Clone BO17441 Report

Search the DGRC for BO17441

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:174
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG13054-RA
Protein status:BO17441.pep: validated full length
Sequenced Size:976

Clone Sequence Records

BO17441.3prime Sequence

886 bp (767 high quality bases) assembled on 2006-10-13

> BO17441.3prime
ATGGTCTAGAAAGCTTGCGTACATGTGCTGTAGGGTATACGGATAGCAGA
CCGCATAGCTGGGCACTCGGGAATACAGTCCCGACATGCCCTTCATGTAG
ACGTACTGGACTGGCGGTCGCAGGATGCTCTGCTGCTTCTTATCCTCCTT
CTTGGAGGCGGGAGCACGGGAGAATTTGGAGCTGGAGCTGCTGCTGCTGC
TGTTGTTCGAGTTGTTCGGCGACAGGGATTTCTTGGGCTGACGCAGTGGA
GTGCTGCTGCAGGACAACGAGCGCATCGATGCATTTCCCGTCGGACTGGA
GAAGTGATGCAGGATGCGGCTCACCGAGGAGGAGATGGAAATTCGGCTGA
GATGCAGTCCCGATGACTTGGCGGAAGCGGCTGATGCGGATCGAGGCTTG
CTGTTCTCGTTCTCGTTCTCGTCGTGGCGCAGCTCCACCTCGTCCTCCGC
CTCGTTGCTGCTACCCTCCTCGCTGGTGTCTTCCTCGAAGTGCAGCTGCG
GATGCAGTTGCTCCATGGCACTGCCGGGTCTGTAGACAGCCTCCACATAG
ATGTGTCCCTGCTGATCGTAGTAATCCAGACCGGGCGAGTATCTGGAGCA
GGCCGATCCGCTCGAGGTCCGGGATGTGTGCTCCAGGTCCAGGGAGGAAC
CATTGATAGGGCACTCGTGGCTGCCACGCTCGTAGCTCAAGCTGAAGGAA
TCCGTTGAGCTGCTCCTAATATCATCCTGGCTGCTGTAGACCGTGTCGTT
CTGCTGGTTCTGGTGGTGGAAGTGCCTGCCCAGGTGCCTGCTGAGCAATT
GCAGCAAACTCCTGGAGCGGGAAACTTCTTGGGCCATTCCTTGGGTGACG
ATGAAACTTCTCCTTCTGCTGCTGCTTGCCGAGATC

BO17441.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-PA 945 CG13054-RA 137..942 824..19 4030 100 Minus
CG13054-PA 945 CG13054-RA 73..125 886..834 265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-RA 1340 CG13054-RA 229..1098 886..19 4300 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16256094..16256963 19..886 4250 99.8 Plus
Blast to na_te.dros performed 2015-02-12 11:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6822 262..177 143 66.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6868 259..108 142 60.1 Minus
roo 9092 roo DM_ROO 9092bp 1067..1153 262..176 137 64.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6830..6871 217..176 129 78.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2368 216..177 119 77.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2371 216..177 119 77.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2335..2374 216..177 119 77.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2430 262..181 116 65.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2377 216..177 110 75 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6780 216..177 110 75 Minus
TART-C 11124 TART-C TARTC 11124bp 8572..8677 230..131 110 61.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2476 214..177 109 76.3 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7140..7224 215..131 109 63.2 Minus

BO17441.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:18 Download gff for BO17441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13054-PA 73..945 15..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:22 Download gff for BO17441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 229..1101 15..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:41 Download gff for BO17441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 229..1101 15..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:41 Download gff for BO17441.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16256090..16256963 15..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:22 Download gff for BO17441.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16249190..16250063 15..886 99   Plus

BO17441.5prime Sequence

739 bp (738 high quality bases) assembled on 2006-10-13

> BO17441.5prime
GAAGTTATCAGTCGACATGGATACTCTGTCACCCAATAATGGCTCTAAGT
CGAGCTCCAGCGGCAGTTCGGCGGCCAGTTCCTCCATGGATCTCGGCAAG
CAGCAGCAGAAGGAGAAGTTTCATCGTCACCCAAGGAATGGGCCCAAGAA
GCTTTCCCGCTCCAGGAGTTTGCTGCAATTGCTCAGCAGGCACCTGGGCA
GGCACTTCCACCACCAGAACCAGCAGAACGACACGGTCTACAGCAGCCAG
GATGATATTAGGAGCAGCTCAACGGATTCCTTCAGCTTGAGCTACGAGCG
TGGCAGCCACGAGTGCCCTATCAATGGTTCCTCCCTGGACCTGGAGCACA
CATCCCGGACCTCGAGCGGATCGGCCTGCTCCAGATACTCGCCCGGTCTG
GATTACTACGATCAGCAGGGACACATCTATGTGGAGGCTGTCTACAGACC
CGGCAGTGCCATGGAGCAACTGCATCCGCAGCTGCACTTCGAGGAAGACA
CCAGCGAGGAGGGTAGCAGCAACGAGGCGGAGGACGAGGTGGAGCTGCGC
CACGACGAGAACGAGAACGAGAACAGCAAGCCTCGATCCGCATCAGCCGC
TTCCGCCAAGTCATCGGGACTGCATCTCAGCCGAATTTCCATCTCCTCCT
CGGTGAGCCGCATCCTGCATCACTTCTCCAGTCCGACGGGAAATGCATCG
ATGCGCTCGTTGTCCTGCAGCAGCACTCCACTGCGTCAG

BO17441.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-PA 945 CG13054-RA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-RA 1340 CG13054-RA 156..879 16..739 3620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16256313..16257036 739..16 3620 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:54:53 has no hits.

BO17441.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:07:18 Download gff for BO17441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13054-PA 1..723 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:44 Download gff for BO17441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 153..879 13..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:35 Download gff for BO17441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 153..879 13..739 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:35 Download gff for BO17441.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16256313..16257039 13..739 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:44 Download gff for BO17441.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16249413..16250139 13..739 99   Minus

BO17441.complete Sequence

976 bp assembled on 2006-10-11

GenBank Submission: FJ634122

> BO17441.complete
GAAGTTATCAGTCGACATGGATACTCTGTCACCCAATAATGGCTCTAAGT
CGAGCTCCAGCGGCAGTTCGGCGGCCAGTTCCTCCATGGATCTCGGCAAG
CAGCAGCAGAAGGAGAAGTTTCATCGTCACCCAAGGAATGGGCCCAAGAA
GCTTTCCCGCTCCAGGAGTTTGCTGCAATTGCTCAGCAGGCACCTGGGCA
GGCACTTCCACCACCAGAACCAGCAGAACGACACGGTCTACAGCAGCCAG
GATGATATTAGGAGCAGCTCAACGGATTCCTTCAGCTTGAGCTACGAGCG
TGGCAGCCACGAGTGCCCTATCAATGGTTCCTCCCTGGACCTGGAGCACA
CATCCCGGACCTCGAGCGGATCGGCCTGCTCCAGATACTCGCCCGGTCTG
GATTACTACGATCAGCAGGGACACATCTATGTGGAGGCTGTCTACAGACC
CGGCAGTGCCATGGAGCAACTGCATCCGCAGCTGCACTTCGAGGAAGACA
CCAGCGAGGAGGGTAGCAGCAACGAGGCGGAGGACGAGGTGGAGCTGCGC
CACGACGAGAACGAGAACGAGAACAGCAAGCCTCGATCCGCATCAGCCGC
TTCCGCCAAGTCATCGGGACTGCATCTCAGCCGAATTTCCATCTCCTCCT
CGGTGAGCCGCATCCTGCATCACTTCTCCAGTCCGACGGGAAATGCATCG
ATGCGCTCGTTGTCCTGCAGCAGCACTCCACTGCGTCAGCCCAAGAAATC
CCTGTCGCCGAACAACTCGAACAACAGCAGCAGCAGCAGCTCCAGCTCCA
AATTCTCCCGTGCTCCCGCCTCCAAGAAGGAGGATAAGAAGCAGCAGAGC
ATCCTGCGACCGCCAGTCCAGTACGTCTACATGAAGGGCATGTCGGGACT
GTATTCCCGAGTGCCCAGCTATGCGGTCTGCTATCCGTATACCCTACAGC
ACATGTACGCAAGCTTTCTAGACCAT

BO17441.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-RA 945 CG13054-PA 1..942 17..958 4710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-RA 1340 CG13054-RA 156..1098 16..958 4715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16256094..16257036 958..16 4715 100 Minus
Blast to na_te.dros performed 2014-11-27 15:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6822 715..800 143 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6868 718..869 142 60.1 Plus
roo 9092 roo DM_ROO 9092bp 1067..1153 715..801 137 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6830..6871 760..801 129 78.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2368 761..800 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2371 761..800 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2335..2374 761..800 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2430 715..796 116 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2377 761..800 110 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6780 761..800 110 75 Plus
TART-C 11124 TART-C TARTC 11124bp 8572..8677 747..846 110 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2476 763..800 109 76.3 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7140..7224 762..846 109 63.2 Plus

BO17441.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:43 Download gff for BO17441.complete
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 1..945 17..962 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:39 Download gff for BO17441.complete
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 153..1101 13..962 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:37 Download gff for BO17441.complete
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 157..1098 17..960 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:43 Download gff for BO17441.complete
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 153..1101 13..962 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:13 Download gff for BO17441.complete
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 157..1098 17..960 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:13 Download gff for BO17441.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16256092..16257035 17..960 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:37 Download gff for BO17441.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16249192..16250135 17..960 99   Minus

BO17441.pep Sequence

Translation from 16 to 976

> BO17441.pep
MDTLSPNNGSKSSSSGSSAASSSMDLGKQQQKEKFHRHPRNGPKKLSRSR
SLLQLLSRHLGRHFHHQNQQNDTVYSSQDDIRSSSTDSFSLSYERGSHEC
PINGSSLDLEHTSRTSSGSACSRYSPGLDYYDQQGHIYVEAVYRPGSAME
QLHPQLHFEEDTSEEGSSNEAEDEVELRHDENENENSKPRSASAASAKSS
GLHLSRISISSSVSRILHHFSSPTGNASMRSLSCSSTPLRQPKKSLSPNN
SNNSSSSSSSSKFSRAPASKKEDKKQQSILRPPVQYVYMKGMSGLYSRVP
SYAVCYPYTLQHMYASFLDH

BO17441.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-PA 314 CG13054-PA 1..314 1..314 1620 100 Plus