Clone Sequence Records
BO17441.3prime Sequence
886 bp (767 high quality bases) assembled on 2006-10-13
> BO17441.3prime
ATGGTCTAGAAAGCTTGCGTACATGTGCTGTAGGGTATACGGATAGCAGA
CCGCATAGCTGGGCACTCGGGAATACAGTCCCGACATGCCCTTCATGTAG
ACGTACTGGACTGGCGGTCGCAGGATGCTCTGCTGCTTCTTATCCTCCTT
CTTGGAGGCGGGAGCACGGGAGAATTTGGAGCTGGAGCTGCTGCTGCTGC
TGTTGTTCGAGTTGTTCGGCGACAGGGATTTCTTGGGCTGACGCAGTGGA
GTGCTGCTGCAGGACAACGAGCGCATCGATGCATTTCCCGTCGGACTGGA
GAAGTGATGCAGGATGCGGCTCACCGAGGAGGAGATGGAAATTCGGCTGA
GATGCAGTCCCGATGACTTGGCGGAAGCGGCTGATGCGGATCGAGGCTTG
CTGTTCTCGTTCTCGTTCTCGTCGTGGCGCAGCTCCACCTCGTCCTCCGC
CTCGTTGCTGCTACCCTCCTCGCTGGTGTCTTCCTCGAAGTGCAGCTGCG
GATGCAGTTGCTCCATGGCACTGCCGGGTCTGTAGACAGCCTCCACATAG
ATGTGTCCCTGCTGATCGTAGTAATCCAGACCGGGCGAGTATCTGGAGCA
GGCCGATCCGCTCGAGGTCCGGGATGTGTGCTCCAGGTCCAGGGAGGAAC
CATTGATAGGGCACTCGTGGCTGCCACGCTCGTAGCTCAAGCTGAAGGAA
TCCGTTGAGCTGCTCCTAATATCATCCTGGCTGCTGTAGACCGTGTCGTT
CTGCTGGTTCTGGTGGTGGAAGTGCCTGCCCAGGTGCCTGCTGAGCAATT
GCAGCAAACTCCTGGAGCGGGAAACTTCTTGGGCCATTCCTTGGGTGACG
ATGAAACTTCTCCTTCTGCTGCTGCTTGCCGAGATC
BO17441.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-PA | 945 | CG13054-RA | 137..942 | 824..19 | 4030 | 100 | Minus |
CG13054-PA | 945 | CG13054-RA | 73..125 | 886..834 | 265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-RA | 1340 | CG13054-RA | 229..1098 | 886..19 | 4300 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16256094..16256963 | 19..886 | 4250 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-12 11:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6822 | 262..177 | 143 | 66.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6868 | 259..108 | 142 | 60.1 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1153 | 262..176 | 137 | 64.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6871 | 217..176 | 129 | 78.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2368 | 216..177 | 119 | 77.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2371 | 216..177 | 119 | 77.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2374 | 216..177 | 119 | 77.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2430 | 262..181 | 116 | 65.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2377 | 216..177 | 110 | 75 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6780 | 216..177 | 110 | 75 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 8572..8677 | 230..131 | 110 | 61.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2476 | 214..177 | 109 | 76.3 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7140..7224 | 215..131 | 109 | 63.2 | Minus |
BO17441.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:18 Download gff for
BO17441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-PA | 73..945 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:22 Download gff for
BO17441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 229..1101 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:41 Download gff for
BO17441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 229..1101 | 15..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:41 Download gff for
BO17441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16256090..16256963 | 15..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:22 Download gff for
BO17441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16249190..16250063 | 15..886 | 99 | | Plus |
BO17441.5prime Sequence
739 bp (738 high quality bases) assembled on 2006-10-13
> BO17441.5prime
GAAGTTATCAGTCGACATGGATACTCTGTCACCCAATAATGGCTCTAAGT
CGAGCTCCAGCGGCAGTTCGGCGGCCAGTTCCTCCATGGATCTCGGCAAG
CAGCAGCAGAAGGAGAAGTTTCATCGTCACCCAAGGAATGGGCCCAAGAA
GCTTTCCCGCTCCAGGAGTTTGCTGCAATTGCTCAGCAGGCACCTGGGCA
GGCACTTCCACCACCAGAACCAGCAGAACGACACGGTCTACAGCAGCCAG
GATGATATTAGGAGCAGCTCAACGGATTCCTTCAGCTTGAGCTACGAGCG
TGGCAGCCACGAGTGCCCTATCAATGGTTCCTCCCTGGACCTGGAGCACA
CATCCCGGACCTCGAGCGGATCGGCCTGCTCCAGATACTCGCCCGGTCTG
GATTACTACGATCAGCAGGGACACATCTATGTGGAGGCTGTCTACAGACC
CGGCAGTGCCATGGAGCAACTGCATCCGCAGCTGCACTTCGAGGAAGACA
CCAGCGAGGAGGGTAGCAGCAACGAGGCGGAGGACGAGGTGGAGCTGCGC
CACGACGAGAACGAGAACGAGAACAGCAAGCCTCGATCCGCATCAGCCGC
TTCCGCCAAGTCATCGGGACTGCATCTCAGCCGAATTTCCATCTCCTCCT
CGGTGAGCCGCATCCTGCATCACTTCTCCAGTCCGACGGGAAATGCATCG
ATGCGCTCGTTGTCCTGCAGCAGCACTCCACTGCGTCAG
BO17441.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-PA | 945 | CG13054-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-RA | 1340 | CG13054-RA | 156..879 | 16..739 | 3620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16256313..16257036 | 739..16 | 3620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:54:53 has no hits.
BO17441.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:18 Download gff for
BO17441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-PA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:44 Download gff for
BO17441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 153..879 | 13..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:35 Download gff for
BO17441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 153..879 | 13..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:35 Download gff for
BO17441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16256313..16257039 | 13..739 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:44 Download gff for
BO17441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16249413..16250139 | 13..739 | 99 | | Minus |
BO17441.complete Sequence
976 bp assembled on 2006-10-11
GenBank Submission: FJ634122
> BO17441.complete
GAAGTTATCAGTCGACATGGATACTCTGTCACCCAATAATGGCTCTAAGT
CGAGCTCCAGCGGCAGTTCGGCGGCCAGTTCCTCCATGGATCTCGGCAAG
CAGCAGCAGAAGGAGAAGTTTCATCGTCACCCAAGGAATGGGCCCAAGAA
GCTTTCCCGCTCCAGGAGTTTGCTGCAATTGCTCAGCAGGCACCTGGGCA
GGCACTTCCACCACCAGAACCAGCAGAACGACACGGTCTACAGCAGCCAG
GATGATATTAGGAGCAGCTCAACGGATTCCTTCAGCTTGAGCTACGAGCG
TGGCAGCCACGAGTGCCCTATCAATGGTTCCTCCCTGGACCTGGAGCACA
CATCCCGGACCTCGAGCGGATCGGCCTGCTCCAGATACTCGCCCGGTCTG
GATTACTACGATCAGCAGGGACACATCTATGTGGAGGCTGTCTACAGACC
CGGCAGTGCCATGGAGCAACTGCATCCGCAGCTGCACTTCGAGGAAGACA
CCAGCGAGGAGGGTAGCAGCAACGAGGCGGAGGACGAGGTGGAGCTGCGC
CACGACGAGAACGAGAACGAGAACAGCAAGCCTCGATCCGCATCAGCCGC
TTCCGCCAAGTCATCGGGACTGCATCTCAGCCGAATTTCCATCTCCTCCT
CGGTGAGCCGCATCCTGCATCACTTCTCCAGTCCGACGGGAAATGCATCG
ATGCGCTCGTTGTCCTGCAGCAGCACTCCACTGCGTCAGCCCAAGAAATC
CCTGTCGCCGAACAACTCGAACAACAGCAGCAGCAGCAGCTCCAGCTCCA
AATTCTCCCGTGCTCCCGCCTCCAAGAAGGAGGATAAGAAGCAGCAGAGC
ATCCTGCGACCGCCAGTCCAGTACGTCTACATGAAGGGCATGTCGGGACT
GTATTCCCGAGTGCCCAGCTATGCGGTCTGCTATCCGTATACCCTACAGC
ACATGTACGCAAGCTTTCTAGACCAT
BO17441.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-RA | 945 | CG13054-PA | 1..942 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-RA | 1340 | CG13054-RA | 156..1098 | 16..958 | 4715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16256094..16257036 | 958..16 | 4715 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 15:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6822 | 715..800 | 143 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6868 | 718..869 | 142 | 60.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1153 | 715..801 | 137 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6871 | 760..801 | 129 | 78.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2368 | 761..800 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2371 | 761..800 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2374 | 761..800 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2430 | 715..796 | 116 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2377 | 761..800 | 110 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6780 | 761..800 | 110 | 75 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8572..8677 | 747..846 | 110 | 61.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2476 | 763..800 | 109 | 76.3 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7140..7224 | 762..846 | 109 | 63.2 | Plus |
BO17441.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:43 Download gff for
BO17441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 1..945 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:39 Download gff for
BO17441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 153..1101 | 13..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:37 Download gff for
BO17441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 157..1098 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:43 Download gff for
BO17441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 153..1101 | 13..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:13 Download gff for
BO17441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 157..1098 | 17..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:13 Download gff for
BO17441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16256092..16257035 | 17..960 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:37 Download gff for
BO17441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16249192..16250135 | 17..960 | 99 | | Minus |
BO17441.pep Sequence
Translation from 16 to 976
> BO17441.pep
MDTLSPNNGSKSSSSGSSAASSSMDLGKQQQKEKFHRHPRNGPKKLSRSR
SLLQLLSRHLGRHFHHQNQQNDTVYSSQDDIRSSSTDSFSLSYERGSHEC
PINGSSLDLEHTSRTSSGSACSRYSPGLDYYDQQGHIYVEAVYRPGSAME
QLHPQLHFEEDTSEEGSSNEAEDEVELRHDENENENSKPRSASAASAKSS
GLHLSRISISSSVSRILHHFSSPTGNASMRSLSCSSTPLRQPKKSLSPNN
SNNSSSSSSSSKFSRAPASKKEDKKQQSILRPPVQYVYMKGMSGLYSRVP
SYAVCYPYTLQHMYASFLDH
BO17441.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-PA | 314 | CG13054-PA | 1..314 | 1..314 | 1620 | 100 | Plus |