Clone Sequence Records
BO17439.3prime Sequence
901 bp (748 high quality bases) assembled on 2006-10-13
> BO17439.3prime
ATGGTCTAGAAAGCTTGCGTAGTAGCTCTGCTCGTTGTAGAGCGGACCCA
AGTTGTTTGGCAGGATGTATATGTCCTCGGGACGACCGTTGAACACGAAC
GGACGCTTCAGCGATGTCAGCTTGGAGTCCTGCTGAGGAACCGGCATGGA
GGCGAGTCCAAAGCTCTGCTGAGAGCCTCCATAACCACCCATCGAAGGCG
ACGACATGGGTCTGTAGGGATTACTAGGCGTCGGTGGCCGCATTCCATAT
CCACCGCCACCCAAGCCAGGTGTCAGGGATCCCATCGCCTCACCCGGAGA
TCCGTTCACTTGGTAGACTCCAGTGGGCTTTCCGTTGGCCAGGAAGTTCA
CGGGCAAATTGAATACCGAACCGTAGGCGGAGAATGAGGGCATGGGCTGG
TAGGTCAGCAGTGGTGAGAATCCACCCCCAAATGGAGCCGTTGGCATATT
GGGCAAAAACATATACGGTGTGGGCGGCAGTCTTACGTAGTAGATGGGCG
AATTGCGGGCTGATGACGCGTGATTGGCCCCAGGACGCCGACCACCGGAG
GCTCGTGACATCACCACATCCTCGAGATCGTTGCTGGCGCCAGAAAAGGC
GGGATAGAACATATCCGGAGCCAGGTAGAGTGGGACGGGTATGAGCACTG
GCTGGGCATAGCCAATGAAGGGAAGCATCTTGGGCATGGCATCGTAAGGA
TTGCCCTGAGGTGCGGCATATGGACTCCAGGGATAGTTGGCAGAGTTGGG
GCATCGCGACTCCTGTTTCGACTCCTGCATCATCTGGTAGGGATCGTGTT
CCTCCTCGTCCTCCGACTTTAGATCCTGCTGCTCGCCAATGTGTCTTGGA
CATACTGCTGCGTGTGGATCTGCTGTCCCTGCGACTGTTGTTGTCCCCCC
T
BO17439.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-PA | 1029 | CG13857-RA | 208..1026 | 837..19 | 4045 | 99.7 | Minus |
| CG13857-PA | 1029 | CG13857-RA | 147..208 | 897..836 | 310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-RA | 1435 | CG13857-RA | 248..1131 | 901..19 | 4350 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22392493..22393376 | 19..901 | 4325 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:23:03 has no hits.
BO17439.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:15 Download gff for
BO17439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-PA | 143..1029 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:19 Download gff for
BO17439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 248..1136 | 11..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:11 Download gff for
BO17439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 248..1136 | 11..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:11 Download gff for
BO17439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22392488..22393376 | 11..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:19 Download gff for
BO17439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18218210..18219098 | 11..901 | 99 | | Plus |
BO17439.5prime Sequence
793 bp (747 high quality bases) assembled on 2006-10-13
> BO17439.5prime
GAAGTTATCAGTCGACATGGGTAACCACATGTGGAGCATCATACTAATGC
TGCTGGTGCTGGAGCAACTAGTGGCCGACTCTGTGGCAGCCAATCTAGCC
CAGCTGGTGAAGAAGCAGAGCCAACAGAAGCAGTTGCAATCCTCGCAGCC
AGGACTGCAGGTGGGACAACAACAGTCGCAGGGACAGCAGATCCACACGC
AGCAGTATGTCCAAGACACATTGGGCGAGCAGCAGGATCTAAAGTCGGAG
GACGAGGAGGAACACGATCCCTACCAGATGATGCAGGAGTCGAAACAGGA
GTCGCGATTGCCCAACTCTGCCAACTATCCCTGGAGTCCATATGCCGCAC
CTCAGGGCAATCCTTACGATGCCATGCCCAAGATGCTTCCCTTCATTGGC
TATGCCCAGCCAGTGCTCATACCCGTCCCACTCTACCTGGCTCCGGATAT
GTTCTATCCCGCCTTTTCTGGCGCCAGCAACGATCTCGAGGATGTGGTGA
TGTCACGAGCCTCCGGTGGTCGGCGTCCTGGGGCCAATCACGCGTCATCA
GCCCGCAATTCGCCCATCTACTACGTAAGACTGCCGCCCACACCGTATAT
GTTTTTGCCCAATATGCCAACGGCTCCATTTGGGGGTGGATTCTCACCAC
TGCTGACCTACCAGCCCATGCCCTCATTCTCCGCCTACGGTTCGGTATTC
AATTTGCCCGTGAACTTCCTGGCCAACGGAAAGCCCACTGGAGTCTACCA
AGTGAACGGATCTCCGGGTGAGGCGATGGGATCCCTGACACCT
BO17439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:14:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-PA | 1029 | CG13857-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-RA | 1435 | CG13857-RA | 106..882 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22392742..22393518 | 793..17 | 3885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:04:19 has no hits.
BO17439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:16 Download gff for
BO17439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:33 Download gff for
BO17439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 102..882 | 12..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:10 Download gff for
BO17439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 102..882 | 12..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:10 Download gff for
BO17439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22392742..22393522 | 12..793 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:33 Download gff for
BO17439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18218464..18219244 | 12..793 | 99 | | Minus |
BO17439.complete Sequence
1060 bp assembled on 2006-10-11
GenBank Submission: FJ634121
> BO17439.complete
GAAGTTATCAGTCGACATGGGTAACCACATGTGGAGCATCATACTAATGC
TGCTGGTGCTGGAGCAACTAGTGGCCGACTCTGTGGCAGCCAATCTAGCC
CAGCTGGTGAAGAAGCAGAGCCAACAGAAGCAGTTGCAATCCTCGCAGCC
AGGACTGCAGGTGGGACAACAACAGTCGCAGGGACAGCAGATCCACACGC
AGCAGTATGTCCAAGACACATTGGGCGAGCAGCAGGATCTAAAGTCGGAG
GACGAGGAGGAACACGATCCCTACCAGATGATGCAGGAGTCGAAACAGGA
GTCGCGATTGCCCAACTCTGCCAACTATCCCTGGAGTCCATATGCCGCAC
CTCAGGGCAATCCTTACGATGCCATGCCCAAGATGCTTCCCTTCATTGGC
TATGCCCAGCCAGTGCTCATACCCGTCCCACTCTACCTGGCTCCGGATAT
GTTCTATCCCGCCTTTTCTGGCGCCAGCAACGATCTCGAGGATGTGGTGA
TGTCACGAGCCTCCGGTGGTCGGCGTCCTGGGGCCAATCACGCGTCATCA
GCCCGCAATTCGCCCATCTACTACGTAAGACTGCCGCCCACACCGTATAT
GTTTTTGCCCAATATGCCAACGGCTCCATTTGGGGGTGGATTCTCACCAC
TGCTGACCTACCAGCCCATGCCCTCATTCTCCGCCTACGGTTCGGTATTC
AATTTGCCCGTGAACTTCCTGGCCAACGGAAAGCCCACTGGAGTCTACCA
AGTGAACGGATCTCCGGGTGAGGCGATGGGATCCCTGACACCTGGCTTGG
GTGGCGGTGGATATGGAATGCGGCCACCGACGCCTAGTAATCCCTACAGA
CCCATGTCGTCGCCTTCGATGGGTGGTTATGGAGGCTCTCAGCAGAGCTT
TGGACTCGCCTCCATGCCGGTTCCTCAGCAGGACTCCAAGCTGACATCGC
TGAAGCGTCCGTTCGTGTTCAACGGTCGTCCCGAGGACATATACATCCTG
CCAAACAACTTGGGTCCGCTCTACAACGAGCAGAGCTACTACGCAAGCTT
TCTAGACCAT
BO17439.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-RA | 1029 | CG13857-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-RA | 1435 | CG13857-RA | 106..1131 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22392493..22393518 | 1042..17 | 5130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:14:23 has no hits.
BO17439.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:03 Download gff for
BO17439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 1..1029 | 17..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:02 Download gff for
BO17439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 102..1136 | 12..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:30 Download gff for
BO17439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 106..1131 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:03 Download gff for
BO17439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 102..1136 | 12..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:38 Download gff for
BO17439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 106..1131 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:38 Download gff for
BO17439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22392491..22393518 | 17..1044 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:30 Download gff for
BO17439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18218213..18219240 | 17..1044 | 99 | | Minus |
BO17439.pep Sequence
Translation from 16 to 1060
> BO17439.pep
MGNHMWSIILMLLVLEQLVADSVAANLAQLVKKQSQQKQLQSSQPGLQVG
QQQSQGQQIHTQQYVQDTLGEQQDLKSEDEEEHDPYQMMQESKQESRLPN
SANYPWSPYAAPQGNPYDAMPKMLPFIGYAQPVLIPVPLYLAPDMFYPAF
SGASNDLEDVVMSRASGGRRPGANHASSARNSPIYYVRLPPTPYMFLPNM
PTAPFGGGFSPLLTYQPMPSFSAYGSVFNLPVNFLANGKPTGVYQVNGSP
GEAMGSLTPGLGGGGYGMRPPTPSNPYRPMSSPSMGGYGGSQQSFGLASM
PVPQQDSKLTSLKRPFVFNGRPEDIYILPNNLGPLYNEQSYYASFLDH
BO17439.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-PA | 342 | CG13857-PA | 1..342 | 1..342 | 1821 | 100 | Plus |
