006-10-13

> BO17438.5prime
GAAGTTATCCGTCGACATGTATATATTTCCACCATATACCCTGCTCCTTA
TCATCCTCCGCATTGTGAGTGTCCGTGCGATGAGCTTCGACCAGCCCCAC
AACGAACACGACGCCTCCCTGGCTAGCTATTTGGACAACACCAACGATGA
CATATCTCCCCAGGGCTTCAACGGCGATGGGAATGGTAGTTCGGGGGCCA
CAGTGGTGCCATTCCCTTATCTGGGATGCACCACAAGACCGTCCTACCAA
TCTGGATGTGAAAGCATGGACGAAAGCGCTAGGGACCGAGAAAAAGATCG
CAATATTGATCGGGATCGAGGCCGAGATTGGGATCGAAATAGGGGTTGCG
ATAGAAACAGGGATCGGGACAAAGACAGGAATAATATTAGAGATAGGGAC
AACTGTGACTCCTGTGACGAGATTATCAATTCGCGGCTGAAGGCCACCCA
CATTGCCCAGAATGCCGCCCAGGTGGCCAAGGCAGCCAATGATGCACAGG
CGGCCGCCGCTCAAGATGCATCGCGGCAGGCGAAGATGCAGCTGGCGGAA
AAGGCCATCTCCGCTGCCCGTGCCGCCGATGCGGTGCTCGAAGGCAAACA
GGCAATGGTGGAAAACTACGCTAGGGAGATCCGGGATGCCAAGGAGGTGG
TC

BO17438.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12985-PA 1113 CG12985-RA 1..573 80..652 2790 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12985-RA 1357 CG12985-RA 28..663 17..652 3135 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17883745..17884380 17..652 3135 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 07:41:05 has no hits.

BO17438.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:14 Download gff for BO17438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12985-PA 1..573 80..652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:08:58 Download gff for BO17438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12985-RA 23..663 12..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:26:18 Download gff for BO17438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12985-RA 23..663 12..652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:26:18 Download gff for BO17438.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17883740..17884380 12..652 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:08:58 Download gff for BO17438.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17777773..17778413 12..652 99   Plus

BO17438.complete Sequence

1207 bp assembled on 2008-08-14

GenBank Submission: FJ634120

> BO17438.complete
GAAGTTATCCGTCGACATGTATATATTTCCACCATATACCCTGCTCCTTA
TCATCCTCCGCATTGTGAGTGTCCGTGCGATGAGCTTCGACCAGCCCCAC
AACGAACACGACGCCTCCCTGGCTAGCTATTTGGACAACACCAACGATGA
CATATCTCCCCAGGGCTTCAACGGCGATGGGAATGGTAGTTCGGGGGCCA
CAGTGGTGCCATTCCCTTATCTGGGATGCACCACAAGACCGTCCTACCAA
TCTGGATGTGAAAGCATGGACGAAAGCGCTAGGGACCGAGAAAAAGATCG
CAATATTGATCGGGATCGAGGCCGAGATTGGGATCGAAATAGGGGTTGCG
ATAGAAACAGGGATCGGGACAAAGACAGGAATAATATTAGAGATAGGGAC
AACTGTGACTCCTGTGACGAGATTATCAATTCGCGGCTGAAGGCCACCCA
CATTGCCCAGAATGCCGCCCAGGTGGCCAAGGCAGCCAATGATGCACAGG
CGGCCGCCGCTCAAGATGCATCGCGGCAGGCGAAGATGCAGCTGGCGGAA
AAGGCCATCTCCGCTGCCCGTGCCGCCGATGCGGTGCTCGAGGGCAAACA
GGCAATGGTGGACAACTACGCTAGGGAGATCCGGGATGCCGAGGAGGTGG
TCGGACAGGTGAGCTGCTCGCTGCAGAACAGTGAGACGAACGTGGAGGCC
TCCTGTGCCGTGGTCAAAGCAGCGGAGGTTCAAGCCGAAACATTCAGGGC
CCTCGTACAGCAGACGAGTGGCATTTTGTCGGAAATGGACAGCCTAATCG
ACCAGTCGAACATGGATATCGAGGAGAAGAACCAAATGCTGGCGGCGGCG
AAGGCACGTGGTGACCGCCTGGCCCGCCAGGTGGCGCAAGCTAAGTCGGA
GTACGAGCAGGTGAAGGAGGCGGCCTGTCGCGCCGCATCCGCCGCCGTGG
AGGCCAAGCAAAAGGTCGGCACCGGCAGTTTGCTGTACAAGTCGTCGGTT
CACCGCCTACCCACTGTCGCCATAAGGGCCAATGGAGCGCGCGGTTACGC
ACTCGACAGGAACACCTGCAATGCTCTCCTGGATCTCTACAGGCAGCGCC
GACGGCAGCAACAGCGAATGCGGCGGGAGAAAATCCTGAACGGACTGGAT
CGCTATCAAGGGAATTCACTGTACGGGGATCACTCGTACGCAAGCTTTCT
AGACCAT

BO17438.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12985-RA 1113 CG12985-PA 1..1110 80..1189 5550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12985-RA 1357 CG12985-RA 28..1200 17..1189 5865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17883745..17884476 17..748 3660 100 Plus
X 23542271 X 17884635..17885081 743..1189 2235 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:49:56 has no hits.

BO17438.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:33 Download gff for BO17438.complete
Subject Subject Range Query Range Percent Splice Strand
CG12985-RA 23..1203 12..1193 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:48 Download gff for BO17438.complete
Subject Subject Range Query Range Percent Splice Strand
CG12985-RA 28..1200 17..1191 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:46 Download gff for BO17438.complete
Subject Subject Range Query Range Percent Splice Strand
CG12985-RA 28..1200 17..1191 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:11 Download gff for BO17438.complete
Subject Subject Range Query Range Percent Splice Strand
CG12985-RA 28..1200 17..1191 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:11 Download gff for BO17438.complete
Subject Subject Range Query Range Percent Splice Strand
X 17883745..17884475 17..747 100 -> Plus
X 17884640..17885081 748..1191 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:48 Download gff for BO17438.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17777778..17778508 17..747 100 -> Plus
arm_X 17778673..17779114 748..1191 99   Plus

BO17438.pep Sequence

Translation from 16 to 1207

> BO17438.pep
MYIFPPYTLLLIILRIVSVRAMSFDQPHNEHDASLASYLDNTNDDISPQG
FNGDGNGSSGATVVPFPYLGCTTRPSYQSGCESMDESARDREKDRNIDRD
RGRDWDRNRGCDRNRDRDKDRNNIRDRDNCDSCDEIINSRLKATHIAQNA
AQVAKAANDAQAAAAQDASRQAKMQLAEKAISAARAADAVLEGKQAMVDN
YAREIRDAEEVVGQVSCSLQNSETNVEASCAVVKAAEVQAETFRALVQQT
SGILSEMDSLIDQSNMDIEEKNQMLAAAKARGDRLARQVAQAKSEYEQVK
EAACRAASAAVEAKQKVGTGSLLYKSSVHRLPTVAIRANGARGYALDRNT
CNALLDLYRQRRRQQQRMRREKILNGLDRYQGNSLYGDHSYASFLDH

BO17438.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12985-PA 370 CG12985-PA 1..370 22..391 1887 100 Plus
CG14840-PA 300 CG14840-PA 87..261 142..316 360 44 Plus
CG14841-PA 274 CG14841-PA 81..259 138..316 353 41.3 Plus
CG34459-PC 305 CG34459-PC 120..296 142..318 336 42.9 Plus
CG34459-PB 305 CG34459-PB 120..296 142..318 336 42.9 Plus